HHsearch alignment for GI: 254780588 and conserved domain: cd07013

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.77  E-value=0.00016  Score=53.13  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             CCCCCHHHHHHHHHHHHHH--HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf             6776836899999999999--97199489999535324677843002799999998886237998899996167777542
Q gi|254780588|r  129 FGSPRPEGYRKAVRLMEMA--DRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM  206 (317)
Q Consensus       129 ~G~~~p~g~rKa~r~~~~A--~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~  206 (317)
T Consensus         6 ~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG----------~v~~g~aI~d~i~~~~~~v~tv~~G~aaS~as~   75 (162)
T cd07013           6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG----------DVFAGMAIYDTIKFIKADVVTIIDGLAASMGSV   75 (162)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC----------CHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
T ss_conf             8801789999999999997262979998999979985----------799999999999847999899963046516589


Q ss_pred             CCCCCC--CEEEECCCCEEEECHHH
Q ss_conf             113320--00220467401215544
Q gi|254780588|r  207 GIAAAN--FVYMLEHAIYSVISPEG  229 (317)
Q Consensus       207 a~~~~d--~v~m~~~s~ysvisPEg  229 (317)
T Consensus        76 i~~aG~~g~R~~~~~s~~MiHq~~~  100 (162)
T cd07013          76 IAMAGAKGKRFILPNAMMMIHQPWG  100 (162)
T ss_pred             HHHCCCCCCCEECCCHHHHHHCCCC
T ss_conf             9973788881767668998806345