Query gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 273 No_of_seqs 105 out of 5937 Neff 10.5 Searched_HMMs 33803 Date Wed Jun 1 17:20:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780591.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1wsr_A Aminomethyltransferase 99.9 1.8E-21 5.3E-26 144.0 9.3 93 8-100 1-93 (94) 2 >1wos_A Aminomethyltransferase 99.8 1.1E-20 3.4E-25 139.3 9.4 90 8-97 1-90 (90) 3 >3gir_A Aminomethyltransferase 99.8 1.7E-20 5.2E-25 138.2 9.9 88 8-95 1-88 (89) 4 >1vlo_A Aminomethyltransferase 99.8 5.3E-20 1.6E-24 135.4 10.3 88 8-95 1-89 (90) 5 >2gag_A Heterotetrameric sarco 99.8 7.4E-20 2.2E-24 134.6 9.3 89 9-97 1-93 (93) 6 >1yx2_A Aminomethyltransferase 99.8 1E-19 3E-24 133.8 9.9 87 9-96 1-87 (88) 7 >1pj5_A N,N-dimethylglycine ox 99.8 2.1E-19 6.3E-24 131.9 9.8 93 9-106 1-93 (93) 8 >1vly_A SPOT PR51, unknown pro 99.8 4.1E-19 1.2E-23 130.3 9.6 86 8-94 1-86 (88) 9 >1v5v_A Aminomethyltransferase 99.8 8.5E-19 2.5E-23 128.4 9.0 84 9-92 1-84 (95) 10 >1vly_A SPOT PR51, unknown pro 99.6 2E-15 6E-20 108.7 9.3 128 143-273 2-138 (140) 11 >1pj5_A N,N-dimethylglycine ox 99.6 2.4E-15 7.2E-20 108.2 8.3 124 144-273 4-136 (144) 12 >1wos_A Aminomethyltransferase 99.6 5.1E-15 1.5E-19 106.4 9.2 130 139-273 2-137 (144) 13 >2gag_A Heterotetrameric sarco 99.4 4.7E-13 1.4E-17 94.9 6.2 94 180-273 2-111 (119) 14 >1yx2_A Aminomethyltransferase 99.0 6.5E-10 1.9E-14 76.5 7.7 74 200-273 2-81 (82) 15 >1v5v_A Aminomethyltransferase 99.0 1.3E-09 3.7E-14 74.9 8.3 73 201-273 2-80 (90) 16 >1wsr_A Aminomethyltransferase 99.0 7.6E-10 2.2E-14 76.2 6.5 74 200-273 2-81 (88) 17 >3gir_A Aminomethyltransferase 98.8 1.9E-08 5.7E-13 67.9 7.0 73 201-273 2-81 (87) 18 >1vlo_A Aminomethyltransferase 98.3 2.3E-06 6.8E-11 55.8 6.5 64 201-269 2-77 (77) 19 >1vlo_A Aminomethyltransferase 98.2 6.6E-07 1.9E-11 59.0 2.9 74 135-210 137-210 (214) 20 >1x31_C Sarcosine oxidase gamm 96.1 0.029 8.5E-07 31.9 7.4 73 7-85 36-110 (125) 21 >2gag_C Heterotetrameric sarco 95.9 0.039 1.1E-06 31.2 7.3 74 6-85 37-112 (129) 22 >3geh_A MNME, tRNA modificatio 95.9 0.02 5.8E-07 32.9 5.7 58 8-65 23-83 (114) 23 >1xzp_A Probable tRNA modifica 95.4 0.029 8.6E-07 31.9 5.1 56 8-65 47-103 (134) 24 >1pj5_A N,N-dimethylglycine ox 94.9 0.12 3.5E-06 28.3 6.8 73 4-82 79-157 (169) 25 >3gee_A MNME, tRNA modificatio 94.8 0.17 5.1E-06 27.3 7.5 57 8-65 29-91 (122) 26 >1wos_A Aminomethyltransferase 94.3 0.2 5.9E-06 27.0 6.9 71 4-80 17-90 (101) 27 >1yx2_A Aminomethyltransferase 91.5 0.47 1.4E-05 24.8 5.4 73 4-81 50-126 (167) 28 >1v5v_A Aminomethyltransferase 91.3 0.4 1.2E-05 25.2 4.9 61 4-70 50-114 (184) 29 >2gag_A Heterotetrameric sarco 90.7 0.95 2.8E-05 23.0 6.4 71 4-79 69-146 (195) 30 >1wsr_A Aminomethyltransferase 86.6 1.9 5.6E-05 21.3 6.3 68 8-80 54-124 (158) 31 >1vly_A SPOT PR51, unknown pro 78.5 4 0.00012 19.4 5.9 69 3-83 33-103 (110) 32 >1ei5_A D-aminopeptidase, DAP; 28.3 32 0.00095 14.1 1.8 65 181-245 66-134 (135) 33 >3c8c_A Methyl-accepting chemo 24.3 41 0.0012 13.5 1.9 26 28-53 48-73 (141) 34 >1k8w_A TRNA pseudouridine syn 22.1 45 0.0013 13.2 4.5 52 4-57 6-57 (74) No 1 >>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* (A:55-148) Probab=99.86 E-value=1.8e-21 Score=144.03 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=88.5 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHC Q ss_conf 94079998758787863213267310899826899999799988998999970455520000333334567776432100 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLR 87 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273) |+++++|+||||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++.++........++...... T Consensus 1 H~g~i~v~G~da~~~L~~l~t~dv~~l~~g~~~yt~~l~~~G~i~~d~~v~r~~e~~~~l~~~~~~~~~~~~~l~~~~~~ 80 (94) T 1wsr_A 1 HMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRE 80 (94) T ss_dssp TSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH T ss_conf 84899998689999998871457355332443212224788876760322012430235552012112223333333322 Q ss_pred CCCCCCCCCCCEE Q ss_conf 0122356884369 Q gi|254780591|r 88 SNVIIEIQPINGV 100 (273) Q Consensus 88 ~~~~~~~~~~~~~ 100 (273) .++.+.+.++++. T Consensus 81 ~~V~i~d~t~~~~ 93 (94) T 1wsr_A 81 LQNQGRDVGLEVL 93 (94) T ss_dssp HHHTTCCCEEEEC T ss_pred HCCCCCEEEEEEC T ss_conf 1034623789865 No 2 >>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:50-139) Probab=99.84 E-value=1.1e-20 Score=139.32 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=85.5 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHC Q ss_conf 94079998758787863213267310899826899999799988998999970455520000333334567776432100 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLR 87 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273) |+++|+|+||||.+|||+++|||++++++|+++||++||++|+|++|++|+|.+++.|+++.++........++..+... T Consensus 1 H~~~i~v~G~da~~~L~~~~t~dv~~l~~g~~~~~~~ln~~G~i~~d~~v~~~~ed~~~l~~~~~~~~~~~~~l~~~~~~ 80 (90) T 1wos_A 1 HMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKN 80 (90) T ss_dssp TSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCTT T ss_pred CCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 82899998799999998873578644653332210102655538984001111101100234544234444431003333 Q ss_pred CCCCCCCCCC Q ss_conf 0122356884 Q gi|254780591|r 88 SNVIIEIQPI 97 (273) Q Consensus 88 ~~~~~~~~~~ 97 (273) .++.+.+.