RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780589|ref|YP_003065002.1| hypothetical protein
CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62]
(239 letters)
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas smithii
subsp} (A:1-137,A:246-313)
Length = 205
Score = 32.8 bits (74), Expect = 0.047
Identities = 11/74 (14%), Positives = 19/74 (25%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200
+M+HG M Y IV RG+ +S + +
Sbjct: 38 VMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRT 97
Query: 201 NYSFWNMLKLGHDY 214
+ G +
Sbjct: 98 HLGVDRWQVFGGSW 111
>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan,
beta-lactam insensitive transpeptidase, antibiotic
resistance, transferase; 2.40A {Enterococcus faecium}
(A:)
Length = 250
Score = 32.2 bits (72), Expect = 0.069
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 27/131 (20%)
Query: 51 PTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWN 110
T I + + +K + E I P G +Y+
Sbjct: 126 DTYIEVDLENQHMWYYKDGK-----VALETDIV---------SGKPTTPTPAGVFYVWNK 171
Query: 111 NLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIH-------------GECASAGCYAMNN 157
+ K + + + + IH S GC
Sbjct: 172 EEDATLKGTNDDGTPYESPVNYWMPIDWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPP 231
Query: 158 KQMQEIYAIVR 168
M+E++ +V
Sbjct: 232 SVMKELFGMVE 242
>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine
proteases, cell WALL catabolism, structural genomics,
PSI; 2.05A {Bacillus subtilis subsp} (A:51-164)
Length = 114
Score = 29.9 bits (67), Expect = 0.32
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 17/119 (14%)
Query: 51 PTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWN 110
P I + L + N + K Y I + Q P G +YI
Sbjct: 5 PYHIAVSIGAKTLTLSLNNR-----VXKTYPIA---------VGKILTQTPTGEFYIINR 50
Query: 111 NLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRD 169
N + + T I G+ S GC +NK + E+ +IV +
Sbjct: 51 Q--RNPGGPFGAYWLSLSAAHYGIHGTNNPASI-GKAVSKGCIRXHNKDVIELASIVPN 106
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase;
oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT;
2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A*
2wj3_A* 2wm2_A* (A:1-130,A:200-276)
Length = 207
Score = 27.3 bits (60), Expect = 1.9
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200
L++ G C Y +++ + ++ + RG+ S + F + +
Sbjct: 31 LLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSP--SEVPDFGYQEQVKDALEILD 88
Query: 201 NYSFWNMLKLGHDY 214
L + H +
Sbjct: 89 QLGVETFLPVSHSH 102
>3fwh_A Haloalkane dehalogenase; alpha/beta hydrolase core, helical
CAP domain, catalytic triad (Asp106, His272, Glu130),
mutant, I135F, C176Y; 1.22A {Rhodococcus SP} PDB: 3fbw_A
1bn6_A 1bn7_A 1cqw_A 2v9z_A (A:1-137,A:213-299)
Length = 224
Score = 26.7 bits (58), Expect = 2.8
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200
L +HG S+ + + + + L G +S + F + + +
Sbjct: 36 LFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEAL 95
Query: 201 NYSFWNMLKLGHDY 214
+ + HD+
Sbjct: 96 GLEEVVL--VIHDW 107
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha/beta- hydrolases, catalytic triade,
hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* (A:)
Length = 244
Score = 26.4 bits (56), Expect = 3.4
Identities = 3/40 (7%), Positives = 6/40 (15%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ 180
+ Q+ A+ Q
Sbjct: 26 FCFPPISGFGIYFKDLALQLNHKAAVYGFHFIEEDSRIEQ 65
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment,
helix; NMR {Synthetic} (A:)
Length = 35
Score = 26.4 bits (59), Expect = 4.0
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 7 ILLFALFI-FLNGCHHSR 23
IL LFI F GC HSR
Sbjct: 15 ILQQLLFIHFRIGCRHSR 32
>3fla_A RIFR; alpha-beta hydrolase thioesterase; HET: MSE; 1.80A
{Amycolatopsis mediterranei} PDB: 3flb_A* (A:)
Length = 267
Score = 25.9 bits (55), Expect = 5.1
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSH 178
+ + SA + K + ++ G
Sbjct: 24 VCLPHAGGSASFFFPLAKALAPAVEVLAVQYPGRQDRR 61
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO,
oxidoreductase; 2.60A {Pseudomonas putida}
(A:1-123,A:205-264)
Length = 183
Score = 25.8 bits (56), Expect = 5.4
Identities = 5/74 (6%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200
++ G C + + + ++ RG+ F + ++++ + +
Sbjct: 25 FLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAKQTDSGDFDSQTLAQDLLAFID-- 82
Query: 201 NYSFWNMLKLGHDY 214
+ + +
Sbjct: 83 AKGIRDFQXVSTSH 96
>1y4w_A EXO-inulinase; glycoside hydrolase family 32,
crystallographic structure, native structure; HET: NAG;
1.55A {Aspergillus awamori} (A:24-157)
Length = 134
Score = 25.7 bits (56), Expect = 5.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 196 YQNNPNYSFWNMLKLGH 212
+Q NP W + GH
Sbjct: 14 FQYNPGGIEWGNISWGH 30
>2i9i_A Hypothetical protein; PSI-2 structural genomics, protein
structure initiative, NEW YORK SGX research center for
structural genomics, nysgxrc; 1.80A {Helicobacter
pylori} (A:)
Length = 254
Score = 25.6 bits (56), Expect = 6.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 194 QLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQY 231
Y++N + + + H+Y EKN ++ +I+N+ Y
Sbjct: 172 YTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMY 209
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel,
hydrolase; HET: MPO XTG; 1.95A {Escherichia coli}
(A:1-264)
Length = 264
Score = 25.5 bits (55), Expect = 6.5
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 157 NKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFE 216
+ Q + RD Q++ I PF MT++ + N+P + + +
Sbjct: 173 VRNGQTVETWNRDGGTSTEQAYKNI---PFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQ 229
Query: 217 KNHQEPFIQIINKQYVFFKGQTI 239
+ + ++ +Y G T
Sbjct: 230 FSVESEYL-----EYFVIDGPTP 247
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78,
invertase; 1.90A {Bacillus SP} (A:534-592,A:797-956)
Length = 219
Score = 25.3 bits (55), Expect = 8.9
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 148 ASAGCYAMNNKQMQEIYAIVRDSLRGNMQS 177
A G + ++ + + I R + R M+
Sbjct: 1 AEQGSFRCSDALLNATWEISRHTTRLCMED 30
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.138 0.431
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,870,500
Number of extensions: 82814
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 19
Length of query: 239
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 153
Effective length of database: 2,048,819
Effective search space: 313469307
Effective search space used: 313469307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)