Query gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 239 No_of_seqs 189 out of 410 Neff 4.2 Searched_HMMs 33803 Date Wed Jun 1 17:14:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780589.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1y7m_A Hypothetical protein B 99.3 6.9E-12 2.1E-16 93.3 8.6 94 50-168 4-105 (114) 2 >1zat_A L,D-transpeptidase; L, 99.3 6.2E-12 1.8E-16 93.6 6.1 107 48-168 123-242 (250) 3 >2wgp_A Dual specificity prote 45.7 8.2 0.00024 18.9 1.1 12 199-210 1-12 (43) 4 >3euh_C MUKE, chromosome parti 44.1 7.4 0.00022 19.1 0.6 13 98-110 66-78 (84) 5 >1d8j_A General transcription 38.8 15 0.00045 17.2 1.6 22 216-237 57-78 (81) 6 >3l44_A Glutamate-1-semialdehy 29.3 38 0.0011 14.7 2.7 61 113-173 99-173 (178) 7 >3c9h_A ABC transporter, subst 25.7 14 0.00041 17.4 -0.4 23 1-23 1-25 (355) 8 >2khf_A PLNJ; anti-microbial, 24.9 28 0.00084 15.5 1.1 19 200-218 2-20 (26) 9 >1p99_A Hypothetical protein P 23.1 20 0.0006 16.4 0.0 20 3-22 9-28 (183) 10 >2vbi_A Pyruvate decarboxylase 22.7 51 0.0015 14.0 2.1 49 145-193 145-193 (218) 11 >3k28_A Glutamate-1-semialdehy 21.6 53 0.0016 13.8 2.9 108 50-173 35-172 (175) No 1 >>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine proteases, cell WALL catabolism, structural genomics, PSI; 2.05A {Bacillus subtilis subsp} (A:51-164) Probab=99.32 E-value=6.9e-12 Score=93.30 Aligned_cols=94 Identities=28% Similarity=0.303 Sum_probs=74.9 Q ss_pred CCEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCH Q ss_conf 84799998378699998607889668999865213238988701017874750799984012587576521420799898 Q gi|254780589|r 50 HPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFLSINIGFPNE 129 (239) Q Consensus 50 ~pi~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG~Y~i~~~~~np~S~y~ls~~i~YPN~ 129 (239) .+..|.|.+.++.|.+|..+ +++++|+|+.|. +|..||+|.|.|..+.-++.+ .......|. T Consensus 4 ~~~~I~Vd~~~~~l~~~~~g-----~~~~~~~vs~G~---------~~~~TP~G~~~v~~k~~~~~~--~~~~~~~~~-- 65 (114) T 1y7m_A 4 IPYHIAVSIGAKTLTLSLNN-----RVXKTYPIAVGK---------ILTQTPTGEFYIINRQRNPGG--PFGAYWLSL-- 65 (114) T ss_dssp CCEEEEEETTTTEEEEEETT-----EEEEEEECBEEB---------TTBCCCCEEEEEEEEEECCCG--GGTTEEEEE-- T ss_pred CCCCCCCCHHHCEEEECCCC-----CEEEEECCCCCC---------CCCCCCCCEEEEECCCCCCCC--CCCCEEECC-- T ss_conf 33200133122101110577-----279982355566---------899799850784212345567--764325316-- Q ss_pred HHHHCCCCCCCEEECCCC--------CCCCCEEECHHHHHHHHHHHH Q ss_conf 899729998826871677--------866718706466999999999 Q gi|254780589|r 130 FDKAHNRTGADLMIHGEC--------ASAGCYAMNNKQMQEIYAIVR 168 (239) Q Consensus 130 ~Dr~~grtG~~I~IHG~~--------~S~GC~amtd~~i~EIy~~v~ 168 (239) .++++.|||.. +|+|||.|.++++++||.