++ T Consensus 81 ~~v~i~d~td 90 (90) T 1wos_A 81 FDVEVSNISD 90 (90) T ss_dssp SSCEEEECGG T ss_pred CCCCCEEECC T ss_conf 4654034123 No 3 >>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} (A:83-171) Probab=99.84 E-value=1.7e-20 Score=138.25 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=82.5 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHC Q ss_conf 94079998758787863213267310899826899999799988998999970455520000333334567776432100 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLR 87 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273) |+++|+|+||||.+|||+++|||++++++|+++||+|||++|+|++|++|+|.+++.|+++.++........+++..... T Consensus 1 H~~~i~v~G~Da~~fLq~l~t~di~~l~~g~~~~t~~ln~~G~i~~d~~i~~~~ed~~~l~~~~~~~~~~~~~l~~~~~~ 80 (89) T 3gir_A 1 HMKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG 80 (89) T ss_dssp TSEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT T ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCC T ss_conf 84899998989999998776546332210245412564277762356688752266432223222321010000111356 Q ss_pred CCCCCCCC Q ss_conf 01223568 Q gi|254780591|r 88 SNVIIEIQ 95 (273) Q Consensus 88 ~~~~~~~~ 95 (273) .++.+.+. T Consensus 81 ~~v~i~~~ 88 (89) T 3gir_A 81 FECQVIAL 88 (89) T ss_dssp SSCEEEEC T ss_pred CCCCCCCC T ss_conf 54454673 No 4 >>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:63-152) Probab=99.82 E-value=5.3e-20 Score=135.42 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=80.5 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHC-CCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHH Q ss_conf 940799987587878632132673108-9982689999979998899899997045552000033333456777643210 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTL-PYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKL 86 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l-~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (273) |+++|+|+||||.+|||+++|||+.++ ++|+++||+|||++|+|++|++|+|++++.|+++.++........+++.... T Consensus 1 H~g~i~v~G~da~~fL~~~~t~di~~l~~~g~~~yt~~ln~~G~i~~d~~i~~~~e~~~~l~~~~~~~~~~~~~l~~~~~ 80 (90) T 1vlo_A 1 HXTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGXLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAE 80 (90) T ss_dssp TSEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHG T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHH T ss_conf 71899998998999999876521222455521031124236873998502332346753145400148899998887653 Q ss_pred CCCCCCCCC Q ss_conf 001223568 Q gi|254780591|r 87 RSNVIIEIQ 95 (273) Q Consensus 87 ~~~~~~~~~ 95 (273) ...+.+.+. T Consensus 81 ~~~v~v~~~ 89 (90) T 1vlo_A 81 PFGIEITVR 89 (90) T ss_dssp GGTCEEEEC T ss_pred CCCCCCCCC T ss_conf 124436676 No 5 >>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:632-724) Probab=99.81 E-value=7.4e-20 Score=134.58 Aligned_cols=89 Identities=21% Similarity=0.220 Sum_probs=77.7 Q ss_pred CEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHH-- Q ss_conf 407999875878786321326731089982689999979998899899997045552000033333456777643210-- Q gi|254780591|r 9 QSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKL-- 86 (273) Q Consensus 9 ~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 86 (273) ++.|+|+||||.+|||+++|||++++++|++.||+|||++|+|++|++|+|++++.|+++.++........|+..+.. T Consensus 1 mg~i~v~G~da~~~L~~l~t~di~~l~~g~~~yt~~ln~~G~v~~d~~v~r~~e~~~~l~~~~~~~~~~~~~l~~~~~~~ 80 (93) T 2gag_A 1 LGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTE 80 (93) T ss_dssp SEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHT T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEECCEECCCCEEEECCCCEECCCCEEEEEECHHHHHHHHHHHHHHHHCC T ss_conf 18999983828999988766321358987220010044897698704110203320256412036888888776544302 Q ss_pred --CCCCCCCCCCC Q ss_conf --00122356884 Q gi|254780591|r 87 --RSNVIIEIQPI 97 (273) Q Consensus 87 --~~~~~~~~~~~ 97 (273) ..++.+.+.|+ T Consensus 81 ~~~~~V~i~d~td 93 (93) T 2gag_A 81 WPDLDVTCTSVTE 93 (93) T ss_dssp CTTSCCEEEECTT T ss_pred CCCCCEEEEECCC T ss_conf 5446328997442 No 6 >>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} (A:55-142) Probab=99.81 E-value=1e-19 Score=133.77 Aligned_cols=87 Identities=26% Similarity=0.285 Sum_probs=79.0 Q ss_pred CEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCC Q ss_conf 40799987587878632132673108998268999997999889989999704555200003333345677764321000 Q gi|254780591|r 9 QSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRS 88 (273) Q Consensus 9 ~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273) .|.|+|+||||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++.++.....+..++++....+ T Consensus 1 ~G~i~v~G~Da~~fL~~l~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (88) T 1yx2_A 1 XGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWXKEHAAGD 80 (88) T ss_dssp SEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCCSS T ss_pred EEEEEEECCCHHHHHHHHCHHHEECCCCCCEEEEECCCCCCCEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 08999987999999987451112246763101000035775233224889850576020232345665444666403662 Q ss_pred CCCCCCCC Q ss_conf 12235688 Q gi|254780591|r 89 NVIIEIQP 96 (273) Q Consensus 89 ~~~~~~~~ 96 (273) +++.+.+ T Consensus 81 -V~i~d~t 87 (88) T 1yx2_A 81 -VQIDNQS 87 (88) T ss_dssp -CEEEECT T ss_pred -EEECCCC T ss_conf -2301350 No 7 >>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} (A:508-600) Probab=99.80 E-value=2.1e-19 Score=131.89 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=82.4 Q ss_pred CEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCC Q ss_conf 40799987587878632132673108998268999997999889989999704555200003333345677764321000 Q gi|254780591|r 9 QSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRS 88 (273) Q Consensus 9 ~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273) +++|+|+||||.+|||+++|||++. ++|+++|++|||++|+|++|++|+|++++.|+++.+++.......+++.