HHsearch results for GI: 254780588 and protein with PDBid: 3gf3_A
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=99.90 E-value=3.2e-22 Score=177.18 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC-----CCCCCCCCEEEEEEEEECC
Q ss_conf 999999999999999974269999988876350022379998622545--067227-----5334789729999887538
Q gi|254780588|r 35 EEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG-----DRLFGDDPAMQIGLARFHG 107 (317)
Q Consensus 35 ~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G-----Dr~~~dD~aii~G~a~i~g 107 (317)
+++.++.+++.+..++....- .+.++..+...|...++.|+.|+|+ |+|++. +..+..| ++|+|+|+|+|
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~g--~~~~~k~h~rGkltaRERI~~LlD~gSF~E~~~l~~~~~~~~~~~-gvV~G~G~I~G 105 (588)
T 3gf3_A 29 QEIKAVESDIHESIKKALDAG--ITSEEKLNERGQLSAMQRINALIDPGTWCPLNSLFNPENNKFGTT-NIVNGLGRVDG 105 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS--SSCHHHHHHTTCCCHHHHHHHHSCTTCCEEESTTCCTTCCTTSSC-SEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCC-CEEEEEEEECC
T ss_conf 999999999999999987367--767998997199999999999658997501266672046888998-68999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC----HHHHHHHHHHHH
Q ss_conf 0089998458775023442026776836899999999999971994899995353246778430----027999999988
Q gi|254780588|r 108 QPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA----RGQGEAIARATE 183 (317)
Q Consensus 108 ~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~----~G~~~aia~~l~ 183 (317)
++|+|++||-. ..+|++++.+.+|.+|++++|.++++|+|+|+|++|+..+.+.+. .+ ...+..+..
T Consensus 106 r~V~V~a~D~t--------v~gGS~g~~~~~K~~r~~e~A~~~~lP~V~l~dsgGaRl~e~~~~~~~~~~-~g~~~~~~~ 176 (588)
T 3gf3_A 106 KWVYIVASDNK--------KMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRG-GGTPFFRNS 176 (588)
T ss_dssp EEEEEEEECTT--------SGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTS-TTHHHHHHH
T ss_pred EEEEEEEECCC--------CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHH
T ss_conf 99999999782--------115697878989999999999985989799944787666654223530444-438999999
Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCC---CCHHHHHHH------HHC---CCC
Q ss_conf 86237998899996167777542113320002204674012155442244215---601225655------420---388
Q gi|254780588|r 184 MCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWR---DSSRAAQAA------IAM---KII 251 (317)
Q Consensus 184 ~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwk---d~~~a~eAA------eal---klT 251 (317)
+++...||+|++|+|.+.+|||+..+.+|.++|.+++...+..|.--..-.-+ +..-.++.. +.+ .+-
T Consensus 177 ~~s~~~iP~Isvv~G~~~gG~a~~a~s~~~ii~~~~a~i~l~GP~vv~~~~g~~~~~~~~g~~~~~~~~~~e~l~~~~lg 256 (588)
T 3gf3_A 177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPG 256 (588)
T ss_dssp HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTT
T ss_pred HHHCCCCCEEEEECCCCCCCCCEEECCCCCCEEECCEEEEECCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 98569997799945776666530120465323524347997282353035774334311245554300222210234577
Q ss_pred HHHH--HHCCCCCEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4899--9789965262288984448989999999999
Q gi|254780588|r 252 ATDL--QDLSIIDGIIPEPIGGAHRNPAQTISSVGEI 286 (317)
Q Consensus 252 a~DL--~~lGiID~II~EP~GGAHrd~~~~~~~lk~~ 286 (317)
..++ .+.|++|.+.+ |-......+++.
T Consensus 257 ga~~h~~~sGv~d~va~--------de~~a~~~~r~~ 285 (588)
T 3gf3_A 257 SVPIHYDETGFFREVYQ--------NDLGVIDGIKKY 285 (588)
T ss_dssp BHHHHTTTSCCSCEEES--------SHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCC--------CHHHHHHHHHHH
T ss_conf 43544202465410247--------879999988889