Query gi|254780590|ref|YP_003065003.1| hypothetical protein CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs 38 out of 40
Neff 3.4
Searched_HMMs 23785
Date Tue May 31 18:58:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780590.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a8r_A GTP cyclohydrolase I; p 46.3 12 0.0005 17.9 2.8 55 28-82 8-69 (221)
2 2o09_A ALR2278 protein; heme, 23.5 40 0.0017 14.7 3.7 23 56-78 63-85 (189)
3 1is8_A GTP cyclohydrolase I; e 21.0 17 0.00072 16.9 0.1 36 46-81 45-80 (230)
4 2khr_A Protein MBTH; sideropho 17.3 49 0.0021 14.2 1.7 15 22-36 47-61 (74)
5 1yb4_A Tartronic semialdehyde 16.2 58 0.0024 13.7 2.8 54 23-87 179-232 (295)
6 2uyy_A N-PAC protein; long-cha 14.1 66 0.0028 13.4 4.2 54 23-87 207-260 (316)
7 2gey_A ACLR protein; alpha+bet 13.0 71 0.003 13.2 1.8 60 17-85 1-64 (158)
8 1swy_A Lysozyme; RB+ binding s 12.3 74 0.0031 13.1 1.8 18 72-89 146-163 (164)
9 2dme_A PHD finger protein 3; P 12.0 73 0.0031 13.1 1.4 16 74-89 80-95 (120)
10 1wur_A GTP cyclohydrolase I; b 10.6 44 0.0018 14.5 -0.1 38 39-81 30-67 (220)
No 1
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A*
Probab=46.27 E-value=12 Score=17.88 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHH-HHHHHCCCCH------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999-9999728889------99999999999999999958389999999999999705
Q gi|254780590|r 28 EYQNEAW-AEGMAEGIEP------EIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLAG 82 (91)
Q Consensus 28 e~~~eAW-aEal~~GIep------e~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~G 82 (91)
+.+.++| +-|+..++.| +---...|..+++++.+.-|||...+=+.++|+||..-
T Consensus 8 ~~v~~~~~~~g~~tp~~~~~~~~~~e~~~~~i~~~v~~iL~~lGeD~~regL~~TP~Rvak~ 69 (221)
T 1a8r_A 8 ALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKM 69 (221)
T ss_dssp HHHHHHHHHTTCSCSCCCCSCCCCHHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHH
T ss_conf 99999998548656788852217989999999999999999967998875112478999999
No 2
>2o09_A ALR2278 protein; heme, CO, guanylyl cyclase, signaling protein; HET: HEM; 2.10A {Nostoc SP} PDB: 2o0c_A* 2o0g_A* 3l6j_A*
Probab=23.53 E-value=40 Score=14.72 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=14.2
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 99999995838999999999999
Q gi|254780590|r 56 IRETVRIHGEEKMESLLKSLMSR 78 (91)
Q Consensus 56 l~elv~~~GEe~~a~l~e~l~~R 78 (91)
..++.+.+|+.-+-.+.+....+
T Consensus 63 ~~~ll~~fG~~~~~~~~~~~y~~ 85 (189)
T 2o09_A 63 AEELLIAFGEYWVTYTSEEGYGE 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99999999999999887626899
No 3
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=21.01 E-value=17 Score=16.94 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999995838999999999999970
Q gi|254780590|r 46 IIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLA 81 (91)
Q Consensus 46 ~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~ 81 (91)
-.....+..|++++.+.-|||...+=+..+|+||..
T Consensus 45 ~~~~~~~e~Av~~iL~~lGeDp~regL~~TP~Rvak 80 (230)
T 1is8_A 45 ELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAAT 80 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSTTTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 027899999999999997799996100146999999
No 4
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2- hydroxyphenyloxazoline, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=17.26 E-value=49 Score=14.17 Aligned_cols=15 Identities=13% Similarity=0.665 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780590|r 22 KMQVAIEYQNEAWAE 36 (91)
Q Consensus 22 q~~~Ale~~~eAWaE 36 (91)
-|+.||.|+.+.|.+
T Consensus 47 sr~~Cl~yIe~~WtD 61 (74)
T 2khr_A 47 SRAACLDYVEKNWTD 61 (74)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999987256
No 5
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, PSI, protein structure initiative; 2.40A {Salmonella typhimurium LT2}
Probab=16.19 E-value=58 Score=13.74 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999999999997288899999999999999999995838999999999999970577887
Q gi|254780590|r 23 MQVAIEYQNEAWAEGMAEGIEPEIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLAGEFSPE 87 (91)
Q Consensus 23 ~~~Ale~~~eAWaEal~~GIepe~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~GeFt~~ 87 (91)
..+.+....|+++=+-..||+|+.+.+.-... . ....+.+..+.++.+|+|++.