+.... T Consensus 1 ~~~i~v~G~da~~fL~~~~t~di~~-~~g~~~~~~~l~~~G~i~~d~~i~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~ 79 (93) T 1pj5_A 1 LKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQS 79 (93) T ss_dssp SCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHCCCC-CCCCEEECCEECCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 4348997476899865565303446-778500111002578652462466402313799833210588888776655541 Q ss_pred CCCCCCCCCCEEEEEECC Q ss_conf 122356884369999718 Q gi|254780591|r 89 NVIIEIQPINGVVLSWNQ 106 (273) Q Consensus 89 ~~~~~~~~~~~~~~~~~g 106 (273) ++..++ +.+++++| T Consensus 80 ~~~~~d----~~~~~i~G 93 (93) T 1pj5_A 80 GSATDW----VQVRDTTG 93 (93) T ss_dssp SCTTCC----CEEEECGG T ss_pred CCCCCC----CEEEECCC T ss_conf 565433----11330451 No 8 >>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} (A:38-125) Probab=99.79 E-value=4.1e-19 Score=130.26 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=72.1 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHC Q ss_conf 94079998758787863213267310899826899999799988998999970455520000333334567776432100 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLR 87 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273) +|++|+|+|+||.+|||+++||||+++++|++.||+|||++|+|++|++|+|++++.++++.++.......++. ..... T Consensus 1 ~f~~i~v~G~Da~~fL~~l~t~di~~l~~g~~~~t~~ln~~G~i~~d~~v~~~~e~~~l~~~~~~~~~~~~~l~-~~~~~ 79 (88) T 1vly_A 1 DWALATITGADSEKYXQGQVTADVSQXAEDQHLLAAHCDAKGKXWSNLRLFRDGDGFAWIERRSVREPQLTELK-KYAVF 79 (88) T ss_dssp TEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHH-TTCSS T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHH-HHHCC T ss_conf 83699998889999961543207201699978999998788887998999982895799864000025666766-54014 Q ss_pred CCCCCCC Q ss_conf 0122356 Q gi|254780591|r 88 SNVIIEI 94 (273) Q Consensus 88 ~~~~~~~ 94 (273) .++.+.+ T Consensus 80 ~~V~i~d 86 (88) T 1vly_A 80 SKVTIAP 86 (88) T ss_dssp SSCEEEE T ss_pred CCCCCCC T ss_conf 4322234 No 9 >>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} (A:55-149) Probab=99.78 E-value=8.5e-19 Score=128.40 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=76.6 Q ss_pred CEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCC Q ss_conf 40799987587878632132673108998268999997999889989999704555200003333345677764321000 Q gi|254780591|r 9 QSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYKLRS 88 (273) Q Consensus 9 ~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273) ++.|+|+||||.+|||+++|||++++++|++.||++||++|+|++|++|+|++++.|+++.++........++..+.... T Consensus 1 mg~i~v~G~da~~~L~~~~t~di~~l~~g~~~~t~~l~~~G~i~~d~~v~r~~e~~~~l~~~~~~~~~~~~~l~~~~~~~ 80 (95) T 1v5v_A 1 MGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTI 80 (95) T ss_dssp SEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCEECCCCHHHHHHHHHCCCCCHHHH T ss_conf 38999986999999987631276213688721388884689588866997502300000345245544332022101112 Q ss_pred CCCC Q ss_conf 1223 Q gi|254780591|r 89 NVII 92 (273) Q Consensus 89 ~~~~ 92 (273) .+.. T Consensus 81 ~~~~ 84 (95) T 1v5v_A 81 EQFT 84 (95) T ss_dssp HTTS T ss_pred HCCC T ss_conf 1145 No 10 >>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} (A:199-338) Probab=99.62 E-value=2e-15 Score=108.68 Aligned_cols=128 Identities=19% Similarity=0.280 Sum_probs=89.7 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEE-EEEEECCCCCCCCCCEEE Q ss_conf 8888887520133456543221233100111220133147521331013210012444347-887401345667898872 Q gi|254780591|r 143 TYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKR-PMIITGTDDLPPSGSPIL 221 (273) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~ 221 (273) .|+..+.+.+.+.+..+... ...+..........+++.|+||+|||+++|++.++..+++ +++....+..+..+++|+ T Consensus 2 a~~~lRiE~g~~~~g~d~~~-~~~P~E~gl~~~~~~~~~Kg~fiGqe~l~r~~~~g~~~r~lv~l~~~~~~~~~~~~~i~ 80 (140) T 1vly_A 2 QWLALNIEAGFPVIDAANSG-QFIPQATNLQALGGISFKKGCYTGQEXVARAKFRGANKRALWLLAGSASRLPEAGEDLE 80 (140) T ss_dssp HHHHHHHHHTCCCCCGGGTT-SCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTSCCEEEEEEEECCSSCCCTTCCEE T ss_pred HHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEE T ss_conf 88999998435311655671-13567776666424576644534489999999861675179999966888899969888 Q ss_pred E----CCEEEEEEEEEEC----CEEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 4----6779679998347----83368998131036656786488688899997488769 Q gi|254780591|r 222 T----DDIEIGTLGVVVG----KKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 222 ~----~g~~VG~vtS~~~----~~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) . +++.||+|||+++ ++||||++.++...+. .+++..+..++++..+|||- T Consensus 81 ~~~~~~g~~vG~vts~~~spg~~iala~v~~~~~~~g~--~v~i~~~~~~a~v~~~Pf~d 138 (140) T 1vly_A 81 LKXGENWRRTGTVLAAVKLEDGQVVVQVVXNNDXEPDS--IFRVRDDANTLHIEPLPYSL 138 (140) T ss_dssp EEETTEEEEECEEEEEEECTTSCEEEEEEEETTCCTTC--CEESTTCSSCEEEECCSSCC T ss_pred EECCCCCEEEEEEEEEEECCCCCEEEEEEEHHCCCCCC--EEEECCCCCEEEEECCCCCC T ss_conf 73388990789999976889988999999820169998--89973899689998899888 No 11 >>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} (A:687-830) Probab=99.61 E-value=2.4e-15 Score=108.23 Aligned_cols=124 Identities=11% Similarity=0.130 Sum_probs=93.0 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCCCCCCEEEE Q ss_conf 88888752013345654322123310011122013314752133101321001244434788740134-56678988724 Q gi|254780591|r 144 YHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTD-DLPPSGSPILT 222 (273) Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~ 222 (273) ++..+.+.+.+.+. .+......+....+.+.++++|+||+||+++++++..+..++++++..... ..+..++.