RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase
carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
(317 letters)
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 303 bits (776), Expect = 5e-83
Identities = 153/317 (48%), Positives = 213/317 (67%), Gaps = 2/317 (0%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSRED--INEDFSEEIRELEAMVCKTLSEIYSKLTPW 58
++LDFE+PI++LEAKI L SR+D ++ + EE+ L + +I++ L W
Sbjct: 22 SLNFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAW 81
Query: 59 QKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKG 118
Q Q++RHP RP+ +DY+ F F LAGDR + DD A+ G+AR G+PV IIG +KG
Sbjct: 82 QIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKG 141
Query: 119 SDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAI 178
+TK +I+ NFG P PEGYRKA+RLM+MA+RFK+P+I+FIDT GAYPGV AE RGQ EAI
Sbjct: 142 RETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAI 201
Query: 179 ARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDS 238
AR +L VP++ +IGEGGSGGA+ I + V ML+++ YSVISPEG ASILW+ +
Sbjct: 202 ARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSA 261
Query: 239 SRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYS 298
+A AA AM II L++L +ID IIPEP+GGAHRNP +S+ + L++ S
Sbjct: 262 DKAPLAAEAMGIIRPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLS 321
Query: 299 ETEIREHRRQKYLNIGR 315
+++ R Q+ ++ G
Sbjct: 322 TEDLKNRRYQRLMSYGY 338
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 269 bits (688), Expect = 7e-73
Identities = 148/315 (46%), Positives = 202/315 (64%), Gaps = 1/315 (0%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60
LDFE+P+ ++ KI LK+ ++ + D EEI LEA + + +IY+ L PW +
Sbjct: 11 RGSMLDFEKPLFEIRNKIESLKESQDKN-DVDLQEEIDMLEASLERETKKIYTNLKPWDR 69
Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
Q++R RP +DYI +F F+ L GDR F DDPAM G+ +G+ V +IGQ++G D
Sbjct: 70 VQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD 129
Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180
TK I NFG PEGYRKA+RLM+ A++F P+ +FIDT GAYPG AE RGQ E+IA
Sbjct: 130 TKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIAT 189
Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240
L+VP+++I+IGEGGSGGA+GI AN V MLE++ YSVISPEGAA++LW+DS+
Sbjct: 190 NLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNL 249
Query: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300
A AA MKI A D++ L IID +I EP+GGAH++ Q ++ L + S
Sbjct: 250 AKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRD 309
Query: 301 EIREHRRQKYLNIGR 315
EI R +K+ NIG
Sbjct: 310 EIANDRFEKFRNIGS 324
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 152 bits (384), Expect = 1e-37
Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 26/235 (11%)
Query: 57 PWQKTQVSRHPNRPHYI-DYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQ 115
T V N+P+ + I + LF P + G R G+PV I+
Sbjct: 282 AELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFA--PNILTGFGRVEGRPVGIVAN 339
Query: 116 EKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQG 175
+ G KA R + D F +PV++F+D G PGVD E G
Sbjct: 340 QP--------MQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGII 391
Query: 176 EAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAA 231
A+ + VP++++I + G + + + A+ A +V+ +GA
Sbjct: 392 RRGAKLIFAYAEATVPLITVITRKAFGGAYVVMGSKHLGADLNLAWPTAQIAVMGAQGAV 451
Query: 232 SILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHR-------NPAQT 279
+IL R + A AT + + + + P A R P+ T
Sbjct: 452 NILHRRTIADAGDDAE----ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDT 502
Score = 48.1 bits (114), Expect = 3e-06
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 97 AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153
+ G G+PVA+ Q+ G G+ +K V++M+ A + P
Sbjct: 86 GVVTGYGTVDGRPVAVFSQDFTVFG-----------GALGEVYGQKIVKVMDFALKTGCP 134
Query: 154 VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213
V+ D+ GA + G I R +P +S+++G G A +F
Sbjct: 135 VVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITDF 193
Query: 214 VYMLEH-AIYSVISPE 228
M++ + + P+
Sbjct: 194 TVMVDQTSHMFITGPD 209
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 142 bits (360), Expect = 7e-35
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)
Query: 66 HPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRI 125
+ Y + G + AR +G+ V I+ +
Sbjct: 284 IDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPS------- 336
Query: 126 KHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMC 185
G KA + D F IP++ +D G PGV E G A+
Sbjct: 337 -VMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAY 395
