HHsearch alignment for GI: 254780588 and conserved domain: TIGR01117
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit; InterPro: IPR005783 This family describes methymalonyl-CoA decarboxylase alpha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.; GO: 0004492 methylmalonyl-CoA decarboxylase activity, 0006814 sodium ion transport.
Probab=99.59 E-value=1.5e-14 Score=124.38 Aligned_cols=193 Identities=20% Similarity=0.308 Sum_probs=138.3
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC-----CCCCCCCC------EEEEEEEEECCCEEEEEEECCCCCCH
Q ss_conf 999988876350022379998622545--067227-----53347897------29999887538008999845877502
Q gi|254780588|r 56 TPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG-----DRLFGDDP------AMQIGLARFHGQPVAIIGQEKGSDTK 122 (317)
Q Consensus 56 t~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G-----Dr~~~dD~------aii~G~a~i~g~~v~vig~~kG~~~~ 122 (317)
T Consensus 17 GG~~~~~~qh~~Gk~tarerl~~l~d~~~fve~~~fv~~r~~~fG~~k~~lP~~~vvtGyG~~~Gr~v~~f~qdft---- 92 (513)
T TIGR01117 17 GGEKRIEKQHEQGKLTARERLELLLDEGSFVELDAFVKHRCTNFGLDKKELPAEGVVTGYGTVDGRLVYVFAQDFT---- 92 (513)
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEECCEEEEEEECCEE----
T ss_conf 5467888776505413888999870887422177899775453066312178664365202443659999841404----
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 344202677683689999999999997199489999535324677843-0027999999988862379988999961677
Q gi|254780588|r 123 SRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAE-ARGQGEAIARATEMCLKLQVPILSIIIGEGG 201 (317)
Q Consensus 123 ~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE-~~G~~~aia~~l~~~~~~~vP~i~vv~geg~ 201 (317)
T Consensus 93 ----v~GG~lGemh~~ki~~~~~~a~~~G~P~vGlndsGGariqe~vd~l~GyG~if~~n--~~~sGv~Pqi~~i~GPCa 166 (513)
T TIGR01117 93 ----VEGGSLGEMHAAKIVKILDLALKLGAPVVGLNDSGGARIQEAVDALKGYGDIFYRN--TIASGVVPQISVILGPCA 166 (513)
T ss_pred ----EECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCCEEEEECCCC
T ss_conf ----40674145778999999999986298678850787622566666654445787642--110253200001241577
Q ss_pred CCCCCCCCCCCCEEEECC-CCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCC--CCCHHH
Q ss_conf 775421133200022046-74012155442244215601225655420388489997899652622889844--489899
Q gi|254780588|r 202 SGGAMGIAAANFVYMLEH-AIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGA--HRNPAQ 278 (317)
Q Consensus 202 sGGA~a~~~~d~v~m~~~-s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II~EP~GGA--Hrd~~~ 278 (317)
T Consensus 167 GGavysPa~~dfi~m~~~p~~~-------------------------mfitGP~v~k~vtG~ev~~~~lGG~~~h~~~sG 221 (513)
T TIGR01117 167 GGAVYSPALTDFILMVDNPTSQ-------------------------MFITGPQVIKTVTGEEVTAEDLGGAMAHASKSG 221 (513)
T ss_pred CCCCCCHHHHCEEEEEECCCEE-------------------------EEEECCHHEEEECCCCCCHHHHCHHHHHHHCCC
T ss_conf 7531110020024355267416-------------------------887250220000465101434120344431156
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780588|r 279 TISSV 283 (317)
Q Consensus 279 ~~~~l 283 (317)
T Consensus 222 ~~~~~ 226 (513)
T TIGR01117 222 VAHLI 226 (513)
T ss_pred CEEEE
T ss_conf 02220