++. T Consensus 4 ~~~lRiE~G~~~~g---~d~~~~~~P~e~gL~~~v~~~K~~fiG~eal~r~~~~g~~rrlv~l~~~~~~~~~~~~~~~~~ 80 (144) T 1pj5_A 4 FSSLRLEKGYRSWG---TDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKEPVFY 80 (144) T ss_dssp HHHHHHHTTCCCBT---TTBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCCSTTCSEEEEEEEETTSCCCCCSCCEEEE T ss_pred HHHHHHHCCCCCCC---CCCCCCCCHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEE T ss_conf 66799974887557---668999897896960222799999578999999986599739999998589857899984853 Q ss_pred CCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCCCC Q ss_conf 67796799983478------3368998131036656786488688--899997488769 Q gi|254780591|r 223 DDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHWYK 273 (273) Q Consensus 223 ~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w~~ 273 (273) +|+.||+|||+++| ++|||++.++.. ...+++.+.+ .++++..+|||. T Consensus 81 ~g~~vG~vtS~~~sp~l~~~iala~i~~~~~~---g~~~~v~~~~~~~~a~v~~~pf~d 136 (144) T 1pj5_A 81 KEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSV---GDSVDIEYFGRRITATVTEDPLYD 136 (144) T ss_dssp TTEEEEECCSEEEETTTTEEEEEEEEETTCCT---TCEEEEEETTEEEEEEEECSCSSC T ss_pred CCCEEEECCEEEECHHCCCEEEEEEECCCCCC---CCEEEEEECCEEEEEEEECCCCCC T ss_conf 99428992334232413907999996777589---998999999979999996679888 No 12 >>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:221-364) Probab=99.60 E-value=5.1e-15 Score=106.36 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=92.7 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC Q ss_conf 79678888887520133456543221233100111220133147521331013210012444347887401345667898 Q gi|254780591|r 139 SDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGS 218 (273) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 218 (273) .+...++..+.+.+...+..+.... ..+....+.| ....|+||+||+++++++.. ..++++++....+..+..++ T Consensus 2 ~G~~a~~~lRiE~g~~~~g~d~~~~---~~P~E~gl~~-~v~~k~~fiGkeal~r~~~~-~~~rlv~l~~~~~~~~~~g~ 76 (144) T 1wos_A 2 AGLGARDVCRLEATYLLYGQDMDEN---TNPFEVGLSW-VVKLNKDFVGKEALLKAKEK-VERKLVALELSGKRIARKGY 76 (144) T ss_dssp CCHHHHHHHHHHTTCCCBTTTBCTT---SCGGGGTCGG-GCCTTSCCTTHHHHHHHHHT-CCEEEEEEEESSSCCCCTTC T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCC---CCCCCCCCCE-EEEECCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCCCCC T ss_conf 2545010023111754447658988---7714467751-78826874401353222345-42014544321002468998 Q ss_pred EEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 872467796799983478------3368998131036656786488688899997488769 Q gi|254780591|r 219 PILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 219 ~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) +|+.+|++||+|||+++| +||||++.++...+....+++..+..++++..+|||. T Consensus 77 ~i~~~g~~VG~vtS~~~sp~l~~~ialA~i~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~d 137 (144) T 1wos_A 77 EVLKNGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPFYR 137 (144) T ss_dssp EEEETTEEEEEEEEEEEETTTTEEEEEEEEETTCCTTCEEEEEETTTEEEEEEEECSCSCC T ss_pred EEEECCEEEEEEEEEEECHHCCCEEEEEEECCCCCCCCEEEEEEECCEEEEEEEECCCCCC T ss_conf 6888990889975466963049389999999555899999999739969999996789849 No 13 >>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:847-965) Probab=99.40 E-value=4.7e-13 Score=94.87 Aligned_cols=94 Identities=15% Similarity=0.004 Sum_probs=73.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCE-EEEEEECCCCCC---------CCCCEEEECCEEEEEEEEEECC------EEEEEEE Q ss_conf 14752133101321001244434-788740134566---------7898872467796799983478------3368998 Q gi|254780591|r 180 LTKGCYIGQEVVSRIQHRNIIRK-RPMIITGTDDLP---------PSGSPILTDDIEIGTLGVVVGK------KALAIAR 243 (273) Q Consensus 180 ~~k~~f~G~e~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~g~~i~~~g~~VG~vtS~~~~------~gla~i~ 243 (273) ..|+||+|||++.+++..+..++ ++++....+..+ ..+++|+.+++.||+|||+++| +||||++ T Consensus 2 ~kk~dFiGkeal~~~~~~g~~r~~Lvgl~~~~~~~~~~~~~~~~~~~~~~i~~~g~~vG~vTS~~~Sp~l~~~Iala~i~ 81 (119) T 2gag_A 2 SKLKDFIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRTFGLALIK 81 (119) T ss_dssp CSSSCCTTGGGGGSHHHHCSSCEEEEEEEESSTTCCCCTTCEEEETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEE T ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEECHHCCEEEEEEEEC T ss_conf 89999677999999986499863999999947876788997467589610378867279995775764339079999999 Q ss_pred HHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 131036656786488688899997488769 Q gi|254780591|r 244 IDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) .++...+....+++..+..+++++.+|||. T Consensus 82 ~~~~~~G~~v~v~~~g~~~~a~v~~~Pf~d 111 (119) T 2gag_A 82 NGRNRIGEVLKTPVGDQLVDVVVSETVLYD 111 (119) T ss_dssp TGGGCTTCEEEEEETTEEEEEEEECSCCSS T ss_pred CCCCCCCCEEEEEECCEEEEEEEECCCCCC T ss_conf 433689988999989999999995889998 No 14 >>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} (A:284-365) Probab=99.05 E-value=6.5e-10 Score=76.52 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=63.4 Q ss_pred CCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 4347887401345667898872467796799983478------3368998131036656786488688899997488769 Q gi|254780591|r 200 IRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) +++++++..+.+..++.+++|+.++++||+|||+.+| +||||++.++...+....+++..+..+++++.+|||+ T Consensus 2 krklvgl~l~g~~~~~~g~~i~~dg~~VG~vTS~~ySp~~~~~Iala~v~~~~~~~G~~l~v~~~~~~~~a~v~~~Pf~D 81 (82) T 1yx2_A 2 KRKLVGLEXIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYK 81 (82) T ss_dssp SEEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECCCC-- T ss_pred CEEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEEECHHCCEEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCCC T ss_conf 76999999569877899997988991899931588971069189999997333589988999999999999998788878 No 15 >>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} (A:312-401) Probab=99.02 E-value=1.3e-09 Score=74.87 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=61.7 Q ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 347887401345667898872467796799983478------3368998131036656786488688899997488769 Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) ++++++..