++. T Consensus 66 -------~~~g~~ihg~~~~~~~g~~~ShGCIrl~~~da~~ly~~~~ 105 (114) T 1y7m_A 66 -------SAAHYGIHGTNNPASIGKAVSKGCIRXHNKDVIELASIVP 105 (114) T ss_dssp -------SSTTCEEECCSCGGGTTSEEESSCEECCHHHHHHHHHHCC T ss_pred -------CCCCEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC T ss_conf -------7643776440564446997888871729999999996099 No 2 >>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, transferase; 2.40A {Enterococcus faecium} (A:) Probab=99.27 E-value=6.2e-12 Score=93.60 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=87.8 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCC Q ss_conf 57847999983786999986078896689998652132389887010178747507999840125875765214207998 Q gi|254780589|r 48 PFHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFLSINIGFP 127 (239) Q Consensus 48 ~~~pi~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG~Y~i~~~~~np~S~y~ls~~i~YP 127 (239) ...+.+|.|.+.+++|.+|..+ +++++|+|+.|+ +|..||.|.|.|..+..||......+....|. T Consensus 123 ~~~~~~I~Vd~~~~~l~~~~~g-----~~v~~~~v~~G~---------~~~~Tp~G~~~i~~k~~~~~~~~~~~~~~~~~ 188 (250) T 1zat_A 123 LIEDTYIEVDLENQHMWYYKDG-----KVALETDIVSGK---------PTTPTPAGVFYVWNKEEDATLKGTNDDGTPYE 188 (250) T ss_dssp SSCSCEEEEETTTTEEEEEETT-----EEEEEEECBCBC---------TTSCCCCEEEECCCCEEEEECCBCC--CCCBC T ss_pred CCCCCEEEEECCCCEEEEEECC-----EEEEEEEEECCC---------CCCCCCCEEEEEEEEECCCEEECCCCCCCCCC T ss_conf 8788399999736999999999-----999999887178---------97989956999999855977841588888867 Q ss_pred CHHHHHCCCCCCCEEECCC-------------CCCCCCEEECHHHHHHHHHHHH Q ss_conf 9889972999882687167-------------7866718706466999999999 Q gi|254780589|r 128 NEFDKAHNRTGADLMIHGE-------------CASAGCYAMNNKQMQEIYAIVR 168 (239) Q Consensus 128 N~~Dr~~grtG~~I~IHG~-------------~~S~GC~amtd~~i~EIy~~v~ 168 (239) ...+......+++++|||. +.|+|||.|.|+++.+||.++. T Consensus 189 ~~~~~~~~~~~~g~~~h~~~~~~~~~~~~~G~~~ShGCIrl~~~da~~l~~~~~ 242 (250) T 1zat_A 189 SPVNYWMPIDWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVE 242 (250) T ss_dssp CEEEEEEECSSSSCEEEECTTCSCCSTTHHHHHCBSSSEEECHHHHHHHHHHCC T ss_pred CCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCC T ss_conf 654368862798799978997533242458997888685879899999995189 No 3 >>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens} (A:148-190) Probab=45.75 E-value=8.2 Score=18.87 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=9.6 Q ss_pred CCCHHHHHHHHH Q ss_conf 867378985356 Q gi|254780589|r 199 NPNYSFWNMLKL 210 (239) Q Consensus 199 ~~~~~FW~~Lk~ 210 (239) .||..||+||-+ T Consensus 1 RPN~GFw~QLi~ 12 (43) T 2wgp_A 1 RPNVGFWRQLID 12 (43) T ss_dssp CCCHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 999889999999 No 4 >>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (C:1-84) Probab=44.11 E-value=7.4 Score=19.14 Aligned_cols=13 Identities=46% Similarity=0.922 Sum_probs=10.0 Q ss_pred CCCCCEEEEEEEC Q ss_conf 7475079998401 Q gi|254780589|r 98 EQAPEGFYYIGWN 110 (239) Q Consensus 98 ~kTPEG~Y~i~~~ 110 (239) .++|||||++-++ T Consensus 66 i~aPEgffYLrPr 78 (84) T 3euh_C 66 IRAPEGFFYLRPR 78 (84) T ss_dssp EECTTSCEEEEEC T ss_pred EECCCCEEEECCC T ss_conf 9768742786465 No 5 >>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} (A:) Probab=38.79 E-value=15 Score=17.21 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.2 Q ss_pred HHHCCCCEEEEECCEEEECCCC Q ss_conf 9858973279727668944888 Q gi|254780589|r 216 EKNHQEPFIQIINKQYVFFKGQ 237 (239) Q Consensus 216 e~~~~~p~v~v~~~~Yvf~~~~ 237 (239) |.