Query: 186 LKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILWRDSSRA 241
+ VP +++++ + G + + A+ VY A +V+ EGAA++++R +A
Sbjct: 396 SEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKA 455
Query: 242 AQAAIAMKIIATDLQDLSI-----------IDGIIPEPIGGAHRNPAQTISSVGEIISQF 290
A AM+ + + +D +I PA T + + +
Sbjct: 456 ADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID---------PADTRRKIASALEMY 506
Query: 291 LS 292
+
Sbjct: 507 AT 508
Score = 48.2 bits (114), Expect = 3e-06
Identities = 35/160 (21%), Positives = 52/160 (32%), Gaps = 23/160 (14%)
Query: 80 FTHFISLAG--DRLFGDDP------AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHN 128
F + LFG D + G G+PV Q+ G
Sbjct: 59 FDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMG---------- 108
Query: 129 FGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKL 188
GS K V ME A P + F D+ GA ++ + A
Sbjct: 109 -GSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSG- 166
Query: 189 QVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPE 228
VP ++II G G + A +F+ M + A + P+
Sbjct: 167 VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQ 206
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans och 114}
Length = 531
Score = 140 bits (353), Expect = 5e-34
Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 28/199 (14%)
Query: 92 FGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFK 151
+ G R G+ V ++ + G + RKA R + D F+
Sbjct: 322 EEFAKNIITGFIRLEGRTVGVVANQP--------LVLAGCLDIDSSRKAARFVRFCDAFE 373
Query: 152 IPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA- 210
IP+++ ID G PG E G + A+ + VP++++I + G + +++
Sbjct: 374 IPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSK 433
Query: 211 ---ANFVYMLEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQD-------LSI 260
A+F Y A +V+ +GA I+ R + +
Sbjct: 434 HLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGF 493
Query: 261 IDGIIPEPIGGAHRNPAQT 279
+D +I P T
Sbjct: 494 VDEVIQ---------PRST 503
Score = 51.6 bits (123), Expect = 2e-07
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 97 AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153
+ G +G+ V + Q+ G GS +K ++M+MA + P
Sbjct: 94 GVVTGWGTINGRVVYVFSQDFTVLG-----------GSVSETHSKKICKIMDMAMQNGAP 142
Query: 154 VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213
VI D+ GA ++ + + M + VP +S+I+G G A +F
Sbjct: 143 VIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGV-VPQISMIMGPCAGGAVYSPAMTDF 201
Query: 214 VYMLEHAIYSVISP 227
++M++ + Y ++
Sbjct: 202 IFMVKDSSYMFVTG 215
>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC;
polyketide, polyketide synthase, acyl-COA carboxylase,
carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces
coelicolor} SCOP: c.14.1.4 c.14.1.4 PDB: 1xnv_A* 1xo6_A
1xnw_A
Length = 530
Score = 131 bits (331), Expect = 1e-31
Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 26/248 (10%)
Query: 57 PWQKTQVSRHPNRPHYI-DYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQ 115
T V N+P+ + I + LF P + G R G+PV I+
Sbjct: 282 AELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFA--PNILTGFGRVEGRPVGIVAN 339
Query: 116 EKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQG 175
+ G KA R + D F +PV++F+D G PGVD E G
Sbjct: 340 QP--------MQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGII 391
Query: 176 EAIARATEMCLKLQVPILSIIIGEGGSGGAMGIA----AANFVYMLEHAIYSVISPEGAA 231
A+ + VP++++I + G + A+ A +V+ +GA
Sbjct: 392 RRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAV 451
Query: 232 SILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHR-------NPAQTISSVG 284
+IL R + A AT + + + + P A R P+ T +
Sbjct: 452 NILHRRTIADAGDDAE----ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 507
Query: 285 EIISQFLS 292
+ Q +
Sbjct: 508 RGLRQLRT 515
Score = 36.7 bits (84), Expect = 0.007
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 97 AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153
+ G G+PVA+ Q+ G G+ +K V++M+ A + P
Sbjct: 86 GVVTGYGTVDGRPVAVFSQDFTVFG-----------GALGEVYGQKIVKVMDFALKTGCP 134
Query: 154 VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213
V+ D+ GA + G I R +P +S+++G G A +F
Sbjct: 135 VVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITDF 193
Query: 214 VYMLEH 219
M++
Sbjct: 194 TVMVDQ 199
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 127 bits (321), Expect = 2e-30
Identities = 52/264 (19%), Positives = 90/264 (34%), Gaps = 34/264 (12%)
Query: 63 VSRHPNRP--HYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
+ PN+P + L F+ + + +G R G+PV I+ +