+.+..++.+++|+.+|++||+|||+++| +||||++.++...+....+++..+..+++++..|||. T Consensus 2 rrlvgl~l~~~~~~~~g~~v~~dg~~VG~vTS~~~Sp~~g~~Iala~v~~~~~~~G~~v~v~~~~~~~~a~v~~~Pf~d 80 (90) T 1v5v_A 2 RKLVHFKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYD 80 (90) T ss_dssp EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSC T ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEECCEEECHHCCCEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCCC T ss_conf 3157899757878899997977993899914255871059079999988777699988999999979999997889808 No 16 >>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* (A:288-375) Probab=99.00 E-value=7.6e-10 Score=76.15 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=61.6 Q ss_pred CCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 4347887401345667898872467796799983478------3368998131036656786488688899997488769 Q gi|254780591|r 200 IRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) .++++++..+.+..++.++.|+.+|+.||+|||+++| +||||+..++...+....+++..+..++++..+|||. T Consensus 2 ~rklvgl~~~~~~~~~~g~~v~~~g~~vG~vTS~~~sp~l~~~Iala~i~~~~~~~G~~v~v~~~g~~~~a~v~~~Pf~d 81 (88) T 1wsr_A 2 QRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVP 81 (88) T ss_dssp SCEEEEEEESSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSC T ss_pred CEEEEEEECCCCCCCCCCCEEECCCEEEEEECEEEECHHCCEEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCCC T ss_conf 20257752147755799966927991998927286974339389999998778799988999999979999995899668 No 17 >>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} (A:307-393) Probab=98.78 E-value=1.9e-08 Score=67.92 Aligned_cols=73 Identities=11% Similarity=-0.028 Sum_probs=56.8 Q ss_pred CEEEEEEECCCCCCCCCC-EEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC Q ss_conf 347887401345667898-872467796799983478------3368998131036656786488688899997488769 Q gi|254780591|r 201 RKRPMIITGTDDLPPSGS-PILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273) Q Consensus 201 ~~~~~~~~~~~~~~~~g~-~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273) ++++++..+.+..++.+. .++.+|++||+|||+++| +||||++.++.+.+....+++..+-.+++++++|||. T Consensus 2 rklvgl~~~~~~~~~~g~~~~~~~g~~VG~vTS~~~sp~l~~~Iala~v~~~~~~~G~~l~i~~~~~~~~a~V~~~pf~d 81 (87) T 3gir_A 2 RCRVGLKPQTRQPIRAGAVLFDNEGNRIGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVE 81 (87) T ss_dssp SEEEEEEESSSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSC T ss_pred CEEEEECCCCCCCCCCCCEEECCCCEEEEEECCEEECHHCCEEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCCC T ss_conf 01686314788767899988858990898818078763128189999999778589998999999989999997789879 No 18 >>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:290-366) Probab=98.27 E-value=2.3e-06 Score=55.81 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=47.7 Q ss_pred CEEEEEEECCCCCCCCCCEEE----ECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEEC Q ss_conf 347887401345667898872----467796799983478------3368998131036656786488688--8999974 Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPIL----TDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASF 268 (273) Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~----~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~ 268 (273) +|++++..+....++.|.+++ .+|+.||.|||+++| +||||++.+. + ..+++.+.+ .+++|.+ T Consensus 2 rklvgl~~~~~~~~~~g~~i~~~~~~~g~~vG~vTSg~ysp~l~~~Iala~v~~~~---G--~~~~v~~~g~~~~A~Vv~ 76 (77) T 1vlo_A 2 EKLVGLVXTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---G--ETAIVQIRNREXPVKVTK 76 (77) T ss_dssp CEEEEEEECSSSCCCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTTC---C--SEEEEEETTEEEEEEEEC T ss_pred CEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEEEEECHHCCCEEEEEEEECCC---C--CEEEEEECCEEEEEEEEC T ss_conf 24999995245555899857830367986688998778757219679999984456---9--979999999999999967 Q ss_pred C Q ss_conf 8 Q gi|254780591|r 269 P 269 (273) Q Consensus 269 P 269 (273) | T Consensus 77 P 77 (77) T 1vlo_A 77 P 77 (77) T ss_dssp S T ss_pred C T ss_conf 9 No 19 >>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:1-62,A:153-289,A:367-381) Probab=98.22 E-value=6.6e-07 Score=59.00 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=46.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC Q ss_conf 5555796788888875201334565432212331001112201331475213310132100124443478874013 Q gi|254780591|r 135 EKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGT 210 (273) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~ 210 (273) .....+...++..+.+.+.+....+..... .+..........+++.||||+|||++++++.++..++ +++..+. T Consensus 137 g~~~~G~~a~~~lRiE~G~p~~g~d~~~~~-~P~Eagl~~~~~~~~~KgcfiGqealar~~~~g~~k~-v~l~~~g 210 (214) T 1vlo_A 137 GVKPCGLGARDTLRLEAGXNLYGQEXDETI-SPLAANXGWTIAWEPADRDFIGREALEVQREHGVFVR-NGKAVAG 210 (214) T ss_dssp TCEECCHHHHHHHHHHTTCCCBTTTBCTTS-CGGGTTCGGGCCCCSTTCCCTTHHHHHHHHHHCCCEE-TTEECGG T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCC-CCCEECC T ss_conf 997648789999998679864554345654-8554563012100224566530122110035778079-9980046 No 20 >>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* (C:1-36,C:118-206) Probab=96.14 E-value=0.029 Score=31.89 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=57.3 Q ss_pred CCCEEEEEECCCHHHHHHCCCCCCH--HHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHH Q ss_conf 7940799987587878632132673--10899826899999799988998999970455520000333334567776432 Q gi|254780591|r 7 SNQSFIKVCGKSAIPFLQAIITADV--LTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFY 84 (273) Q Consensus 7 ~~~~~i~i~G~DA~~fL~~l~t~di--~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (273) -+++.