-..-|.+.|++|+|+|.+.= T Consensus 57 EAL~nNPKi~~~dgKf~FkP~Y 78 (81) T 1d8j_A 57 EALVNNPKIEVIDGKYAFKPKY 78 (81) T ss_dssp THHHHCTTEEECSSSEEECCTT T ss_pred HHCCCCCCEEEECCEEEECCCC T ss_conf 0303698505516826405776 No 6 >>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, csgid, cytoplasm, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} (A:1-66,A:323-434) Probab=29.26 E-value=38 Score=14.72 Aligned_cols=61 Identities=7% Similarity=0.043 Sum_probs=43.0 Q ss_pred CCCCCCCEEEECCCCCHHHHHCCC------------CCCCEEECCCCCCCC--CEEECHHHHHHHHHHHHHHHHH Q ss_conf 875765214207998988997299------------988268716778667--1870646699999999999975 Q gi|254780589|r 113 NPNSKYFLSINIGFPNEFDKAHNR------------TGADLMIHGECASAG--CYAMNNKQMQEIYAIVRDSLRG 173 (239) Q Consensus 113 np~S~y~ls~~i~YPN~~Dr~~gr------------tG~~I~IHG~~~S~G--C~amtd~~i~EIy~~v~~a~~~ 173 (239) ...|-+.+.|.-.=|..++.+... --.+|+++....-.+ |.|.|+++|+++-.-++++|+. T Consensus 99 g~Gs~f~i~F~~~~~~~~~d~~~~~~~~~~~~~~~ll~~GI~~~p~~~~~~flS~AHt~edId~~l~a~~~~l~~ 173 (178) T 3l44_A 99 RLKGALTVYFTTNTIEDYDAAQDTDGEXFGKFFKLXLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVGRAFAA 173 (178) T ss_dssp EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred ECCCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCCCEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 248778999805776787876136599999999999979939826898425588888299999999999999999 No 7 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=25.68 E-value=14 Score=17.43 Aligned_cols=23 Identities=13% Similarity=-0.106 Sum_probs=14.9 Q ss_pred CCCHHHHHHHHHHH--HHCCCCCCC Q ss_conf 94046899999999--860466533 Q gi|254780589|r 1 MTNRYNILLFALFI--FLNGCHHSR 23 (239) Q Consensus 1 M~~R~~~Llfal~i--~L~gc~~~~ 23 (239) |++|..+++.++++ .|+||.... T Consensus 1 Mkk~~~~~~~~~~~~~~la~c~~~~ 25 (355) T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFP 25 (355) T ss_dssp ---------------CEEEEEEEEC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9369999999999999999987433 No 8 >>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A (A:) Probab=24.91 E-value=28 Score=15.52 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=14.3 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 6737898535688899985 Q gi|254780589|r 200 PNYSFWNMLKLGHDYFEKN 218 (239) Q Consensus 200 ~~~~FW~~Lk~gyd~Fe~~ 218 (239) .|..||..|..|+-.=|.- T Consensus 2 awknfwsslrkgfydgeag 20 (26) T 2khf_A 2 AWKNFWSSLRKGFYDGEAG 20 (26) T ss_dssp CHHHHHHHHHHHHTTTHHH T ss_pred CHHHHHHHHHHHCCCCHHH T ss_conf 0787999998651354112 No 9 >>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295) Probab=23.11 E-value=20 Score=16.45 Aligned_cols=20 Identities=5% Similarity=-0.288 Sum_probs=9.6 Q ss_pred CHHHHHHHHHHHHHCCCCCC Q ss_conf 04689999999986046653 Q gi|254780589|r 3 NRYNILLFALFIFLNGCHHS 22 (239) Q Consensus 3 ~R~~~Llfal~i~L~gc~~~ 22 (239) ++.+.+++++++.|++|+.