Sbjct: 304 IPDSPNQPYDMHEVITRLLDDEFLEIQAGY----AQNIVVGFGRIDGRPVGIVANQP--- 356
Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180
H G KA R + D F IP++ +D G PG D E G A+
Sbjct: 357 -----THFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAK 411
Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILWR 236
+ VP +++I + G + + + A +V+ GA ++R
Sbjct: 412 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYR 471
Query: 237 DSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHR-------NPAQTISSVGEIISQ 289
A AA I L+ + + P A R P+ T +G +
Sbjct: 472 Q-QLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRL 530
Query: 290 FLSETSTYSETEIREHRRQKYLNI 313
E +I + +K+ N+
Sbjct: 531 L--------ERKIAQLPPKKHGNV 546
Score = 41.3 bits (96), Expect = 3e-04
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 97 AMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS 156
+ G G+ V I Q+ GS K V++ E+A + P+I
Sbjct: 97 GVVTGYGTIDGRDVCIFSQD--------ATVFGGSLGEVYGEKIVKVQELAIKTGRPLIG 148
Query: 157 FIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYM 216
D AGA + G I R + +P +S+I+G G A +FV M
Sbjct: 149 INDGAGARIQEGVVSLGLYSRIFRNNIL-ASGVIPQISLIMGAAAGGHVYSPALTDFVIM 207
Query: 217 LEH 219
++
Sbjct: 208 VDQ 210
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP:
c.14.1.4 c.14.1.4
Length = 527
Score = 124 bits (311), Expect = 3e-29
Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 26/220 (11%)
Query: 63 VSRHPNRPHYI-DYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDT 121
+ +PN+ + + D I + H F + IG AR G+ V I+ +
Sbjct: 286 LPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFA--KNIVIGFARIQGKTVGIVANQP---- 339
Query: 122 KSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARA 181
G + KA R + D F IP+++F+DT G PGV E G A+
Sbjct: 340 ----SVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKL 395
Query: 182 TEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILWRD 237
+ VP +++I+ + G + + + A+ V A +V+ PEGAA+I+++
Sbjct: 396 LYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKR 455
Query: 238 SSRAAQAAIAMKIIATDLQDLSI-----------IDGIIP 266
A+ + + +D +I
Sbjct: 456 EIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495
Score = 38.6 bits (89), Expect = 0.002
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 97 AMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS 156
+ G+ +G+ VA+ Q+ GS +K V+L+++A + IPVI
Sbjct: 87 GVITGVGEINGRKVAVFSQD--------FTVMGGSLGEMHAKKIVKLLDLALKMGIPVIG 138
Query: 157 FIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYM 216
D+ GA +A I + + VP +++I G G A +F+ M
Sbjct: 139 INDSGGARIQEGVDALAGYGEIFLRNTLASGV-VPQITVIAGPCAGGAVYSPALTDFIVM 197
Query: 217 LEH 219
++
Sbjct: 198 VDQ 200
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase;
2.20A {Sulfolobus tokodaii str}
Length = 522
Score = 122 bits (306), Expect = 1e-28
Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)
Query: 63 VSRHPNRPHYIDYINSLFT---HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGS 119
V +P+ + I F+ + + +G AR G V I+
Sbjct: 281 VPNDAAKPYNMREIIYKIVDNGEFLEVH----KHWAQNIIVGFARIAGNVVGIVAN---- 332
Query: 120 DTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIA 179
+ GS + KA R + D F IP+IS +DT G PG D E +G A
Sbjct: 333 ----NPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGA 388
Query: 180 RATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILW 235
+ + VP +++I+ + G + ++ A+ VY A +V PEGA IL+
Sbjct: 389 KMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILY 448
Query: 236 R-DSSRAAQAAIAMKIIATDLQDLS----------IIDGIIP 266
R + +A+ +K + + L ++D +I
Sbjct: 449 RKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIE 490
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 118 bits (296), Expect = 2e-27
Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 13/208 (6%)
Query: 63 VSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKG---- 118
+ + RP+ I + + + + G P M GLA+ +G V +I +G
Sbjct: 316 IPMNQKRPYDIYEVIARLFDNSEFSEYK-KGYGPEMVTGLAKVNGLLVGVIANVQGLLMN 374
Query: 119 -SDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA 177
+ K G +G K + + R +IP+I DT G G +AE
Sbjct: 375 YPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGL 434
Query: 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYML--EHAIYSVISPEGAA 231
++P L I I + + + V+ + Y V+ E AA
Sbjct: 435 GQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAA 494
Query: 232 SILWR-DSSRAAQAAIAMKIIATDLQDL 258
+ ++ +A +A ++ I + D+
Sbjct: 495 NAMYSRKLVKAKKAGEDLQPIIGKMNDM 522
Score = 65.5 bits (159), Expect = 2e-11
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 14/153 (9%)