|.|+||.|.+.|+.++..|+ .+++.+++..+-+ |++ ..++.|.+|+-|.+.............+... T Consensus 36 ~d~~~i~IqGP~A~eVLakl~~~Dl~~~~f~~~~~~~~~i----~~~--~vrv~rtGE~GfEI~~~~s~a~~lwd~Ll~A 109 (125) T 1x31_C 36 ANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSL----ANI--PVLLWRTGEQSWRILPRASFTEHTVHWLIDA 109 (125) T ss_dssp CTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEE----TTE--EEEEEEEETTEEEEECBGGGHHHHHHHHHHH T ss_pred CEEEEEEEECCCEEEEEEECCCCCCCHHHHHCCCCEEEEE----CCE--EEEEEECCCCEEEEEEEHHHHHHHHHHHHHH T ss_conf 7024688516632222211268754667751584102558----799--9999984989799998789999999999999 Q ss_pred H Q ss_conf 1 Q gi|254780591|r 85 K 85 (273) Q Consensus 85 ~ 85 (273) - T Consensus 110 g 110 (125) T 1x31_C 110 M 110 (125) T ss_dssp H T ss_pred H T ss_conf 9 No 21 >>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* (C:1-38,C:120-210) Probab=95.94 E-value=0.039 Score=31.15 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=57.5 Q ss_pred CCCCEEEEEECCCHHHHHHCCCCCCHH--HCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH Q ss_conf 179407999875878786321326731--089982689999979998899899997045552000033333456777643 Q gi|254780591|r 6 LSNQSFIKVCGKSAIPFLQAIITADVL--TLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273) Q Consensus 6 L~~~~~i~i~G~DA~~fL~~l~t~di~--~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273) .-+++.|.|+||.|.+.|+.++..|++ .++.+++..+-+ |++ -.++.|.+|.-|-+.............+.. T Consensus 37 ~~d~a~iaIqGPkA~eVLa~l~~~Dls~~~fp~~~~~~~~i----~~v--~vrv~rTGE~GfEI~v~~s~a~~lwd~Ll~ 110 (129) T 2gag_C 37 IANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSV----ANI--PVLLWRTGEQAWRIMPRASFTEHTVHWLVD 110 (129) T ss_dssp CCTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TTE--EEEEEEEETTEEEEEEBGGGHHHHHHHHHH T ss_pred CCCCCEEEECCHHHHHHHHHCCCCCCCHHHCCCCEEEEECC----CCE--EEEEEECCCCEEEEEEEHHHHHHHHHHHHH T ss_conf 79300378747224335552178545744545661554135----876--999998698979999888999999999999 Q ss_pred HH Q ss_conf 21 Q gi|254780591|r 84 YK 85 (273) Q Consensus 84 ~~ 85 (273) .- T Consensus 111 AG 112 (129) T 2gag_C 111 AM 112 (129) T ss_dssp HH T ss_pred HH T ss_conf 88 No 22 >>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} (A:1-114) Probab=95.90 E-value=0.02 Score=32.87 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=45.9 Q ss_pred CCEEEEEECCCHHHHHHCCCCCC-HHHCCCCCEEEEEEECC-CCCEEEEEEEEEE-CCCCC Q ss_conf 94079998758787863213267-31089982689999979-9988998999970-45552 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITAD-VLTLPYKIARGSAILTP-QGKILLYFLISKI-EEDTF 65 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~d-i~~l~~g~~~yt~~ln~-~G~i~~D~~i~r~-~~~~~ 65 (273) -.++|||+|++|.+.++.++... -...++-+..|..+.++ +|.++|+.++..+ +.+.| T Consensus 23 aIavIRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~i~d~~~~~~iDevl~~~f~~P~Sy 83 (114) T 3geh_A 23 SVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSY 83 (114) T ss_dssp SCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSS T ss_pred EEEEEEEECHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC T ss_conf 7999990006099999998578877777761789988763888877106999997899998 No 23 >>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} (A:1-134) Probab=95.42 E-value=0.029 Score=31.88 Aligned_cols=56 Identities=5% Similarity=0.062 Sum_probs=42.3 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE-CCCCC Q ss_conf 94079998758787863213267310899826899999799988998999970-45552 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI-EEDTF 65 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~-~~~~~ 65 (273) -.++|||+||+|.+.++.++...-. .+++..|-..+.+.|..+|+.+++.+ +.+.| T Consensus 47 aIaVIRiSG~~a~~i~~~l~~~~~~--~~~r~~~~g~~~~~~~~iDe~lv~~f~aP~Sf 103 (134) T 1xzp_A 47 AIAILRLSGPDSWKIVQKHLRTRSK--IVPRKAIHGWIHENGEDVDEVVVVFYKSPKSY 103 (134) T ss_dssp SCEEEEEESSSHHHHHHTTEEESSC--CCBTBCEEEEECCSSCCCCEEEEEEECTTSSS T ss_pred EEEEEEEECHHHHHHHHHHHCCCCC--CCCCEEEEEEECCCCCCCCEEEEEEECCCCCC T ss_conf 6999995505189999998466888--99837898478589988746999998999998 No 24 >>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} (A:425-507,A:601-686) Probab=94.85 E-value=0.12 Score=28.32 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=53.8 Q ss_pred EECC-CCEEEEEECCCHHHHHHCCCCCCHH--HCCCCCEEEEEEECCCCCEEEEEEEEEEC---CCCCCEEHHHHHHHHH Q ss_conf 7617-9407999875878786321326731--08998268999997999889989999704---5552000033333456 Q gi|254780591|r 4 VYLS-NQSFIKVCGKSAIPFLQAIITADVL--TLPYKIARGSAILTPQGKILLYFLISKIE---EDTFILEIDRSKRDSL 77 (273) Q Consensus 4 ~~L~-~~~~i~i~G~DA~~fL~~l~t~di~--~l~~g~~~yt~~ln~~G~i~~D~~i~r~~---~~~~~~~~~~~~~~~~ 77 (273) +=+| ++++|.|.||.|.+.|+.++.-|++ .++.+++..+.+ ++ .+++|.|.+ |.-|-+.......... T Consensus 79 ~D~S~~~a~l~IqGP~A~~iL~~l~~~dls~~~fp~~~~~~~~i----~g--~~v~i~R~gytGE~GfEI~~p~~~a~~v 152 (169) T 1pj5_A 79 YDMTPGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVI----GG--IPVTAMRLSYVGELGWELYTSADNGQRL 152 (169) T ss_dssp EECTTGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TT--EEEEEECCCTTSSSEEEEEEEHHHHHHH T ss_pred EECCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE----CC--EEEEEECCCCCCCCCEEEECCHHHHHHH T ss_conf 84667055777648379999997302333320155430258999----99--7865521653578853772588999999 Q ss_pred HHHHH Q ss_conf 77764 Q gi|254780591|r 78 IDKLL 82 (273) Q Consensus 78 ~~~~~ 82 (273) ...