HHsearch alignment for GI: 254780591 and conserved domain: TIGR00528
>TIGR00528 gcvT glycine cleavage system T protein; InterPro: IPR006223 This is a subfamily of glycine cleavage T proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH_3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process.
Probab=100.00 E-value=4.1e-39 Score=247.36 Aligned_cols=268 Identities=15% Similarity=0.088 Sum_probs=202.4
Q ss_pred ECCCCEEEEEECCCHHHHHHCCCCCCHHHCCC-CCEEEEEEECCCCCEEEEEEEEEECCC-----CCCEEHHHHHHHHHH
Q ss_conf 61794079998758787863213267310899-826899999799988998999970455-----520000333334567
Q gi|254780591|r 5 YLSNQSFIKVCGKSAIPFLQAIITADVLTLPY-KIARGSAILTPQGKILLYFLISKIEED-----TFILEIDRSKRDSLI 78 (273)
Q Consensus 5 ~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~-g~~~yt~~ln~~G~i~~D~~i~r~~~~-----~~~~~~~~~~~~~~~ 78 (273)
T Consensus 49 DvSHM~~~~l~G~~~~~fLq~l~~~D~~~Lt~sG~A~ys~lLna~GGvvDD~ivy~~~~dPeG~e~f~LvvNAa~~~kD~ 128 (394)
T TIGR00528 49 DVSHMGKVKLSGSKSLKFLQRLLPNDVDALTPSGKAQYSVLLNAQGGVVDDLIVYKEGEDPEGNERFLLVVNAATAEKDL 128 (394)
T ss_pred EEEECEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf 34203268982058998886332445864488784678898807978781278851488987450799998165416679
Q ss_pred HHHHHHHHCCCCCCCCCCCCE---EEEEECCC----CCCCCCCCC-----------CCCCCCCCCH--------HHHH--
Q ss_conf 776432100012235688436---99997185----432221112-----------3456644410--------1222--
Q gi|254780591|r 79 DKLLFYKLRSNVIIEIQPING---VVLSWNQE----HTFSNSSFI-----------DERFSIADVL--------LHRT-- 130 (273)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~----~~~~~~~~~-----------~~~~~~~~~~--------~~~~-- 130 (273)
T Consensus 129 ~w~~~hl~~~~~-~~~~~~~~eGr~LlAlQGPnaqakA~~~L~~l~~~~~~~kdLk~f~~~q~~e~~~~kaslv~IArtG 207 (394)
T TIGR00528 129 EWLKEHLEEEVT-LDTQSDEIEGRSLLALQGPNAQAKAKTILEPLLDQAVEGKDLKPFFFVQEAEFALKKASLVFIARTG 207 (394)
T ss_pred HHHHHHCCCCCE-EEHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCC
T ss_conf 999986268760-2011253357078886287657899999888873005644674002533356410465489982577
Q ss_pred ------HCCCCCCCCCHHHHHHHHHH-----------------HHCCCCCCCCCCCCCCCCCCCCCCCEEEEC-------
Q ss_conf ------10135555796788888875-----------------201334565432212331001112201331-------
Q gi|254780591|r 131 ------WGHNEKIASDIKTYHELRIN-----------------HGIVDPNTDFLPSTIFPHDALMDLLNGISL------- 180 (273)
Q Consensus 131 ------~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 180 (273)
T Consensus 208 YTGEdGfEI~~~~e~A~~~w~~l~~~Gda~g~~PcGLgARDtLRLEAGm~LYGqel~~~itP~eA~lgw~v~~~~rdlvd 287 (394)
T TIGR00528 208 YTGEDGFEIAVANEKAVEFWKKLVEAGDAYGVKPCGLGARDTLRLEAGMGLYGQELDEEITPLEAGLGWVVKKERRDLVD 287 (394)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCC
T ss_conf 76645415861873689999999862788631103553230135445888767466775285865067668606432335
Q ss_pred CCCCCCCCCCCCCCCCCCCCCE-EEEEEECCCC-CCCCCCEEEE---CC-EEEEEEEEEEC-------CEEEEEEEHHHC
Q ss_conf 4752133101321001244434-7887401345-6678988724---67-79679998347-------833689981310
Q gi|254780591|r 181 TKGCYIGQEVVSRIQHRNIIRK-RPMIITGTDD-LPPSGSPILT---DD-IEIGTLGVVVG-------KKALAIARIDKV 247 (273)
Q Consensus 181 ~k~~f~G~e~~~~~~~~~~~~~-~~~~~~~~~~-~~~~g~~i~~---~g-~~VG~vtS~~~-------~~gla~i~~~~~ 247 (273)
T Consensus 288 ~~~DF~G~~~L~~Q~~ng~~~kvlVGL~m~~KGP~~R~~~~v~~~da~g~~~~G~vTSGt~SPTL~n~~ialA~v~~e~~ 367 (394)
T TIGR00528 288 KKSDFIGRAVLEEQKENGTEKKVLVGLEMLEKGPIARNGYPVFLTDANGEKEVGIVTSGTLSPTLGNKNIALAYVPKELE 367 (394)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCC
T ss_conf 56763547899999865953467630334205740427824650367866043248807778320132122420333300
Q ss_pred CCCCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 36656786488688899997488769
Q gi|254780591|r 248 DHAIKKGMALTVHGVRVKASFPHWYK 273 (273)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273)
T Consensus 368 ~~G~~~~V~vR~k~~~ikv~K~~f~~ 393 (394)
T TIGR00528 368 KIGTKLEVEVRNKLYPIKVVKKPFVR 393 (394)
T ss_pred CCCCEEEEEECCEEEEEEEEECCCCC
T ss_conf 04878999981716623887146568