HHsearch results for GI: 254780588 and protein with PDBid: 1vrg_A

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=99.87  E-value=1.5e-19  Score=158.15  Aligned_cols=223  Identities=22%  Similarity=0.278  Sum_probs=160.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC---CCC--CC-C-----CCE
Q ss_conf             7769999999999999999974269999988876350022379998622545--067227---533--47-8-----972
Q gi|254780588|r   31 EDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG---DRL--FG-D-----DPA   97 (317)
Q Consensus        31 ~~~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G---Dr~--~~-d-----D~a   97 (317)
                      ....+++++|+++.....     +..--++|..-+..+|.+.++.|+.|+|+  |+|+.-   .+.  +. +     ..+
T Consensus        13 m~~~~~i~el~~r~~~~~-----~~Gg~~~v~k~~~~GkltaRERi~~LlD~gSF~E~g~l~~~~~~~~~~~~~~~~~dg   87 (527)
T 1vrg_A           13 MSLRDKIEELKKIEKEIE-----QGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDG   87 (527)
T ss_dssp             CCHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEECTTCCCCCCGGGGGGCCCGGGG
T ss_pred             CCHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             668999999999999999-----748999999999729999999999965799874775431547755453345588871


Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             99998875380089998458775023442026776836899999999999971994899995353246778430027999
Q gi|254780588|r   98 MQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA  177 (317)
Q Consensus        98 ii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~a  177 (317)
                      +|+|+|+|+|++|+|++++..        ..+|.+.+...+|..|.+++|.+.++|+|.|+|+.|+....+.+--.+...
T Consensus        88 vV~G~G~I~Gr~v~v~a~D~t--------v~gGS~g~~~~~k~~~~~~~A~~~~lPlV~l~~sgGar~~eg~~~l~~~g~  159 (527)
T 1vrg_A           88 VITGVGEINGRKVAVFSQDFT--------VMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALAGYGE  159 (527)
T ss_dssp             EEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEEEECCC--------EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf             899999999999999998787--------704077889999999999999965998899855788776555421244069


Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE-CCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHH-
Q ss_conf             9999888623799889999616777754211332000220-46740121554422442156012256554203884899-
Q gi|254780588|r  178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYML-EHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDL-  255 (317)
Q Consensus       178 ia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~-~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL-  255 (317)
                      +......++ ..||+|++|+|.+.+|+|+.++++|.++|. +.|...+.+|---            +++-.-.+++.+| 
T Consensus       160 i~~~~~~~s-g~vP~Isvv~Gp~~GG~A~~~~~~d~vim~~~~a~i~~aGP~vV------------~~~tGe~v~~eelG  226 (527)
T 1vrg_A          160 IFLRNTLAS-GVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVI------------KAVTGEEISQEDLG  226 (527)
T ss_dssp             HHHHHHHHT-TTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHH------------HHHHCCCCCHHHHH
T ss_pred             HHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCEEEECCHHHH------------HHHCCCCCCHHHCC
T ss_conf             999999966-99988999417876078777886885899617745871477889------------88607625856557


Q ss_pred             ------HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             ------97899652622889844489899999999999
Q gi|254780588|r  256 ------QDLSIIDGIIPEPIGGAHRNPAQTISSVGEII  287 (317)
Q Consensus       256 ------~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i  287 (317)
                            ...|++|.+.+        +-...+..+++.+
T Consensus       227 G~~~h~~~sG~~~~~~~--------~e~~a~~~~r~~l  256 (527)
T 1vrg_A          227 GAMVHNQKSGNAHFLAD--------NDEKAMSLVRTLL  256 (527)
T ss_dssp             BHHHHHHTSCCCSEEES--------SHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCEEEC--------CHHHHHHHHHHHH
T ss_conf             60476422555305421--------1477999999999