Query gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 273
No_of_seqs 105 out of 5937
Neff 10.5
Searched_HMMs 13730
Date Wed Jun 1 09:47:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780591.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlya2 d.250.1.1 (A:3-243) Hy 100.0 2.8E-31 2E-35 199.0 14.2 195 2-199 18-241 (241)
2 d1pj5a4 d.250.1.1 (A:428-742) 100.0 2.4E-28 1.7E-32 181.9 12.6 191 4-198 76-314 (315)
3 d1wosa2 d.250.1.1 (A:1-278) Gl 99.9 3.9E-27 2.8E-31 174.8 12.2 190 4-197 46-276 (278)
4 d1v5va2 d.250.1.1 (A:3-312) Gl 99.9 1.2E-26 8.5E-31 172.0 14.1 195 4-199 48-309 (310)
5 d1vloa2 d.250.1.1 (A:4-277) Gl 99.9 2.1E-27 1.5E-31 176.4 10.0 191 4-198 44-274 (274)
6 d1v5va1 b.44.2.1 (A:313-401) G 99.1 2.5E-10 1.8E-14 76.7 8.3 73 201-273 1-79 (89)
7 d1wosa1 b.44.2.1 (A:279-361) G 99.0 2E-10 1.5E-14 77.2 6.6 71 201-273 1-79 (83)
8 d1vloa1 b.44.2.1 (A:278-367) G 98.8 4.1E-09 3E-13 69.6 5.9 70 201-273 2-81 (90)
9 d1pj5a1 b.44.2.1 (A:743-830) N 98.7 6.9E-09 5E-13 68.3 5.6 70 201-273 2-80 (88)
10 d1xzpa3 d.250.1.2 (A:1-117) Tr 94.7 0.028 2E-06 29.7 5.3 51 8-60 15-65 (117)
11 d1vlya1 b.44.2.1 (A:244-325) H 45.2 7.4 0.00054 15.6 5.3 65 201-270 2-78 (82)
12 d1ei5a2 b.61.3.1 (A:418-520) D 27.3 14 0.001 13.9 1.8 64 181-244 34-101 (103)
13 d3bzka5 c.55.3.13 (A:325-473) 20.7 20 0.0014 13.1 4.6 31 31-61 7-39 (149)
No 1
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=2.8e-31 Score=199.01 Aligned_cols=195 Identities=19% Similarity=0.229 Sum_probs=133.4
Q ss_pred CEEECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHH
Q ss_conf 41761794079998758787863213267310899826899999799988998999970455520000333334567776
Q gi|254780591|r 2 SSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKL 81 (273)
Q Consensus 2 ~~~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~ 81 (273)
..+-|++|++|+|+|+||.+|||+|+||||++|++|+++||+|||++|||++|++|+|.+++.++++..+... ....++
T Consensus 18 ~l~~L~~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~~~~t~~ln~kGri~~d~~i~~~~~~~~l~~~~~~~~-~~~~~l 96 (241)
T d1vlya2 18 TLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVRE-PQLTEL 96 (241)
T ss_dssp EEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHH-HHHHHH
T ss_pred EEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEHHHHHHH-HHHHHH
T ss_conf 6997798569999888999997377642610169997873310156675999877752233202111134568-888877
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH-----------------HH------------HHC
Q ss_conf 4321000122356884369999718543222111234566444101-----------------22------------210
Q gi|254780591|r 82 LFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLL-----------------HR------------TWG 132 (273)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~~------------~~~ 132 (273)
.......++.+.+ ++.+..+.++||.++................. .. ...
T Consensus 97 ~~~~~~~~v~i~~-~~~~~~~~l~gp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (241)
T d1vlya2 97 KKYAVFSKVTIAP-DDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKL 175 (241)
T ss_dssp HTTCSSSSCEEEE-ECSSEEEEEESTTHHHHHHTTSSCCCBTTBCEEEETTEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEC-CHHHEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 6530252146511-300103431273079999861544344344212110146530367876345307788999999876
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 1355557967888888752013345654322123310011122013314752133101321001244
Q gi|254780591|r 133 HNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNI 199 (273)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~ 199 (273)
.......+...|+..+.+.+.+....... ....+.........+++++||||+|||.++|++++|.
