HHsearch alignment for GI: 254780591 and conserved domain: TIGR01375
>TIGR01375 soxG sarcosine oxidase, gamma subunit family; InterPro: IPR006280 These sequences represent the gamma subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The gamma subunit is the most divergent between operons of the four subunits. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form..
Probab=96.34 E-value=0.0033 Score=37.73 Aligned_cols=75 Identities=27% Similarity=0.319 Sum_probs=61.3
Q ss_pred EEECC-CCEEEEEECCCHHHHHHCCCCCCHHH--CCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHH
Q ss_conf 17617-94079998758787863213267310--8998268999997999889989999704555200003333345677
Q gi|254780591|r 3 SVYLS-NQSFIKVCGKSAIPFLQAIITADVLT--LPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLID 79 (273)
Q Consensus 3 ~~~L~-~~~~i~i~G~DA~~fL~~l~t~di~~--l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~ 79 (273)
T Consensus 73 ~vD~S~~~t~l~i~Gp~a~~vL~kg~a~Dl~l~~FpVG~~~~T~~----~~~--~~~l~Rtge~~F~i~v~rSFa~~~~~ 146 (154)
T TIGR01375 73 VVDLSGGRTALRISGPKAEEVLAKGCAVDLSLSAFPVGAARRTIF----AKV--EVVLWRTGEDTFEILVRRSFAESLWH 146 (154)
T ss_pred EEEECCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH----CCC--EEEEEECCCCEEEEEEEECCHHHHHH
T ss_conf 786338748999808458989871697155656564034566564----492--69999735573689996373568999
Q ss_pred HHHH
Q ss_conf 7643
Q gi|254780591|r 80 KLLF 83 (273)
Q Consensus 80 ~~~~ 83 (273)
T Consensus 147 ~L~~ 150 (154)
T TIGR01375 147 LLVD 150 (154)
T ss_pred HHHH
T ss_conf 9999