+ T Consensus 9 k~~~~~~~~~~l~l~~~g~~ 28 (183) T 1p99_A 9 DYDIPTTENLYFQGAHMGIQ 28 (183) T ss_dssp -------------------- T ss_pred CCCCCCHHHHHHHHHHCCCC T ss_conf 56773178899999851478 No 10 >>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} (A:349-566) Probab=22.71 E-value=51 Score=13.97 Aligned_cols=49 Identities=14% Similarity=-0.039 Sum_probs=39.6 Q ss_pred CCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH Q ss_conf 6778667187064669999999999997508561116995556898898 Q gi|254780589|r 145 GECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNM 193 (239) Q Consensus 145 G~~~S~GC~amtd~~i~EIy~~v~~a~~~~gQ~~~~v~~~Pfrmt~~n~ 193 (239) +-..+.|+-..+=...+|+-...++|+.++|-.-|.|.+.|........ T Consensus 145 ~~a~a~g~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~~~~~~ 193 (218) T 2vbi_A 145 NAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDRTDCTDMLV 193 (218) T ss_dssp HTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHH T ss_pred CCCHHCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCHHHH T ss_conf 8603240359973699999999999875997499999987132684335 No 11 >>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* (A:1-65,A:320-429) Probab=21.62 E-value=53 Score=13.84 Aligned_cols=108 Identities=10% Similarity=0.097 Sum_probs=62.0 Q ss_pred CCEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCC----------CCCHHCCC------CCCCCCEEEEEEECCCC Q ss_conf 847999983786999986078896689998652132389----------88701017------87475079998401258 Q gi|254780589|r 50 HPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGT----------FGPKIETG------DEQAPEGFYYIGWNNLN 113 (239) Q Consensus 50 ~pi~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~----------lGpK~~eG------D~kTPEG~Y~i~~~~~n 113 (239) .|++|. +-.--.||--+ +.+|- . .+.+.|+ +|...++| +...|--+..+ T Consensus 35 ~p~~~~---~a~G~~~~D~d-G~~yi---D--~~~~~g~~p~vye~L~~~g~~L~~gl~~~~~~~g~~~~v~g~------ 99 (175) T 3k28_A 35 NPLFXE---RGKGSKVYDID-GNEYI---D--YVLSWGPLPESYVEFERKAEXLEAGLRKAAEKHGIPHHINRA------ 99 (175) T ss_dssp CCCCEE---EEEBTEEEETT-CCEEE---E--SCGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE------ T ss_pred CCCEEE---EEECCEEEECC-CCEEE---E--ECCCHHHCHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE------ T ss_conf 997799---70439899795-79999---8--440787503426889999999999999999758997699624------ Q ss_pred CCCCCCEEEECCCCCHHHHH-CCC-----------CCCCEEECCCCCC--CCCEEECHHHHHHHHHHHHHHHHH Q ss_conf 75765214207998988997-299-----------9882687167786--671870646699999999999975 Q gi|254780589|r 114 PNSKYFLSINIGFPNEFDKA-HNR-----------TGADLMIHGECAS--AGCYAMNNKQMQEIYAIVRDSLRG 173 (239) Q Consensus 114 p~S~y~ls~~i~YPN~~Dr~-~gr-----------tG~~I~IHG~~~S--~GC~amtd~~i~EIy~~v~~a~~~ 173 (239) .|-|.+.|.-.=|..++-+ .+. --.+|++.....- .=|.|.|+++|+++-....++|+. T Consensus 100 -gs~f~i~F~~~~~~~~~d~~~~d~~~~~~~~~~ll~~GV~~~p~~~~~~~lS~aHT~edId~~l~a~~~~l~~ 172 (175) T 3k28_A 100 -GSXIGIFFTDEPVINYDAAKSSNLQFFAAYYREXVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAXSK 172 (175) T ss_dssp -TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCCTTCCHHHHHHHHHHHHHHHHT T ss_pred -CCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf -6289999836877786776025499999999999979989778887107667778799999999999999998 Done!