Query: 80 FTHFISLAG--DRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGY 137
+ SL + FG + GL R G+ V I+ + K G+ P
Sbjct: 77 WCPLNSLFNPENNKFGTT-NIVNGLGRVDGKWVYIVASD--------NKKMAGAWVPGQA 127
Query: 138 RKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA---RGQGEAIARATEMCLKLQVPILS 194
+R + A +P+I ++ +G + R G +L +P++
Sbjct: 128 ENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIV 187
Query: 195 IIIGEGGSGGAMGIAAANFVYMLEHAIYSVISP 227
I G +GG + + + A +V
Sbjct: 188 GIYGTNPAGGGYHSISPTILIAHQDANMAVGGA 220
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 117 bits (294), Expect = 3e-27
Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 16/203 (7%)
Query: 57 PWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQE 116
+ + + + P M GLA+ +G V ++
Sbjct: 310 YSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGY----GPEMVTGLAKVNGLLVGVVANV 365
Query: 117 KGSDTK------SRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAE 170
+G + G +G K + + R ++P++ DT G G DAE
Sbjct: 366 QGLLMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAE 425
Query: 171 ARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAA------NFVYMLEHAIYSV 224
+P I + +G + + F +V
Sbjct: 426 KAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAV 485
Query: 225 ISPEGAASILWRDSSRAAQAAIA 247
++ E AA+ ++ + A
Sbjct: 486 MNGETAATAMYSRRLAKDRKAGK 508
Score = 81.3 bits (200), Expect = 2e-16
Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 26/230 (11%)
Query: 6 DFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYS-----KLTPWQK 60
+ + + + + + + E + + EEI +L + +LT Q+
Sbjct: 8 RYFQNMPQVGKPLKKADAANEEQL-KKIEEEIHQLIKEAQEAGKADADVNKRGELTALQR 66
Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
+ P ++ +LF G++ A+ GL R +G+ ++ +
Sbjct: 67 IEKLVEPGSWRPLN---TLFNP----QGNKNGSV--AIVKGLGRVNGKWCVVVASD---- 113
Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA---RGQGEA 177
K G+ P +R + A +P++ ++ +G + R G
Sbjct: 114 ----NKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGT 169
Query: 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISP 227
+L +P++ I G +GG + + E A +V
Sbjct: 170 PFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGA 219
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT,
tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A
1uyv_A
Length = 758
Score = 114 bits (287), Expect = 2e-26
Identities = 32/255 (12%), Positives = 70/255 (27%), Gaps = 25/255 (9%)
Query: 12 SDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPH 71
DL ++ +S + I E + + + + + +
Sbjct: 320 DDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETES 379
Query: 72 YIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQE--------------K 117
+Y F + +G AR G P+ +IG E
Sbjct: 380 GFEYGLFDKGSFFETLSGW----AKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANP 435
Query: 118 GSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA 177
S + ++ A + + + ++P++ + G G +
Sbjct: 436 NSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKY 495
Query: 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAAN-------FVYMLEHAIYSVISPEGA 230
+ + + + PI+ I G G + +Y +A V+ P+G
Sbjct: 496 GSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGM 555
Query: 231 ASILWRDSSRAAQAA 245
I +R
Sbjct: 556 VGIKFRREKLLDTMN 570
Score = 43.2 bits (101), Expect = 7e-05
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 107 GQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPG 166
G+ ++ + I GS P+ ++ E A + IP I +GA G
Sbjct: 104 GRQFVVVAND--------ITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIG 155
Query: 167 VDAEARGQG 175
+ E
Sbjct: 156 MAEEIVPLF 164
>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid
metabolism, alternative splicing, ATP-binding, biotin,
fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens}
Length = 760
Score = 111 bits (279), Expect = 2e-25
Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 24/223 (10%)
Query: 57 PWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQE 116
P HP + + F H + + G AR G PV +I E
Sbjct: 354 PRWMLAGRPHPTLKG--TWQSGFFDHGSFKEIMAPWA--QTVVTGRARLGGIPVGVIAVE 409
Query: 117 KGSDTK-------------SRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGA 163
+ I+ P+ K + ++ +R K+P++ F + G
Sbjct: 410 TRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGF 469
Query: 164 YPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAAN-------FVYM 216
G+ + A + + + PIL I G + +Y
Sbjct: 470 SGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIPPYAELRGGSWVVIDATINPLCIEMYA 529
Query: 217 LEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLS 259
+ + V+ PEG I +R ++ L
