HHsearch results for GI: 254780588 and protein with PDBid: 1vrg_A
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=99.87 E-value=1.5e-19 Score=158.15 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC---CCC--CC-C-----CCE
Q ss_conf 7769999999999999999974269999988876350022379998622545--067227---533--47-8-----972
Q gi|254780588|r 31 EDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG---DRL--FG-D-----DPA 97 (317)
Q Consensus 31 ~~~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G---Dr~--~~-d-----D~a 97 (317)
....+++++|+++..... +..--++|..-+..+|.+.++.|+.|+|+ |+|+.- .+. +. + ..+
T Consensus 13 m~~~~~i~el~~r~~~~~-----~~Gg~~~v~k~~~~GkltaRERi~~LlD~gSF~E~g~l~~~~~~~~~~~~~~~~~dg 87 (527)
T 1vrg_A 13 MSLRDKIEELKKIEKEIE-----QGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDG 87 (527)
T ss_dssp CCHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEECTTCCCCCCGGGGGGCCCGGGG
T ss_pred CCHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 668999999999999999-----748999999999729999999999965799874775431547755453345588871
Q ss_pred EEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 99998875380089998458775023442026776836899999999999971994899995353246778430027999
Q gi|254780588|r 98 MQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA 177 (317)
Q Consensus 98 ii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~a 177 (317)
+|+|+|+|+|++|+|++++.. ..+|.+.+...+|..|.+++|.+.++|+|.|+|+.|+....+.+--.+...
T Consensus 88 vV~G~G~I~Gr~v~v~a~D~t--------v~gGS~g~~~~~k~~~~~~~A~~~~lPlV~l~~sgGar~~eg~~~l~~~g~ 159 (527)
T 1vrg_A 88 VITGVGEINGRKVAVFSQDFT--------VMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALAGYGE 159 (527)
T ss_dssp EEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHH
T ss_pred EEEEEEEECCEEEEEEEECCC--------EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 899999999999999998787--------704077889999999999999965998899855788776555421244069
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE-CCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHH-
Q ss_conf 9999888623799889999616777754211332000220-46740121554422442156012256554203884899-
Q gi|254780588|r 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYML-EHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDL- 255 (317)
Q Consensus 178 ia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~-~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL- 255 (317)
+......++ ..||+|++|+|.+.+|+|+.++++|.++|. +.|...+.+|--- +++-.-.+++.+|
T Consensus 160 i~~~~~~~s-g~vP~Isvv~Gp~~GG~A~~~~~~d~vim~~~~a~i~~aGP~vV------------~~~tGe~v~~eelG 226 (527)
T 1vrg_A 160 IFLRNTLAS-GVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVI------------KAVTGEEISQEDLG 226 (527)
T ss_dssp HHHHHHHHT-TTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHH------------HHHHCCCCCHHHHH
T ss_pred HHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCEEEECCHHHH------------HHHCCCCCCHHHCC
T ss_conf 999999966-99988999417876078777886885899617745871477889------------88607625856557
Q ss_pred ------HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ------97899652622889844489899999999999
Q gi|254780588|r 256 ------QDLSIIDGIIPEPIGGAHRNPAQTISSVGEII 287 (317)
Q Consensus 256 ------~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i 287 (317)
...|++|.+.+ +-...+..+++.+
T Consensus 227 G~~~h~~~sG~~~~~~~--------~e~~a~~~~r~~l 256 (527)
T 1vrg_A 227 GAMVHNQKSGNAHFLAD--------NDEKAMSLVRTLL 256 (527)
T ss_dssp BHHHHHHTSCCCSEEES--------SHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCEEEC--------CHHHHHHHHHHHH
T ss_conf 60476422555305421--------1477999999999