HHsearch alignment for GI: 254780588 and conserved domain: cd07013
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.77 E-value=0.00016 Score=53.13 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHH--HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 6776836899999999999--97199489999535324677843002799999998886237998899996167777542
Q gi|254780588|r 129 FGSPRPEGYRKAVRLMEMA--DRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM 206 (317)
Q Consensus 129 ~G~~~p~g~rKa~r~~~~A--~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~ 206 (317)
T Consensus 6 ~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG----------~v~~g~aI~d~i~~~~~~v~tv~~G~aaS~as~ 75 (162)
T cd07013 6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG----------DVFAGMAIYDTIKFIKADVVTIIDGLAASMGSV 75 (162)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC----------CHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
T ss_conf 8801789999999999997262979998999979985----------799999999999847999899963046516589
Q ss_pred CCCCCC--CEEEECCCCEEEECHHH
Q ss_conf 113320--00220467401215544
Q gi|254780588|r 207 GIAAAN--FVYMLEHAIYSVISPEG 229 (317)
Q Consensus 207 a~~~~d--~v~m~~~s~ysvisPEg 229 (317)
T Consensus 76 i~~aG~~g~R~~~~~s~~MiHq~~~ 100 (162)
T cd07013 76 IAMAGAKGKRFILPNAMMMIHQPWG 100 (162)
T ss_pred HHHCCCCCCCEECCCHHHHHHCCCC
T ss_conf 9973788881767668998806345