HHsearch results for GI: 254780591 and protein with PDBid: 1v5v_A
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=5.2e-42 Score=263.02 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=196.8
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+|+||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++..+........+...
T Consensus 50 ~D~S~~~ki~I~G~Da~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 129 (401)
T 1v5v_A 50 FDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTY 129 (401)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCHHHHHHHHHHHH
T ss_conf 97898489999879999999875255777688984899989879998899899997313110102460244443344332
Q ss_pred ------HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC------------------------CCCCCCCCHHHHHHC-
Q ss_conf ------2100012235688436999971854322211123------------------------456644410122210-
Q gi|254780591|r 84 ------YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID------------------------ERFSIADVLLHRTWG- 132 (273)
Q Consensus 84 ------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~- 132 (273)
......+.+.+.+.++..+.++||++........ .+....++..+.++.
T Consensus 130 ~~~~~~~~~~~~v~i~d~t~~~~~l~vqGP~s~~~l~~l~~~~~~~~~~~~~~~~~~~g~~v~~~R~g~tGe~G~Ei~~~ 209 (401)
T 1v5v_A 130 LKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIE 209 (401)
T ss_dssp HHHHHHTTSCCCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEE
T ss_pred HHHHHHCCCCCCEEEEECCCCCEEEEECCCCCHHCCCHHCCCCHHCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEE
T ss_conf 23322114678608997546715522037742100100000200002211023442275269999504678844999985
Q ss_pred ------------------------------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCCCCCE
Q ss_conf ------------------------------135555796788888875201334565432212------33100111220
Q gi|254780591|r 133 ------------------------------HNEKIASDIKTYHELRINHGIVDPNTDFLPSTI------FPHDALMDLLN 176 (273)
Q Consensus 133 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 176 (273)
.......+..+++..+.+.+.+.+..+...... ...+....+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~lw~~L~~aG~~~gl~p~G~~A~~~lRiE~G~~~~g~D~~~~~~~~~~~~~~tP~EagL~~ 289 (401)
T 1v5v_A 210 DANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEF 289 (401)
T ss_dssp CCCTTCSSGGGCCCCHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGG
T ss_pred CCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHH
T ss_conf 64333201220245155999999999727220988756778889888608644343355211344466766856715034
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCC
Q ss_conf 133147521331013210012444347887401345667898872467796799983478------33689981310366
Q gi|254780591|r 177 GISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHA 250 (273)
Q Consensus 177 ~~~~~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~ 250 (273)
.++++|+ |+|||++++++..+..++++++.......++.|++|+.+|+.||.|||+++| +||||++.++...+
T Consensus 290 ~v~~~K~-fiGkeal~~~~~~g~~~~lv~l~~~~~~~p~~g~~v~~~g~~VG~vTS~~~sp~l~~~Iala~v~~~~~~~g 368 (401)
T 1v5v_A 290 AIYWDKD-FIGKDALLKQKERGVGRKLVHFKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPG 368 (401)
T ss_dssp GCCTTSC-CTTHHHHHHHHHHCCCEEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTT
T ss_pred HHCCCCC-CCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEECCEEECHHCCCEEEEEEECHHHCCCC
T ss_conf 4215778-776589998875298714899997678789999979779928989221768520592799999887775999
Q ss_pred CCCCCEEEECCEEEEEECCCCCC
Q ss_conf 56786488688899997488769
Q gi|254780591|r 251 IKKGMALTVHGVRVKASFPHWYK 273 (273)
Q Consensus 251 ~~~~~~l~~~~~~~~i~~P~w~~ 273 (273)
....+.+.++..+++|.++|||.
T Consensus 369 ~~~~v~~~g~~~~a~v~~~pf~d 391 (401)
T 1v5v_A 369 IEIEVEIRGQRKKAVTVTPPFYD 391 (401)
T ss_dssp CEEEEEETTEEEEEEEECSCSSC
T ss_pred CEEEEEECCEEEEEEEECCCCCC
T ss_conf 88999999969999997889818