Sbjct: 530 DKESRGGVLEPEGTVEIKFRKKDLIKSMRRIDPAYKKLMEQLG 572
Score = 42.8 bits (100), Expect = 1e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 107 GQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPG 166
G+ V +IG + I GS P +R EMA IP I +GA G
Sbjct: 94 GRDVIVIGND--------ITFRIGSFGPGEDLLYLRASEMARAEGIPKIYVAANSGARIG 145
Query: 167 VDAEARGQG 175
+ E +
Sbjct: 146 MAEEIKHMF 154
Score = 27.0 bits (59), Expect = 5.2
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Query: 175 GEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASIL 234
RA+EM +P + + + GA A +M A P L
Sbjct: 116 DLLYLRASEMARAEGIPKIYVA----ANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKYL 171
Query: 235 WRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEI 286
+ + + + +++ +I + IG + + G I
Sbjct: 172 YLTPQDYTRISSLNSVHCKHIEEGGESRYMITDIIGKDDGLGVENLRGSGMI 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.2 bits (104), Expect = 4e-05
Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 62/189 (32%)
Query: 60 KTQVSRHPNRPHYIDYINSLFTHF-------ISLA-GDRLF---GDDPAMQI-GLA---R 104
+ QV + ++ NS H ISL G + G P + GL R
Sbjct: 346 QEQVQDY------VNKTNS---HLPAGKQVEISLVNGAKNLVVSG--PPQSLYGLNLTLR 394
Query: 105 FHGQPVAIIGQEK--GSDTKSRIKHNF---GSPRPEGY-RKAV-RLME---------MAD 148
P + + Q + S+ K + + F SP A + + A
Sbjct: 395 KAKAP-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 149 RFKIPVISFIDTAGAYPGVDAEARGQGEAI-ARATEMCLKLQV--------PILSIIIGE 199
+IPV + DT + G D R +I R + ++L V I+ +
Sbjct: 454 DIQIPV--Y-DT---FDGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--D 503
Query: 200 GGSGGAMGI 208
G GGA G+
Sbjct: 504 FGPGGASGL 512
Score = 40.7 bits (95), Expect = 4e-04
Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 88/215 (40%)
Query: 30 NEDFSEEIREL--------------EAMVCKTLSE-------IYSK---LTPWQKTQVSR 65
+D+ EE+R+L A L ++++ + W + +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 66 HPNRPHYIDYINS------L-----FTHFISLAGDRLFGDDPA-MQIGLARF-----HGQ 108
P++ DY+ S L H++ A +L G P ++ + H Q
Sbjct: 226 -PDK----DYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELR---SYLKGATGHSQ 275
Query: 109 PV---AIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS---FIDTAG 162
+ I + +D+ + RKA+ ++ F I V + +T+
Sbjct: 276 GLVTAVAIAE---TDSWESFFVSV--------RKAITVL-----FFIGVRCYEAYPNTSL 319
Query: 163 AYPGV--DAEARGQGEAIARATEMCLKLQVPILSI 195
P + D+ +G + P+LSI
Sbjct: 320 P-PSILEDSLENNEG----VPS--------PMLSI 341
Score = 33.0 bits (75), Expect = 0.087
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 35/101 (34%)
Query: 226 SPEGAASILWRDSSRAAQAAIAMKIIA------------TDLQDL-SIIDGIIPEPIGGA 272
+ + S L+R A A +++A +L+DL ++ +
Sbjct: 137 FDKKSNSALFR----AVGEGNA-QLVAIFGGQGNTDDYFEELRDLYQTYHVLV-GDL--- 187
Query: 273 HRNPAQTISSVGEIISQFLSETSTYSETEIREHRRQKYLNI 313
I E +S+ + T E + LNI
Sbjct: 188 -------IKFSAETLSELIRTTLD------AEKVFTQGLNI 215
Score = 30.3 bits (68), Expect = 0.66
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 35/100 (35%)
Query: 217 LEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQD--LSIIDGIIPEPIGG-AH 273
LEH + V P + A+Q LQ+ I+ PEP G A
Sbjct: 16 LEHVL-LV--PTA----SF---FIASQ-----------LQEQFNKIL----PEPTEGFAA 50
Query: 274 RNPAQTISSVGEIISQFLSETSTYSETEIREHRRQKYLNI 313
+ ++ E++ +FL Y + + + ++ +
Sbjct: 51 DDE---PTTPAELVGKFLG----YVSSLVEPSKVGQFDQV 83
Score = 29.1 bits (65), Expect = 1.3
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 33/122 (27%)
Query: 10 PISDLEAKIHE--LKKLSREDINEDFSEEIRELEAM-----VCKT-----LSEIYSKLTP 57
P++ + H L + + IN+D + A V T L + ++
Sbjct: 422 PVA---SPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 58 WQKTQVSRHPNRPHYIDYINSL-F--THFISLAGDRLFGDDPAMQIG--LAR-FHGQPVA 111
+ R P + + + F TH + D FG A +G R G V
Sbjct: 478 RIVDCIIRLP-----VKWETTTQFKATHIL----D--FGPGGASGLGVLTHRNKDGTGVR 526
Query: 112 II 113
+I
Sbjct: 527 VI 528
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 35.2 bits (80), Expect = 0.021
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%)
Query: 2 RHYLDFEEPISD-----LEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLT 56
R + E I D LEA E +++ ED NE E RE+ +E S+L
Sbjct: 1251 RQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIH-------NEAESQLR 1303
Query: 57 PWQKTQVSRHPNR-PHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQ 115
Q+ + R P +L T+ +++ DD +G+A FHG +
Sbjct: 1304 AAQQQWGNDFYKRDPRIAPLRGALATYGLTI-------DD----LGVASFHGTSTKANDK 1352
Query: 116 EKGSDTKSRIKHNFGSPRPEG 136
+ + +KH G R EG
Sbjct: 1353 NESATINEMMKH-LG--RSEG 1370
Score = 29.8 bits (66), Expect = 0.92
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 170 EARGQGEAIARATEMCLKLQVPILSII 196