+. T Consensus 153 ~~~L~ 157 (169) T 1pj5_A 153 WDALW 157 (169) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 25 >>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* (A:1-122) Probab=94.77 E-value=0.17 Score=27.34 Aligned_cols=57 Identities=5% Similarity=0.118 Sum_probs=42.1 Q ss_pred CCEEEEEECCCHHHHHHCCCCC-----CHHHCCCCCEEEEEEECCCCCEEEEEEEEEE-CCCCC Q ss_conf 9407999875878786321326-----7310899826899999799988998999970-45552 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITA-----DVLTLPYKIARGSAILTPQGKILLYFLISKI-EEDTF 65 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~-----di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~-~~~~~ 65 (273) -.++|||+|++|.+-++.++.. +++.+++.+..|..+.++ |.++|+.+++.+ +.+.| T Consensus 29 aIaVIRiSG~~a~~i~~~l~~~~~~~~~~~~~~~r~~~~g~~~d~-~~~iDe~lv~~f~~P~Sy 91 (122) T 3gee_A 29 ALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSF 91 (122) T ss_dssp SEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEEEEBTTBSS T ss_pred EEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCC-CCCCCEEEEEEECCCCCC T ss_conf 799999546448999999972335777666666517898455588-860662899996799998 No 26 >>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:30-49,A:140-220) Probab=94.27 E-value=0.2 Score=26.98 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=52.1 Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEEC---CCCCCEEHHHHHHHHHHHH Q ss_conf 7617940799987587878632132673108998268999997999889989999704---5552000033333456777 Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIE---EDTFILEIDRSKRDSLIDK 80 (273) Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~---~~~~~~~~~~~~~~~~~~~ 80 (273) |=.|+++.|.|.||.|.+.|+.++..+++.++...+..+-+ |+ .++++.|.+ |.-|-+..+........+. T Consensus 17 fd~sd~a~laiqGP~a~~vl~~l~~~~l~~~~~~~~~~~~i----~g--~~v~i~R~gytGE~GyEi~~~~~~a~~lw~~ 90 (101) T 1wos_A 17 FDVSTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIV----AG--VETLVSRTGYTGEDGFELMLEAKNAPKVWDA 90 (101) T ss_dssp EECTGEEEEEEESTTHHHHHGGGBSSCSTTSCTTBEEEEEE----TT--EEEEEESCCSSSSSEEEEEEEGGGHHHHHHH T ss_pred EECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEE----CC--CEEEEEECCCCCCCCCEECCCCCCCHHHHHH T ss_conf 97893210463131265554542244112333233211142----48--4589970375788861341341322123355 No 27 >>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} (A:1-54,A:143-255) Probab=91.50 E-value=0.47 Score=24.83 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=47.2 Q ss_pred EECC-CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE---CCCCCCEEHHHHHHHHHHH Q ss_conf 7617-94079998758787863213267310899826899999799988998999970---4555200003333345677 Q gi|254780591|r 4 VYLS-NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI---EEDTFILEIDRSKRDSLID 79 (273) Q Consensus 4 ~~L~-~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~---~~~~~~~~~~~~~~~~~~~ 79 (273) +=+| +++.|.|.||.|.+.|+.++..|++.+.+-...-..- -.|. .+++.|. ++.-|-+..+........+ T Consensus 50 ~D~S~~~a~l~i~GP~A~~vL~~l~~~~~~~~~~f~~~~~~~--i~g~---~v~i~R~~~tGE~G~Ei~~p~~~~~~l~~ 124 (167) T 1yx2_A 50 FDVSHQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEAD--ISGR---KALISRTGYTGEDGYEIYCRSDDAXHIWK 124 (167) T ss_dssp EECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEE--ETTE---EEEEESCCSSSSSEEEEEEEGGGHHHHHH T ss_pred EECCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEEE--ECCE---EEEEEECCCCCCCEEEEECCHHHHHHHHH T ss_conf 978970333210241444441013553112346632014688--8890---89998267578771685042778999999 Q ss_pred HH Q ss_conf 76 Q gi|254780591|r 80 KL 81 (273) Q Consensus 80 ~~ 81 (273) .+ T Consensus 125 ~L 126 (167) T 1yx2_A 125 KI 126 (167) T ss_dssp HH T ss_pred HH T ss_conf 99 No 28 >>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} (A:1-54,A:150-279) Probab=91.25 E-value=0.4 Score=25.21 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=44.5 Q ss_pred EECC-CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE---CCCCCCEEHH Q ss_conf 7617-94079998758787863213267310899826899999799988998999970---4555200003 Q gi|254780591|r 4 VYLS-NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI---EEDTFILEID 70 (273) Q Consensus 4 ~~L~-~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~---~~~~~~~~~~ 70 (273) +=+| +++.|.|.||.|.+.|+.++..|++.++-..+...-+ .| .++++.|. ++.-|-+..+ T Consensus 50 ~D~S~~~a~l~iqGP~A~~vL~~l~~~dl~~l~~~~~~~~~i---~g---~~v~i~R~~~tGE~G~Ei~~p 114 (184) T 1v5v_A 50 FDVSHDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVEL---DG---IKMLLSRSGYTGENGFEVYIE 114 (184) T ss_dssp EECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEE---TT---EEEEEECCCSSSSCEEEEEEE T ss_pred EECCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEEC---CC---CCCEEEECCCCCCCEEEEEEE T ss_conf 978983222133211220001000000022343211015562---67---763044315566742999970 No 29 >>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:559-631,A:725-846) Probab=90.68 E-value=0.95 Score=23.04 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=40.5 Q ss_pred EECC-CCEEEEEECCCHHHHHHCCCCC---CHHHCCCCCEEEEEEECCCCCEEEEEEEEEE---CCCCCCEEHHHHHHHH Q ss_conf 7617-9407999875878786321326---7310899826899999799988998999970---4555200003333345 Q gi|254780591|r 4 VYLS-NQSFIKVCGKSAIPFLQAIITA---DVLTLPYKIARGSAILTPQGKILLYFLISKI---EEDTFILEIDRSKRDS 76 (273) Q Consensus 4 ~~L~-~~~~i~i~G~DA~~fL~~l~t~---di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~---~~~~~~~~~~~~~~~~ 76 (273) +=+| ++++|.|.||.|.+.|+.++.. ++..++..++....+ ..|. +++|.|. ++.-|-+..