RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62] (239 letters) >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas smithii subsp} (A:1-137,A:246-313) Length = 205 Score = 32.8 bits (74), Expect = 0.047 Identities = 11/74 (14%), Positives = 19/74 (25%) Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200 +M+HG M Y IV RG+ +S + + Sbjct: 38 VMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRT 97 Query: 201 NYSFWNMLKLGHDY 214 + G + Sbjct: 98 HLGVDRWQVFGGSW 111 >1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, transferase; 2.40A {Enterococcus faecium} (A:) Length = 250 Score = 32.2 bits (72), Expect = 0.069 Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 27/131 (20%) Query: 51 PTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWN 110 T I + + +K + E I P G +Y+ Sbjct: 126 DTYIEVDLENQHMWYYKDGK-----VALETDIV---------SGKPTTPTPAGVFYVWNK 171 Query: 111 NLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIH-------------GECASAGCYAMNN 157 + K + + + + IH S GC Sbjct: 172 EEDATLKGTNDDGTPYESPVNYWMPIDWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPP 231 Query: 158 KQMQEIYAIVR 168 M+E++ +V Sbjct: 232 SVMKELFGMVE 242 >1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine proteases, cell WALL catabolism, structural genomics, PSI; 2.05A {Bacillus subtilis subsp} (A:51-164) Length = 114 Score = 29.9 bits (67), Expect = 0.32 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 17/119 (14%) Query: 51 PTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWN 110 P I + L + N + K Y I + Q P G +YI Sbjct: 5 PYHIAVSIGAKTLTLSLNNR-----VXKTYPIA---------VGKILTQTPTGEFYIINR 50 Query: 111 NLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRD 169 N + + T I G+ S GC +NK + E+ +IV + Sbjct: 51 Q--RNPGGPFGAYWLSLSAAHYGIHGTNNPASI-GKAVSKGCIRXHNKDVIELASIVPN 106 >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* (A:1-130,A:200-276) Length = 207 Score = 27.3 bits (60), Expect = 1.9 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200 L++ G C Y +++ + ++ + RG+ S + F + + Sbjct: 31 LLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSP--SEVPDFGYQEQVKDALEILD 88 Query: 201 NYSFWNMLKLGHDY 214 L + H + Sbjct: 89 QLGVETFLPVSHSH 102 >3fwh_A Haloalkane dehalogenase; alpha/beta hydrolase core, helical CAP domain, catalytic triad (Asp106, His272, Glu130), mutant, I135F, C176Y; 1.22A {Rhodococcus SP} PDB: 3fbw_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A (A:1-137,A:213-299) Length = 224 Score = 26.7 bits (58), Expect = 2.8 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 2/74 (2%) Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200 L +HG S+ + + + + L G +S + F + + + Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95 Query: 201 NYSFWNMLKLGHDY 214 + + HD+ Sbjct: 96 GLEEVVL--VIHDW 107 >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* (A:) Length = 244 Score = 26.4 bits (56), Expect = 3.4 Identities = 3/40 (7%), Positives = 6/40 (15%) Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ 180 + Q+ A+ Q Sbjct: 26 FCFPPISGFGIYFKDLALQLNHKAAVYGFHFIEEDSRIEQ 65 >1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} (A:) Length = 35 Score = 26.4 bits (59), Expect = 4.0 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%) Query: 7 ILLFALFI-FLNGCHHSR 23 IL LFI F GC HSR Sbjct: 15 ILQQLLFIHFRIGCRHSR 32 >3fla_A RIFR; alpha-beta hydrolase thioesterase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* (A:) Length = 267 Score = 25.9 bits (55), Expect = 5.1 Identities = 4/38 (10%), Positives = 10/38 (26%) Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSH 178 + + SA + K + ++ G Sbjct: 24 VCLPHAGGSASFFFPLAKALAPAVEVLAVQYPGRQDRR 61 >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} (A:1-123,A:205-264) Length = 183 Score = 25.8 bits (56), Expect = 5.4 Identities = 5/74 (6%), Positives = 23/74 (31%), Gaps = 2/74 (2%) Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200 ++ G C + + + ++ RG+ F + ++++ + + Sbjct: 25 FLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAKQTDSGDFDSQTLAQDLLAFID-- 82 Query: 201 NYSFWNMLKLGHDY 214 + + + Sbjct: 83 AKGIRDFQXVSTSH 96 >1y4w_A EXO-inulinase; glycoside hydrolase family 32, crystallographic structure, native structure; HET: NAG; 1.55A {Aspergillus awamori} (A:24-157) Length = 134 Score = 25.7 bits (56), Expect = 5.4 Identities = 6/17 (35%), Positives = 8/17 (47%) Query: 196 YQNNPNYSFWNMLKLGH 212 +Q NP W + GH Sbjct: 14 FQYNPGGIEWGNISWGH 30 >2i9i_A Hypothetical protein; PSI-2 structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.80A {Helicobacter pylori} (A:) Length = 254 Score = 25.6 bits (56), Expect = 6.1 Identities = 10/38 (26%), Positives = 21/38 (55%) Query: 194 QLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQY 231 Y++N + + + H+Y EKN ++ +I+N+ Y Sbjct: 172 YTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMY 209 >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} (A:1-264) Length = 264 Score = 25.5 bits (55), Expect = 6.5 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 8/83 (9%) Query: 157 NKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFE 216 + Q + RD Q++ I PF MT++ + N+P + + + Sbjct: 173 VRNGQTVETWNRDGGTSTEQAYKNI---PFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQ 229 Query: 217 KNHQEPFIQIINKQYVFFKGQTI 239 + + ++ +Y G T Sbjct: 230 FSVESEYL-----EYFVIDGPTP 247 >2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, invertase; 1.90A {Bacillus SP} (A:534-592,A:797-956) Length = 219 Score = 25.3 bits (55), Expect = 8.9 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 148 ASAGCYAMNNKQMQEIYAIVRDSLRGNMQS 177 A G + ++ + + I R + R M+ Sbjct: 1 AEQGSFRCSDALLNATWEISRHTTRLCMED 30 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.138 0.431 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,870,500 Number of extensions: 82814 Number of successful extensions: 242 Number of sequences better than 10.0: 1 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 19 Length of query: 239 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 153 Effective length of database: 2,048,819 Effective search space: 313469307 Effective search space used: 313469307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.5 bits)