EA+G G I ++ LK+ VPI I+
Sbjct: 1179 EAQGAGIQIIMQADLALKMGVPIYGIV 1205
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.6 bits (78), Expect = 0.031
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 5/18 (27%)
Query: 85 SLAGDRLFGDD--PAMQI 100
SL +L+ DD PA+ I
Sbjct: 28 SL---KLYADDSAPALAI 42
Score = 29.2 bits (64), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 6/24 (25%)
Query: 231 ASI-LWRDSSRAAQAAIAMKIIAT 253
AS+ L+ D S A A+ I AT
Sbjct: 27 ASLKLYADDS-----APALAIKAT 45
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein,
CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger,
metal-binding; 1.40A {Rattus norvegicus}
Length = 63
Score = 31.8 bits (72), Expect = 0.20
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSE 50
++ YL+ ++ ++ EAK+ +L K +N S+E+R+L+ + K +E
Sbjct: 12 LQEYLELKKALATSEAKVQQLMK-----VNSSLSDELRKLQREIHKLQAE 56
>3nrz_C Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine,
substrate orientation, hydro oxidoreductase; HET: FAD
MTE HPA; 1.80A {Bos taurus} PDB: 3eub_C* 3b9j_C* 1fiq_C*
3etr_C* 3ns1_C*
Length = 756
Score = 31.6 bits (71), Expect = 0.23
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 91 LFGDDPAMQIGLARFHGQPVAII 113
LF D+ G + +
Sbjct: 78 LFNDETVFAKDTVTCVGHIIGAV 100
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition,
chaperone; 2.80A {Plasmodium falciparum}
Length = 193
Score = 30.8 bits (69), Expect = 0.43
Identities = 7/94 (7%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 18 IHELKKLSRE--DINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK-------TQVSRHPN 68
+ + + + ++ ++ + E ++ + ++ K + + +HP
Sbjct: 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 69 RPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGL 102
+ + H + L ++ + +I
Sbjct: 62 LSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITF 95
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, chaperone;
2.30A {Plasmodium falciparum 3D7} PDB: 3hfd_A 3gyw_A
3gyv_A
Length = 359
Score = 29.6 bits (66), Expect = 0.93
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 7 FEEPISDLEAKIHE----LKKLSRE--DINEDFSEEIRELEAMVCKTLSEIYSK 54
+++ ++DL + E LK +E D F E+ L IY K
Sbjct: 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDK 93
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
cytoplasm, nucleotide- binding, hydrolase; HET: ADP;
3.11A {Methanocaldococcus jannaschii}
Length = 285
Score = 29.2 bits (65), Expect = 1.2
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 135 EGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILS 194
EG + ++A + K P I FID A +A G+ + T M L L+
Sbjct: 94 EGASLVKDIFKLA-KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL------LA 146
Query: 195 IIIGEGGSGGAMGIAAANFVYMLEHAI 221
+ G G I A N +L+ AI
Sbjct: 147 EMDGFDARGDVKIIGATNRPDILDPAI 173
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 29.1 bits (64), Expect = 1.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 92 FGDDPAMQIGLARFHGQPVAII 113
+P + G F GQP+ ++
Sbjct: 80 PSPEPVLATGEVHFVGQPIFLV 101
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, glycolysis, lyase, structural
genomics; HET: CIT; 2.10A {Babesia bovis}
Length = 379
Score = 28.7 bits (64), Expect = 1.7
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 143 LMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVP 191
+ D + + + GVD + + + + T L+ VP
Sbjct: 233 FKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVGFLTSRALRRTVP 281
>2nz6_A Receptor-type tyrosine-protein phosphatase ETA; hydrolase receptor
type tyrosine phosphatase J, PTPRJ, glycoprotein,
structural genomics; 2.30A {Homo sapiens} PDB: 2cfv_A
Length = 316
Score = 28.6 bits (63), Expect = 1.8
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 10 PISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEI-----------YSKLTPW 58
+ + EA + + D N F+EE +L+ + Y+ + P+
Sbjct: 27 RVENFEAYFKKQQA----DSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPY 82
Query: 59 QKTQVSRHPNRPHYIDYINSLFTH 82
++V DYIN+ +
Sbjct: 83 DISRVKLSVQTHSTDDYINANYMP 106
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation,
PP2A regulatory subunit; 2.60A {Homo sapiens} SCOP:
a.118.1.20
Length = 392
Score = 28.2 bits (63), Expect = 2.2
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFG 93
SE+ RE + + TL IY K R + IN++F FI + G
Sbjct: 185 SEDPRERD-FLKTTLHRIYGKFLG----------LRAYIRKQINNIFYRFIYE-TEHHNG 232
Query: 94 DDPAMQIGLARFHGQPVAI 112
++I + +G + +
Sbjct: 233 IAELLEILGSIINGFALPL 251
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction
intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A
{Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1
d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C*
3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A*
3eub_A* 3etr_A*
Length = 1332
Score = 28.5 bits (63), Expect = 2.3
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 91 LFGDDPAMQIGLARFHGQPVAII 113
LF D+ G + +
Sbjct: 648 LFNDETVFAKDTVTCVGHIIGAV 670
>2npp_B PP2A, B, serine/threonine-protein phosphatase 2A 56 kDa regulatory
subunit gamma isoform; protein-protein complexl, heat
repeat; HET: ADD; 3.30A {Homo sapiens} SCOP: a.118.1.20
Length = 449
Score = 28.3 bits (63), Expect = 2.3
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 22 KKLSREDINEDF---------SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHY 72
++++ I++ F SE+ RE + + TL IY K R +
Sbjct: 152 PNIAKKYIDQKFVLQLLELFDSEDPRERD-FLKTTLHRIYGKFLG----------LRAYI 200
Query: 73 IDYINSLFTHFISLAGDRLFGDDPAMQI 100
IN++F FI + G ++I
Sbjct: 201 RKQINNIFYRFIYE-TEHHNGIAELLEI 227
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 86
Score = 28.1 bits (63), Expect = 2.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 17 KIHELKKLSREDINEDFSEEIREL 40
K +EL+ S+E + + +EL
Sbjct: 4 KAYELRTKSKEQLASQLVDLKKEL 27
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU,
homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 28.2 bits (62), Expect = 2.8
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 9 EPISDLEAKIHELKKLSREDINEDFSEEIRE 39
E ++ A++ + ED ++ I+
Sbjct: 12 EEAAEQRAEVDRML---SED-PWRAAKMIKG 38
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 28.1 bits (61), Expect = 2.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 91 LFGDDPAMQIGLARFHGQPVAII 113
+ ++ + R+ G PVA +
Sbjct: 86 IAENEYPLARDKVRYRGDPVAAV 108
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet
sandwiched by helices, oxidoreductase; HET: CIT; 1.58A
{Homo sapiens}
Length = 346
Score = 27.7 bits (61), Expect = 3.7
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 9 EPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSK----LTPWQK 60
P++DL EL++ D+ I E +A VC+ L+++ + W++
Sbjct: 25 PPVTDLG----ELRR-RPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWER 75
>2nlk_A Protein tyrosine phosphatase, receptor type, G variant
(fragment); PTPRG, R-PTP gamma, protein tyrosine
phosphatase gamma, D3S1249, HPTPG, RPTPG; 2.40A {Homo
sapiens}
Length = 627
Score = 27.8 bits (61), Expect = 3.8
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 10 PISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEI----------YSKLTPWQ 59
P+ I EL ++ +EDF EE++ A + T Y + +
Sbjct: 4 PVKQFVKHIGELYSNNQHGFSEDF-EEVQRCTADMNITAEHSNHPENKHKNRYINILAYD 62
Query: 60 KTQV---SRHPNRPHYIDYIN 77
++V + DYIN
Sbjct: 63 HSRVKLRPLPGKDSKHSDYIN 83
>2inp_C Phenol hydroxylase component PHL; DIIRON, four-helix bundle,
regulatory protein, oxidoreductase; 2.30A {Pseudomonas
stutzeri} PDB: 2inn_C
Length = 328
Score = 27.5 bits (61), Expect = 3.9
Identities = 18/96 (18%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 90 RLFGDDPAM--QIG------LARFHGQPVAIIGQEKGSDTKSRIKHN----FGSPRPEGY 137
R FGD PA Q FH +P T++ I+ PR Y
Sbjct: 19 RRFGDKPATRYQEASYDIEAKTNFHYRPQWDSEHTLNDPTRTAIRMEDWCAVSDPRQFYY 78
Query: 138 RKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARG 173
V F + + E +
Sbjct: 79 GAYVGNRAKMQESAETSFGFCEKRNLLTRLSEETQK 114
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 27.5 bits (60), Expect = 4.1
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 132 PRPEGYRKAVRLMEMADRFKIPVISFI-------DTAGAYPGVDAEARGQGEAIARATEM 184
P + R+++ + I + A R Q + + + E
Sbjct: 231 PEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEE- 289
Query: 185 CLKLQVPILSI 195
+ ++ +
Sbjct: 290 LYDEEFNVVKM 300
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform; PP2A, acetylation, alternative splicing,
nucleus, phosphoprotein, cytoplasm, hydrolase, iron,
manganese, metal-binding; HET: 0D5; 2.70A {Homo sapiens}
PDB: 2iae_B* 2nym_B* 2nyl_B*
Length = 403
Score = 27.5 bits (61), Expect = 4.2
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFG 93
SE+ RE + + TL IY K R + IN++F FI + G
Sbjct: 140 SEDPRERD-FLKTTLHRIYGKFLG----------LRAYIRKQINNIFYRFIYE-TEHHNG 187
Query: 94 DDPAMQI 100
++I
Sbjct: 188 IAELLEI 194
>2j01_2 50S ribosomal protein L29; ribosome, tRNA, paromomycin, mRNA,
translation; 2.8A {Thermus thermophilus} SCOP: a.2.2.1
PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2
2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 3d5b_2 3d5d_2
3f1f_2 3f1h_2 3hux_2 3huz_2 2hgu_1 ...