+...... T Consensus 69 ~D~S~~~~~l~i~GP~A~~iL~~l~~~~~~~~~~l~~~~~~~~~i--~~g~---~v~i~R~~~tGE~G~Ei~~p~~~~~~ 143 (195) T 2gag_A 69 LDATTQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVL--DSGI---EARISRISFSGELAFEIAVPAWHGLR 143 (195) T ss_dssp EECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEEC--TTSC---EEEEECCCSSSSCEEEEEEEGGGHHH T ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEE--CCCC---EEEEEEECCCCCCEEEEEECHHHHHH T ss_conf 853642232025567799999974045666500032011158997--4872---26898604579976999976999999 Q ss_pred HHH Q ss_conf 677 Q gi|254780591|r 77 LID 79 (273) Q Consensus 77 ~~~ 79 (273) ... T Consensus 144 l~~ 146 (195) T 2gag_A 144 VWE 146 (195) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 30 >>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* (A:1-54,A:149-252) Probab=86.61 E-value=1.9 Score=21.28 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=46.8 Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE---CCCCCCEEHHHHHHHHHHHH Q ss_conf 94079998758787863213267310899826899999799988998999970---45552000033333456777 Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI---EEDTFILEIDRSKRDSLIDK 80 (273) Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~---~~~~~~~~~~~~~~~~~~~~ 80 (273) +.++|.|.||.|.+.|+.++..|++.++...++.+-+.. ..+++|.|. +|.-|-+..+........+. T Consensus 54 S~a~l~iqGP~A~~vL~~l~~~~~~~~~~~~~~~~~i~g-----~~~v~i~R~~~tGE~G~Ei~~~~~~~~~l~~~ 124 (158) T 1wsr_A 54 SNALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFG-----VSGCRVTRCGYTGEDGVEISVPVAGAVHLATA 124 (158) T ss_dssp TCEEEEEESTTHHHHHHTTCSSCGGGCCTTBEEEEEETT-----EEEEEEESCCSSSSSEEEEEECHHHHHHHHHH T ss_pred CCEEEEECCHHHHHHHHHHCCCHHHCCCCCHHHEEECCC-----CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHH T ss_conf 930576300344566765244311025310000010034-----56579997413333443333552000000000 No 31 >>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} (A:1-37,A:126-198) Probab=78.47 E-value=4 Score=19.38 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=44.9 Q ss_pred EEECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEEC--CCCCCEEHHHHHHHHHHHH Q ss_conf 17617940799987587878632132673108998268999997999889989999704--5552000033333456777 Q gi|254780591|r 3 SVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIE--EDTFILEIDRSKRDSLIDK 80 (273) Q Consensus 3 ~~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~--~~~~~~~~~~~~~~~~~~~ 80 (273) -+.|++..+|-|.|++|.+.|+.+++. ++++.. ... -.++.++.|+. .+.|+++............ T Consensus 33 ~~~~~e~VlLGvAG~qAraaL~~~F~~----LPda~~--~Vv------~~~~~TLLrl~~p~eRFLLI~~~a~A~~L~~k 100 (110) T 1vly_A 33 LXTLDERVLLGVAGFQARAALANLFSE----LPSKEK--QVV------KEGATTLLWFEHPAERFLIVTDEATANXLTDK 100 (110) T ss_dssp EEECTSSEEEEEESTTHHHHHHTTSSC----CCBTTB--CEE------EETTEEEEEECSSSCEEEEEECHHHHHHHHHH T ss_pred EEECCCEEEEEEECCCHHHHHHHHCCC----CCCCCC--EEE------ECCCEEEEECCCCCCCEEEECCHHHHHHHHHH T ss_conf 986684479996175279999762434----554455--155------23853898527887633640788999999875 Q ss_pred HHH Q ss_conf 643 Q gi|254780591|r 81 LLF 83 (273) Q Consensus 81 ~~~ 83 (273) +.. T Consensus 101 L~~ 103 (110) T 1vly_A 101 LRG 103 (110) T ss_dssp HBT T ss_pred HHC T ss_conf 420 No 32 >>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} (A:111-147,A:423-520) Probab=28.26 E-value=32 Score=14.09 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=41.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEE---EC-CEEEEEEEHH Q ss_conf 47521331013210012444347887401345667898872467796799983---47-8336899813 Q gi|254780591|r 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVV---VG-KKALAIARID 245 (273) Q Consensus 181 ~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~---~~-~~gla~i~~~ 245 (273) .-..|+|+.-..++...+...+.+-....-+.+.++...+...-..-|.||.. +. -..+.|.|+. T Consensus 66 ~FdG~LG~G~~e~M~~lG~DVW~L~~~R~MDAPaPGdWTlvf~Rd~~G~VtG~tiGCWLAR~i~y~r~~ 134 (135) T 1ei5_A 66 AFEGFLGKSDMYPLYSVGSDVWLLPVQRSMDAPSPGEWKLVFRRDDKGEITGLSVGCWLARGVEYRRVQ 134 (135) T ss_dssp EEEETTEECCCEECEEEETTEEEEEECCCSSSSCCEEEEEEEEECTTSCEEEEEEEETTEEEEEEEECC T ss_pred EEECCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEECC T ss_conf 861566777630015357853874046433567788758999988999889999646635126899548 No 33 >>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str} (A:1-43,A:144-241) Probab=24.31 E-value=41 Score=13.50 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=20.1 Q ss_pred CCCHHHCCCCCEEEEEEECCCCCEEE Q ss_conf 26731089982689999979998899 Q gi|254780591|r 28 TADVLTLPYKIARGSAILTPQGKILL 53 (273) Q Consensus 28 t~di~~l~~g~~~yt~~ln~~G~i~~ 53 (273) .+-+.++..|..-|..++|.+|.|+. T Consensus 48 ~~~L~~i~~g~~Gy~fIiD~dG~IIa 73 (141) T 3c8c_A 48 AELVNEVKLFDAGYVFIVSEDGTTIA 73 (141) T ss_dssp HHHHTCSCCTTSEEEEEEETTSBEEE T ss_pred CCCCCCCCCCCCEEEEEEECCCCEEE T ss_conf 01121234576449999958995996 No 34 >>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} (A:254-327) Probab=22.15 E-value=45 Score=13.25 Aligned_cols=52 Identities=12% Similarity=-0.109 Sum_probs=37.0 Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEE Q ss_conf 761794079998758787863213267310899826899999799988998999 Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLI 57 (273) Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i 57 (273) ..|+++-.+.++-+++.+|+|++--.--.. +-......+.+++|+++.-..+ T Consensus 6 ~al~~lP~v~L~~~~a~r~~~Gq~i~~~~~--~~~~~vrvy~~~~~~flGig~~ 57 (74) T 1k8w_A 6 SPASDYPVVNLPLTSSVYFKNGNPVRTSGA--PLEGLVRVTEGENGKFIGMGEI 57 (74) T ss_dssp GGGTTSCEEEECHHHHHHHTTTCCBCCSSC--CSSSEEEEEETTTTEEEEEEEE T ss_pred HHHCCCCEEECCHHHHHHHHCCCEEECCCC--CCCCCEEEEECCCCEEEEEEEE T ss_conf 996579889809999999988098866889--9888199999989989999998 Done!