BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780589|ref|YP_003065002.1| hypothetical protein
CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62]
         (239 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 239

 Score =  501 bits (1290), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MTNRYNILLFALFIFLNGCHHSRSLIDKAEHPLSENLIISMQKKRTSPFHPTVIRIFKNE 60
           MTNRYNILLFALFIFLNGCHHSRSLIDKAEHPLSENLIISMQKKRTSPFHPTVIRIFKNE
Sbjct: 1   MTNRYNILLFALFIFLNGCHHSRSLIDKAEHPLSENLIISMQKKRTSPFHPTVIRIFKNE 60

Query: 61  NILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFL 120
           NILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFL
Sbjct: 61  NILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFL 120

Query: 121 SINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ 180
           SINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ
Sbjct: 121 SINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ 180

Query: 181 IQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYVFFKGQTI 239
           IQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYVFFKGQTI
Sbjct: 181 IQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYVFFKGQTI 239


>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 424

 Score = 26.6 bits (57), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 49  FHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIG 108
           F   +I     ENI E  +   +  + L KE K   +S         GDE    GF    
Sbjct: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYS------TNVGDEG---GF---- 206

Query: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASA 150
               +PN K   S      N  +KA    G DL+I  +CA++
Sbjct: 207 ----SPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS 244


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 25.0 bits (53), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 30  EHPLSENLIISMQKKRTSPFHPTVIRI-------FKNENILEIWKRNVDAEYVLLKEYKI 82
           E P+ ++L+I + + R       V  I       +  +  +E+ K  +DAE + L+  + 
Sbjct: 318 EVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP 377

Query: 83  CAWSGTFGPKIETG 96
             W   F    +TG
Sbjct: 378 MDWQTIFESVKKTG 391


>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 332

 Score = 23.9 bits (50), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 18/55 (32%)

Query: 101 PEGFYYIGWNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAM 155
           PE F+ + W NL                 F  A+ R+G  ++IHG  +  G  A+
Sbjct: 127 PESFFTV-WANL-----------------FQTANLRSGQTVLIHGGSSGIGTTAI 163


>gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 118

 Score = 21.9 bits (45), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 20 HHSRSLIDKAEHPLSENLIISMQKK 44
          HH  + I++ E+P +EN+ I + K+
Sbjct: 68 HHCLNEIEELENPTAENIAIWIWKR 92


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,208
Number of Sequences: 1233
Number of extensions: 7065
Number of successful extensions: 19
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 239
length of database: 328,796
effective HSP length: 71
effective length of query: 168
effective length of database: 241,253
effective search space: 40530504
effective search space used: 40530504
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 37 (18.9 bits)