HHsearch alignment for GI: 254780588 and conserved domain: cd07018
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=96.70 E-value=0.042 Score=35.97 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=68.4
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 02677683689999999999997199--4899995353246778430027999999988862379988999961677775
Q gi|254780588|r 127 HNFGSPRPEGYRKAVRLMEMADRFKI--PVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGG 204 (317)
Q Consensus 127 ~n~G~~~p~g~rKa~r~~~~A~~f~l--Piv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGG 204 (317)
T Consensus 21 ~~~~~~~~~~l~~l~~~l~~A~~D~~ik~vvL~i~s~gg~-------~~~~~ei~~ai~~~k~~gKpVva~~~~-~~s~~ 92 (222)
T cd07018 21 LGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGG-------LAKLEELRQALERFRASGKPVIAYADG-YSQGQ 92 (222)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHHHHHHCCEEEEEECC-CCCHH
T ss_conf 5499988405999999999983399963899966899976-------999999999999998609939999525-66166
Q ss_pred CCCCCCCCCEEEECCCCEEEEC
Q ss_conf 4211332000220467401215
Q gi|254780588|r 205 AMGIAAANFVYMLEHAIYSVIS 226 (317)
Q Consensus 205 A~a~~~~d~v~m~~~s~ysvis 226 (317)
T Consensus 93 Y~lAs~ad~I~a~p~~~vg~iG 114 (222)
T cd07018 93 YYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred HHHHHHCCEEEECCCCEEEEEE
T ss_conf 5887527855776887687764