HHsearch results for GI: 254780588 and protein with PDBid: 2gtr_A

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=98.35  E-value=8e-06  Score=60.82  Aligned_cols=137  Identities=18%  Similarity=0.253  Sum_probs=96.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC-------------HHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             77683689999999999997199489999535324-6778430-------------027999999988862379988999
Q gi|254780588|r  130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA-------------RGQGEAIARATEMCLKLQVPILSI  195 (317)
Q Consensus       130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~-------------~G~~~aia~~l~~~~~~~vP~i~v  195 (317)
                      ..++++-++-....++.++.-..-+|-+--.++++ .|.+-.+             ......+.+.+..+..+.+|+|+.
T Consensus        28 Nal~~~~~~el~~al~~~~~d~~~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa  107 (261)
T 2gtr_A           28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA  107 (261)
T ss_dssp             TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             58899999999999999862997699997899864668887354221123320247899999988767875099989999


Q ss_pred             EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHH-HHHHCCCCHHHHHHCCCCCEEE
Q ss_conf             96167777542113320002204674012------1554422442156---012256-5542038848999789965262
Q gi|254780588|r  196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQ-AAIAMKIIATDLQDLSIIDGII  265 (317)
Q Consensus       196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~e-AAealklTa~DL~~lGiID~II  265 (317)
                      |-|.+.+||+.-...||.++|.++++|+.      +.|.++++-++..   ..++.+ +-..-.++|++++++|+||+|+
T Consensus       108 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv  187 (261)
T 2gtr_A          108 VNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVF  187 (261)
T ss_dssp             ECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred             ECCEEEECCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf             87814662117530001412335456553210147778843477899981952224542356767788997679736870


Q ss_pred             C
Q ss_conf             2
Q gi|254780588|r  266 P  266 (317)
Q Consensus       266 ~  266 (317)
                      |
T Consensus       188 ~  188 (261)
T 2gtr_A          188 W  188 (261)
T ss_dssp             C
T ss_pred             C
T ss_conf             8