HHsearch results for GI: 254780588 and protein with PDBid: 3gf3_A

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=99.90  E-value=3.2e-22  Score=177.18  Aligned_cols=232  Identities=16%  Similarity=0.231  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC-----CCCCCCCCEEEEEEEEECC
Q ss_conf             999999999999999974269999988876350022379998622545--067227-----5334789729999887538
Q gi|254780588|r   35 EEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG-----DRLFGDDPAMQIGLARFHG  107 (317)
Q Consensus        35 ~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G-----Dr~~~dD~aii~G~a~i~g  107 (317)
                      +++.++.+++.+..++....-  .+.++..+...|...++.|+.|+|+  |+|++.     +..+..| ++|+|+|+|+|
T Consensus        29 ~~~~~~~~~l~~~~~~~~~~g--~~~~~k~h~rGkltaRERI~~LlD~gSF~E~~~l~~~~~~~~~~~-gvV~G~G~I~G  105 (588)
T 3gf3_A           29 QEIKAVESDIHESIKKALDAG--ITSEEKLNERGQLSAMQRINALIDPGTWCPLNSLFNPENNKFGTT-NIVNGLGRVDG  105 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCS--SSCHHHHHHTTCCCHHHHHHHHSCTTCCEEESTTCCTTCCTTSSC-SEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCC-CEEEEEEEECC
T ss_conf             999999999999999987367--767998997199999999999658997501266672046888998-68999999999


Q ss_pred             CEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC----HHHHHHHHHHHH
Q ss_conf             0089998458775023442026776836899999999999971994899995353246778430----027999999988
Q gi|254780588|r  108 QPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA----RGQGEAIARATE  183 (317)
Q Consensus       108 ~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~----~G~~~aia~~l~  183 (317)
                      ++|+|++||-.        ..+|++++.+.+|.+|++++|.++++|+|+|+|++|+..+.+.+.    .+ ...+..+..
T Consensus       106 r~V~V~a~D~t--------v~gGS~g~~~~~K~~r~~e~A~~~~lP~V~l~dsgGaRl~e~~~~~~~~~~-~g~~~~~~~  176 (588)
T 3gf3_A          106 KWVYIVASDNK--------KMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRG-GGTPFFRNS  176 (588)
T ss_dssp             EEEEEEEECTT--------SGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTS-TTHHHHHHH
T ss_pred             EEEEEEEECCC--------CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHH
T ss_conf             99999999782--------115697878989999999999985989799944787666654223530444-438999999


Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCC---CCHHHHHHH------HHC---CCC
Q ss_conf             86237998899996167777542113320002204674012155442244215---601225655------420---388
Q gi|254780588|r  184 MCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWR---DSSRAAQAA------IAM---KII  251 (317)
Q Consensus       184 ~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwk---d~~~a~eAA------eal---klT  251 (317)
                      +++...||+|++|+|.+.+|||+..+.+|.++|.+++...+..|.--..-.-+   +..-.++..      +.+   .+-
T Consensus       177 ~~s~~~iP~Isvv~G~~~gG~a~~a~s~~~ii~~~~a~i~l~GP~vv~~~~g~~~~~~~~g~~~~~~~~~~e~l~~~~lg  256 (588)
T 3gf3_A          177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPG  256 (588)
T ss_dssp             HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHCCCCCEEEEECCCCCCCCCEEECCCCCCEEECCEEEEECCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             98569997799945776666530120465323524347997282353035774334311245554300222210234577


Q ss_pred             HHHH--HHCCCCCEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             4899--9789965262288984448989999999999
Q gi|254780588|r  252 ATDL--QDLSIIDGIIPEPIGGAHRNPAQTISSVGEI  286 (317)
Q Consensus       252 a~DL--~~lGiID~II~EP~GGAHrd~~~~~~~lk~~  286 (317)
                      ..++  .+.|++|.+.+        |-......+++.
T Consensus       257 ga~~h~~~sGv~d~va~--------de~~a~~~~r~~  285 (588)
T 3gf3_A          257 SVPIHYDETGFFREVYQ--------NDLGVIDGIKKY  285 (588)
T ss_dssp             BHHHHTTTSCCSCEEES--------SHHHHHHHHHHH
T ss_pred             CHHHHHHCCCCCCCCCC--------CHHHHHHHHHHH
T ss_conf             43544202465410247--------879999988889