HHsearch results for GI: 254780588 and protein with PDBid: 2fbm_A
>2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=98.38 E-value=1.1e-05 Score=59.74 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC--------H-----HHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 77683689999999999997199489999535324-6778430--------0-----27999999988862379988999
Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA--------R-----GQGEAIARATEMCLKLQVPILSI 195 (317)
Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~--------~-----G~~~aia~~l~~~~~~~vP~i~v 195 (317)
...+++-++...+.++.++.-..-+|-|.-.++++ .|.+-.+ . -....+.+.+..+..+..|+|+.
T Consensus 46 Nal~~~~~~eL~~al~~~~~d~~~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (291)
T 2fbm_A 46 NALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS 125 (291)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 79899999999999999873998799997889956748875545322223210237999999999999998679989999
Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHHH-HHHCCCCHHHHHHCCCCCEEE
Q ss_conf 96167777542113320002204674012------1554422442156---0122565-542038848999789965262
Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQA-AIAMKIIATDLQDLSIIDGII 265 (317)
Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~eA-AealklTa~DL~~lGiID~II 265 (317)
|-|-+.+||..-...||.+++.++++|+. +.|.++++.++.. ..++.+. -..-.++|.+++++|+||+|+
T Consensus 126 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gi~p~~~~~~~l~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv 205 (291)
T 2fbm_A 126 VNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVF 205 (291)
T ss_dssp ECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEE
T ss_pred ECCEECCCCCCEEECCCEECCCHHHHHHHHHCEECCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEEE
T ss_conf 79910318873002356530144333231120006534654431004550456887999808724599999849930870
Q ss_pred CC
Q ss_conf 28
Q gi|254780588|r 266 PE 267 (317)
Q Consensus 266 ~E 267 (317)
|.
T Consensus 206 ~~ 207 (291)
T 2fbm_A 206 LT 207 (291)
T ss_dssp CS
T ss_pred CH
T ss_conf 82