Length = 72
Score = 27.3 bits (61), Expect = 4.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 11 ISDLEAKIHELKKLSREDINEDFSEEIREL 40
+S++ ++ E +KLS ++ + E+ REL
Sbjct: 3 LSEVRKQLEEARKLSPVELEKLVREKKREL 32
>1dkx_A Substrate binding domain of DNAK; DNAK, heat shock protein 70 kDa
(HSP70), complex (molecular chaperone/peptide); 2.00A
{Escherichia coli} SCOP: a.8.4.1 b.130.1.1 PDB: 3dpo_A*
3dpp_A* 3dpq_A* 1dkz_A 1dky_A 1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 27.3 bits (60), Expect = 4.9
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 4 YLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSK 54
+ + +E+ + L+ + + +++EL V + L EI +
Sbjct: 167 DKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQ-VSQKLMEIAQQ 216
>3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA
recombination, DNA repair, IM system; 1.95A {Escherichia
coli}
Length = 305
Score = 27.1 bits (60), Expect = 5.0
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60
+ LD + + + + E++R +E + + +K
Sbjct: 103 AKLALDEDLRLK--VVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTW 160
Query: 61 TQVSRHPNRPHYIDYINSLFTHFISL 86
P D IN + S
Sbjct: 161 NGRRYDPKDWEKGDTINQCISAATSC 186
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural genomics, oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 27.1 bits (59), Expect = 5.0
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 155 ISFIDTAGAYP-GVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213
I+ ID A YP E +G E + ++ G S +
Sbjct: 44 INLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQ 103
Query: 214 VYMLEHAIYSV 224
++ ++
Sbjct: 104 ALDRKNIREAL 114
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 27.3 bits (59), Expect = 5.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 94 DDPAMQIGLARFHGQPVAII 113
P + G+ RF G+ VA++
Sbjct: 100 IQPLLANGVTRFVGEIVAVV 119
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Pyrococcus furiosus}
Length = 111
Score = 27.0 bits (60), Expect = 5.2
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 6 DFEEPISDLEAKIHELKKLSRED-----INEDFSEEIRELEAMVCKTLSEIYSKLTP 57
+ E + K+ EL L R+D I E ++ I L + + +I K
Sbjct: 28 ESLESVERARNKLREL--LERDDVGIILITERLAQRIGSLPEVKFPIILQIPDKFGS 82
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 27.0 bits (59), Expect = 5.5
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240
E+ ++ I + + G G G G+ + + P + + +
Sbjct: 159 GPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGK 218
Query: 241 AAQAAIAMKIIATDLQDLSIIDGII 265
A I + + D S+ID +I
Sbjct: 219 HAIQGIGAGFV-PKILDRSVIDEVI 242
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 26.5 bits (58), Expect = 7.1
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 16 AKIHELKKLSRE--DINEDFSEEIRELEAMVCKTLSEIYSK 54
K+ LK L E ++ ++F E+ ELE + I+ +
Sbjct: 94 EKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQ 134
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 26.7 bits (58), Expect = 7.7
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 132 PRPEGYRKAVRLMEMADRFKIPVISFI------DTAGAYPGVDAEARGQGEAIARATEM 184
+ R+++ ++I + + D P A + Q + +A+ E+
Sbjct: 230 SEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEEL 288
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 26.5 bits (58), Expect = 8.0
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 94 DDPAMQIGLARFHGQPVAII 113
+ P + +G +AI+
Sbjct: 266 ERPILNDSKIFQYGDALAIV 285
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 26.4 bits (58), Expect = 8.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 8 EEPISDLEAKIHELKKL--SREDINEDFSEEIRELEA 42
E ++L I EL+ + E + + +E+ E+
Sbjct: 643 EAEYNELLNYISELETILADEEVLLQLVRDELTEIRD 679
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 26.5 bits (58), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 155 ISFIDTAGAYPGVDAEARGQGEAIAR 180
I+ IDTA Y +E G A+A
Sbjct: 66 INLIDTAPVYGFGHSEEIV-GRALAE 90
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 26.1 bits (57), Expect = 9.5
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 8 EEPISDLEAKIHELKKL--SREDINEDFSEEIRELE 41
E +LEA I +L+ + + + + EE+ E++
Sbjct: 460 EGEHKELEALIKQLRHILDNHDALLNVIKEELNEIK 495
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,785,304
Number of extensions: 133959
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 82
Length of query: 317
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 225
Effective length of database: 3,462,782
Effective search space: 779125950
Effective search space used: 779125950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)