T Consensus 176 ~~~~~~~~~~~~~~lRie~g~p~~~~e~~-~~~~P~E~gLd~~~~Vsf~KGCY~GQE~vAR~~~rG~ 241 (241)
T d1vlya2 176 RGEAELNNSQQWLALNIEAGFPVIDAANS-GQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGA 241 (241)
T ss_dssp BTTBEEECHHHHHHHHHHHTCCCCCGGGT-TSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTS
T ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 42112466668999999809862385577-8774888296002699989999675999999985299
No 2
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=99.95 E-value=2.4e-28 Score=181.89 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=135.1
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+|+||.+|||+++|||++. .+|+++||+|||++|+|++|++|+|++++.|+++.++........+...
T Consensus 76 fD~S~~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~~ 154 (315)
T d1pj5a4 76 YDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAAR 154 (315)
T ss_dssp EECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEECCCHHHHHHHHHCCCCCC-CCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 040020217761366688765442256312-2686557775155567354212220122100122450356666554432
Q ss_pred HHH-----CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC--------------------------CCCHHHHHH-
Q ss_conf 210-----001223568843699997185432221112345664--------------------------441012221-
Q gi|254780591|r 84 YKL-----RSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSI--------------------------ADVLLHRTW- 131 (273)
Q Consensus 84 ~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~- 131 (273)
... ...+.+.+.+..+..++++||+++..+..+...... .++..+.++
T Consensus 155 ~~~~~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~~ 234 (315)
T d1pj5a4 155 HQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYT 234 (315)
T ss_dssp HHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEE
T ss_pred HHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEECC
T ss_conf 22220466665404766856135641385399999970553211234664313699999989999956756777378601
Q ss_pred ----------------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf ----------------0135555796788888875201334565432212331001112201331475213310132100
Q gi|254780591|r 132 ----------------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQ 195 (273)
Q Consensus 132 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~ 195 (273)
......+.+..+++..+.+.+.+.+..+.. ....+....+.+.++++|+||+||+++.+++
T Consensus 235 ~~~~a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~---~~~~P~EagL~~~v~~~K~~FiGkeAl~~~~ 311 (315)
T d1pj5a4 235 SADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMT---TEHDPFEAGLGFAVKMAKESFIGKGALEGRT 311 (315)
T ss_dssp EHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBC---TTSCTTTTTCGGGCCTTSSCCTTHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCCCCC---CCCCHHHCCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 0877778788887530037958647788778999859874465589---9989788696142269999955899999898
Q ss_pred CCC
Q ss_conf 124
Q gi|254780591|r 196 HRN 198 (273)
Q Consensus 196 ~~~ 198 (273)
.+|
T Consensus 312 ~~g 314 (315)
T d1pj5a4 312 EEA 314 (315)
T ss_dssp STT
T ss_pred HHC
T ss_conf 638
No 3
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=99.94 E-value=3.9e-27 Score=174.82 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=140.5
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|++++|+|+||||.+|||+++|||++++++|++.||++||++|+|++|++|+|.+++.|+++.++........+++.
T Consensus 46 ~D~S~~~~i~v~G~Da~~~L~~~~t~di~~l~~g~~~~t~~l~~~G~i~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (278)
T d1wosa2 46 FDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKS 125 (278)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHT
T ss_pred EECCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHEECCCCCCCHHHHHHHHHC
T ss_conf 96787689999757067654210232224567642134430376763377410232220000013553205554443210
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC------------------------CCCCCHHHHHH--------
Q ss_conf 2100012235688436999971854322211123456------------------------64441012221--------
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF------------------------SIADVLLHRTW-------- 131 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-------- 131 (273)
......+.+.+.+.+++.++++||+|+.......... ...++..+.++
T Consensus 126 ~~~~~~v~i~d~t~~~~~l~vqGP~S~~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~tGe~G~ei~~~~~~~~~ 205 (278)
T d1wosa2 126 HSKNFDVEVSNISDTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPK 205 (278)
T ss_dssp TCTTSSCEEEECGGGEEEEEEESTTHHHHHGGGBSSCSTTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHH
T ss_pred CCCCCCCCCEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCHHHHHH
T ss_conf 33334664134034312357324478888775266411111112100013068630475047778886134010456799
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf ---------013555579678888887520133456543221233100111220133147521331013210012
Q gi|254780591|r 132 ---------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHR 197 (273)
Q Consensus 132 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~ 197 (273)
......+.+..+++..+.+.+.+.+..+... ...+......+.++++|+ |+|||++++++.+
T Consensus 206 l~~~l~~~g~~~g~~~~G~~a~~~lRiE~g~~~~g~d~~~---~~~P~E~gl~~~v~~~k~-FiGkeal~~~k~~ 276 (278)
T d1wosa2 206 VWDALMNLLRKIDGRPAGLGARDVCRLEATYLLYGQDMDE---NTNPFEVGLSWVVKLNKD-FVGKEALLKAKEK 276 (278)
T ss_dssp HHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCBTTTBCT---TSCGGGGTCGGGCCTTSC-CTTHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC---CCCHHHCCCCCCCCCCCC-CCHHHHHHHHHHH
T ss_conf 9999873153112566763167899997266657775899---989888897200189988-1719999998742
No 4
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.94 E-value=1.2e-26 Score=172.02 Aligned_cols=195 Identities=15% Similarity=0.140 Sum_probs=137.3
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+||||.+|||+++||||+++++|+++||+|||++|+|++|++|+|.+++.|+++.++........+...
