RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780590|ref|YP_003065003.1| hypothetical protein
CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>gnl|CDD|172503 PRK14002, PRK14002, potassium-transporting ATPase subunit C;
           Provisional.
          Length = 186

 Score = 30.8 bits (70), Expect = 0.069
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 39  AEGIEPEIIANAAITQAIR-ETVRIHGEEKMESLLKSLMSRMLAGEFSPERV 89
             G++P I   AA  Q  R    R   EEK++ L+   + + L G F  E+V
Sbjct: 122 GSGLDPNISPQAAYVQVKRVAKARGMSEEKVKQLVDQHVEKPLLGMFGTEKV 173


>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase.  Characterized members
           of this protein family are L-lysine 6-transaminase, also
           called lysine epsilon-aminotransferase (LAT). The
           immediate product of the reaction of this enzyme on
           lysine, 2-aminoadipate 6-semialdehyde, becomes
           1-piperideine 6-carboxylate, or P6C. This product may be
           converted subsequently to pipecolate or
           alpha-aminoadipate, lysine catabolites that may be
           precursors of certain seconary metabolites.
          Length = 431

 Score = 28.6 bits (64), Expect = 0.41
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   ESIRSVEKKTQEFDALLLHEKMQVAIEYQNEAWAEGMAEGIEPEIIANAAITQ 54
           E +R++     E DALL+ +++Q  +     AWA     G++P+I+A    TQ
Sbjct: 239 EFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAY-QQLGVQPDIVAFGKKTQ 290


>gnl|CDD|162005 TIGR00707, argD, acetylornithine and succinylornithine
           aminotransferases.  Members of this family may also act
           on ornithine, like ornithine aminotransferase (EC
           2.6.1.13) (see MEDLINE:90337349) and on
           succinyldiaminopimelate, like
           N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
           DapC, an enzyme of lysine biosynthesis) (see
           MEDLINE:99175097).
          Length = 379

 Score = 28.1 bits (63), Expect = 0.51
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 2   ESIRSVEKKTQEFDALLLHEKMQVAIEYQNEAWAEGMAEGIEPEIIANA 50
           E ++++ +  ++ DALL+ +++Q  I    + +A     GIEP+II  A
Sbjct: 191 EFLKALREICKDKDALLIFDEVQTGIGRTGKFFAY-EHYGIEPDIITLA 238


>gnl|CDD|179861 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 572

 Score = 27.6 bits (61), Expect = 0.67
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 9   KKTQEFDALLLHEKMQVAIEYQNEAWAEGMAEGIEPEIIANAAITQA-IRETVRIHGEEK 67
           ++T  F A L H  +++A E+ NE          E  ++    IT A +R+ +    +E+
Sbjct: 193 RQTLLFSATLSHRVLELAYEHMNEP---------EKLVVETETITAARVRQRIYFPADEE 243

Query: 68  MESLLKSLMSR 78
            ++LL  L+SR
Sbjct: 244 KQTLLLGLLSR 254


>gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator.  Members
           of this family contain a response regulator receiver
           domain (Pfam:PF00072) and an associated transcriptional
           regulatory region (Pfam:PF00486). This group is
           separated phylogenetically from related proteins with
           similar architecture and contains a number of proteins
           associated with heavy metal resistance efflux systems
           for copper, silver, cadmium, and/or zinc. Most members
           encoded by genes adjacent to genes for encoding a member
           of the heavy metal sensor histidine kinase family
           (TIGRFAMs:TIGR01386), its partner in the two-component
           response regulator system.
          Length = 218

 Score = 25.5 bits (56), Expect = 3.2
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 55  AIRETVRIHGEEKMESLLKSLMSRMLAGEFSPERVI 90
             R  +RI    K   LL  LM R   GE  P  VI
Sbjct: 139 VSRGNIRITLTRKEFQLLWLLMRR--TGEVLPRTVI 172


>gnl|CDD|181363 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
          Length = 443

 Score = 24.9 bits (55), Expect = 4.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 2   ESIRSVEKKTQEFDALLLHEKMQVAIEYQNEAWAEGMAEGIEPEIIANAAITQ 54
           E   ++ +   E DALL+ +++Q  +     AWA     G+ P+I+A    TQ
Sbjct: 246 EFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAY-QQLGVRPDIVAFGKKTQ 297


>gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit;
           Provisional.
          Length = 244

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 41  GIEPEIIANAAITQAIRETV--RIHG-EEKMESL 71
           G+ PE I  AAIT A R  +  R HG +E+M+ L
Sbjct: 163 GLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQL 196