T Consensus 179 ~~~~~~~~~Ea~~l~~k~Gid~~~~~~~l~~~--------~---~~s~~~~~~~~~~~~~~~~~~ 232 (295)
T 1yb4_A 179 VALNIEAVSEALVFASKAGADPVRVRQALMGG--------F---ASSRILEVHGERMINRTFEPG 232 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSS--------S---SCBHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC--------C---CCCHHHHCCCCEECCCCCCCC
T ss_conf 99999999999999998296999999999623--------5---334244305630003788975
No 6
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=14.08 E-value=66 Score=13.40 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999999999997288899999999999999999995838999999999999970577887
Q gi|254780590|r 23 MQVAIEYQNEAWAEGMAEGIEPEIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLAGEFSPE 87 (91)
Q Consensus 23 ~~~Ale~~~eAWaEal~~GIepe~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~GeFt~~ 87 (91)
...-+...+|+.+=+-..||+++.+.++.-..+.. .-+++....++..|.|++.
T Consensus 207 ~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~-----------s~~~~~~~~~~~~~~~~~~ 260 (316)
T 2uyy_A 207 QGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLA-----------SIFLDQKCQNILQGNFKPD 260 (316)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTC-----------CHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-----------CCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999998597999999999817755-----------7510255764557999998
No 7
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=13.00 E-value=71 Score=13.21 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 679999999999999999999----972888999999999999999999958389999999999999705778
Q gi|254780590|r 17 LLLHEKMQVAIEYQNEAWAEG----MAEGIEPEIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLAGEFS 85 (91)
Q Consensus 17 l~~~Eq~~~Ale~~~eAWaEa----l~~GIepe~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~GeFt 85 (91)
|+-.+.|+++..|+ +||..+ +.+=..||++-.. --...|-+...+++.++.+.+-.-.|+
T Consensus 1 Ms~~~~k~lv~~~~-~Awn~~D~~~l~~~~apD~v~~~--------~~~~~g~~~~~~~~~~~~~afpd~~~~ 64 (158)
T 2gey_A 1 MSMAERKALCLEMV-AAWNRWDLSGIIKHWSPDIVHYS--------EDNEVSSADMVKLMEGGLKAFPDLQLE 64 (158)
T ss_dssp -CHHHHHHHHHHHH-HHHHTTCTHHHHTTEEEEEEEEE--------TTEEECHHHHHHHHHHHHHHSTTCEEE
T ss_pred CCHHHHHHHHHHHH-HHHHCCCHHHHHHHCCCCEEEEC--------CCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98779999999999-99976899999987099989827--------997779999999999999869995998
No 8
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=12.33 E-value=74 Score=13.09 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHHHHHCCCCHHHH
Q ss_conf 999999997057788772
Q gi|254780590|r 72 LKSLMSRMLAGEFSPERV 89 (91)
Q Consensus 72 ~e~l~~Rv~~GeFt~~r~ 89 (91)
++++.+|+++|+|.+-|-
T Consensus 146 ~~~~~~~~r~g~~~~~~~ 163 (164)
T 1swy_A 146 AKRVITTFRTGTWDAYKN 163 (164)
T ss_dssp HHHHHHHHHHSSCTTTTT
T ss_pred HHHHHHHHHCCCHHHHCC
T ss_conf 999999997686475468
No 9
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.96 E-value=73 Score=13.11 Aligned_cols=16 Identities=31% Similarity=0.756 Sum_probs=13.2
Q ss_pred HHHHHHHHCCCCHHHH
Q ss_conf 9999997057788772
Q gi|254780590|r 74 SLMSRMLAGEFSPERV 89 (91)
Q Consensus 74 ~l~~Rv~~GeFt~~r~ 89 (91)
.|+.||.+|+++|...
T Consensus 80 ~L~~~il~g~i~p~~l 95 (120)
T 2dme_A 80 ILFKKVLKGEVTPDHL 95 (120)
T ss_dssp SHHHHHHHTSSCTTHH
T ss_pred HHHHHHHCCCCCHHHH
T ss_conf 9999998099689998
No 10
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=10.64 E-value=44 Score=14.45 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 7288899999999999999999995838999999999999970
Q gi|254780590|r 39 AEGIEPEIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLA 81 (91)
Q Consensus 39 ~~GIepe~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~ 81 (91)
...++-+. +-.|.+++.+.-|||.-.+=+..+|+||..
T Consensus 30 ~~~~d~~~-----ie~av~~iL~~lGeDp~regL~~TP~Rvak 67 (220)
T 1wur_A 30 ATEVDLER-----LQALAAEWLQVIGEDPGREGLLKTPERVAK 67 (220)
T ss_dssp --CCCHHH-----HHHHHHHHHHHTTCCTTSGGGTTHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 77336999-----999999999996799985332026999999
Done!