HHsearch alignment for GI: 254780588 and conserved domain: pfam01039
>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=99.84 E-value=1.5e-19 Score=159.68 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHCCCC--EEEECC---CCCCC------CCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHH
Q ss_conf 022379998622545--067227---53347------8972999988753800899984587750234420267768368
Q gi|254780588|r 68 NRPHYIDYINSLFTH--FISLAG---DRLFG------DDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEG 136 (317)
Q Consensus 68 ~Rp~~~dyi~~l~~d--f~el~G---Dr~~~------dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g 136 (317)
T Consensus 6 GkltaReRi~~LlD~gSF~E~g~l~~~~~~~~~~~~~p~dgvv~G~G~I~Gr~v~v~a~D~tv--------~gGs~~~~~ 77 (487)
T pfam01039 6 GKLTARERIDLLLDPGSFGELEDLFFHRVTEFGRKRLPGDGVVTGSGAIDGRAVEVVAQDFTV--------WGGSLGPAH 77 (487)
T ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCEE--------ECCCCCHHH
T ss_conf 785799999985599988535566640154100025887379999999988899999626727--------788887666
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 99999999999971994899995353246778430027999999988862379988999961677775421133200022
Q gi|254780588|r 137 YRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYM 216 (317)
Q Consensus 137 ~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m 216 (317)
T Consensus 78 ~~Ki~~~~e~A~~~~lP~v~l~dsgG~r~~eg~~~l~~~g~i~~~~~~~s~-~iP~is~v~G~~~GggA~~~~~sd~~im 156 (487)
T pfam01039 78 GFKITRAMELAIKEGEPLIGINDSGGARIQEGVENLRGYGLIFGANSRASG-VIPQISLVTGPCAGGGAYSPALGDFIIM 156 (487)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCEECCCCEECCCCCCHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHCCEEEE
T ss_conf 344799999999859958999824240347631304531179999999749-9988999537886368888760871588
Q ss_pred ECC-CCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHH-------HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 046-740121554422442156012256554203884899-------97899652622889844489899999999999
Q gi|254780588|r 217 LEH-AIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDL-------QDLSIIDGIIPEPIGGAHRNPAQTISSVGEII 287 (317)
Q Consensus 217 ~~~-s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL-------~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i 287 (317)
T Consensus 157 ~~~~s~l~~aGP~vv~~~~G------------e~~~~eelgG~~~h~~~sGv~d~~~~--------~e~~a~~~~r~~l 215 (487)
T pfam01039 157 VKGTSPMFLTGPDVVKKVTG------------EEVTSEELGGADQHMTKSGVAHLTAS--------DDEDALALIRKLL 215 (487)
T ss_pred ECCCCCEECCCCHHHHHHCC------------CCCCHHHCCCHHHHHCCCCCCCEEEC--------CHHHHHHHHHHHH
T ss_conf 21764332248313343037------------74583433678887424673313305--------8899999999998