>gnl|CDD|179808 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42;
           Provisional.
          Length = 271

 Score = 24.8 bits (55), Expect = 5.6
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 42  IEPEIIANAAITQAIRETVRIHGEEKME 69
           +E E + +A IT    E   I   +K  
Sbjct: 211 LEEESVMDARITITTDEDGNIVAIQKSG 238


>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family
          protein.
          Length = 332

 Score = 24.7 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 2  ESIRSVEKKTQEFDALLLHEKMQVAIEYQNEAWAEGMAEGIEPE 45
          E +  V +++++F AL L EKM+V    ++  +   + E ++P+
Sbjct: 52 EFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKLDPK 95


>gnl|CDD|149870 pfam08936, CsoSCA, Carboxysome Shell Carbonic Anhydrase.
           Carboxysome Shell Carbonic Anhydrase is a bacterial
           carbonic anhydrase localized in the carboxysome, where
           it converts bicarbonate ions to carbon dioxide for use
           in carbon fixation. It contains three domains, these
           being: (1) an N-terminal domain composed primarily of
           four alpha-helices; (2) a catalytic domain containing a
           tightly bound zinc ion and (3) a C-terminal domain with
           weak structural similarity to the catalytic domain.
          Length = 459

 Score = 24.1 bits (53), Expect = 7.3
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 48  ANAAITQAIRETVRIHGEEKMESLLKSLMSRMLAGEFS 85
           A AAI +A+       G    +  ++  ++R+L    S
Sbjct: 285 ARAAIAEAVAADGWAQGPGAPDPGMRRFIARLLENNLS 322


>gnl|CDD|182863 PRK10954, PRK10954, periplasmic protein disulfide isomerase I;
           Provisional.
          Length = 207

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 32  EAWAEGMAEGIEPEIIANAAITQAIRETVRIHGEE 66
           +AWA  MA G+E ++     + + +++T  I    
Sbjct: 92  QAWAVAMALGVEDKV--TPPLFEGVQKTQTIQSAA 124


>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial.
           This model represents cystathionine beta-lyase
           (alternate name: beta-cystathionase), one of several
           pyridoxal-dependent enzymes of cysteine, methionine, and
           homocysteine metabolism. This enzyme is involved in the
           biosynthesis of Met from Cys.
          Length = 377

 Score = 24.5 bits (53), Expect = 7.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 6   SVEKKTQEFDALLLHEKMQVAIEYQNEAWAEGMAEGIEP 44
           S  + T+ F  ++L ++M V I Y +    E +A  I+P
Sbjct: 97  SAYEPTRYFCDIVL-KRMGVDITYYDPLIGEDIATLIQP 134


>gnl|CDD|162317 TIGR01357, aroB, 3-dehydroquinate synthase.  This model represents
           3-dehydroquinate synthase, the enzyme catalyzing the
           second of seven steps in the shikimate pathway of
           chorismate biosynthesis. Chorismate is the last common
           intermediate in the biosynthesis of all three aromatic
           amino acids.
          Length = 344

 Score = 24.1 bits (53), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 34  WAEGMAEGIEPEIIANAAITQAIRE 58
              GMAE I+  +IA+A +   +  
Sbjct: 164 LRSGMAEVIKHGLIADAELFDELES 188


>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold.  YqgF
          proteins are likely to function as an alternative to
          RuvC in most bacteria, and could be the principal
          holliday junction resolvases in low-GC Gram-positive
          bacteria. In Spt6p orthologues, the catalytic residues
          are substituted indicating that they lack enzymatic
          functions.
          Length = 99

 Score = 24.1 bits (53), Expect = 8.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 9  KKTQEFDALLLHEKMQVAIEYQNEAWA 35
          ++T+E  A LL E+  + +   +E  A
Sbjct: 69 RETEEAFAELLKERFNLPVVLVDERLA 95


>gnl|CDD|178358 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family
           protein.
          Length = 361

 Score = 24.0 bits (52), Expect = 9.7
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 1   MESIRSVEKKTQEFDALLLHEKMQVAI---------------EYQNEAWAEGMAEGIEPE 45
           +E +  +EK  +EF  L L EK +  +               E Q   W    A G+EP 
Sbjct: 95  LELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPH 154

Query: 46  IIAN 49
            I N
Sbjct: 155 FIRN 158


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0836    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,440,287
Number of extensions: 77966
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 33
Length of query: 91
Length of database: 5,994,473
Length adjustment: 59
Effective length of query: 32
Effective length of database: 4,719,601
Effective search space: 151027232
Effective search space used: 151027232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (22.8 bits)