T Consensus 48 fD~S~~~~i~v~G~da~~~L~~l~t~~i~~l~~g~~~yt~~ln~~Ggi~~D~~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 127 (310)
T d1v5va2 48 FDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTY 127 (310)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHCCCEEEECCCCCEEEEEEEEECCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 97888279999837604443210000000122210020221358886564024430321232112220157889987650
Q ss_pred H------HHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC------------------------CCCCCCCCHHHHHHC-
Q ss_conf 2------100012235688436999971854322211123------------------------456644410122210-
Q gi|254780591|r 84 Y------KLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID------------------------ERFSIADVLLHRTWG- 132 (273)
Q Consensus 84 ~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~- 132 (273)
. ....++.+.+.+.++..+++|||+|+....... .+....++..+.++-
T Consensus 128 ~~~~~~~~~~~dv~i~d~t~~~~~l~lqGP~S~~lL~~l~~~~~~~~~~~~~~~~~~~g~~v~i~R~g~tGe~G~Ei~~~ 207 (310)
T d1v5va2 128 LKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIE 207 (310)
T ss_dssp HHHHHHTTSCCCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEE
T ss_pred CHHHHHCCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCEEECCCCCCCCEEEEEEC
T ss_conf 10333214665305896357641110001357788988622010010011210211267653230124578876999953
Q ss_pred ------------------------------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCCCE
Q ss_conf ------------------------------13555579678888887520133456543221------233100111220
Q gi|254780591|r 133 ------------------------------HNEKIASDIKTYHELRINHGIVDPNTDFLPST------IFPHDALMDLLN 176 (273)
Q Consensus 133 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 176 (273)
.....+.+..+++..+.+.+.+.+..+..+.. ....+......+
T Consensus 208 ~~~~~~~~~~~~~~~~~a~~l~~~l~~aG~~~g~~p~G~~A~d~lRiE~G~~~~g~d~~~~~~~~~~~~~~tP~E~gl~~ 287 (310)
T d1v5va2 208 DANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEF 287 (310)
T ss_dssp CCCTTCSSGGGCCCCHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGG
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 65544421112246899999999999747131988825657678999768664564356200244576899867769721
Q ss_pred EEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 13314752133101321001244
Q gi|254780591|r 177 GISLTKGCYIGQEVVSRIQHRNI 199 (273)
Q Consensus 177 ~~~~~k~~f~G~e~~~~~~~~~~ 199 (273)
.++++|+ |+||+++++++.+|+
T Consensus 288 ~v~~~k~-FiGkeal~~~~~~Gv 309 (310)
T d1v5va2 288 AIYWDKD-FIGKDALLKQKERGV 309 (310)
T ss_dssp GCCTTSC-CTTHHHHHHHHHHCC
T ss_pred CCCCCCC-CCCHHHHHHHHHHCC
T ss_conf 1489989-660999999997588
No 5
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=2.1e-27 Score=176.41 Aligned_cols=191 Identities=13% Similarity=0.101 Sum_probs=135.5
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHC-CCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 7617940799987587878632132673108-998268999997999889989999704555200003333345677764
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTL-PYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLL 82 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l-~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (273)
+=+|++++|+|+|+||.+|||+++|||+.++ ++|+++||+|||++|+|++|++|+|.+++.|+++.++........++.
T Consensus 44 ~D~S~~~~i~v~G~Da~~~L~~l~t~di~~~~~~G~~~yt~~ln~~G~i~~D~~v~r~~~~~~~~~~~~~~~~~~~~~l~ 123 (274)
T d1vloa2 44 FDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWIT 123 (274)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred EECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCCEEEECCCCCCCCCCCEECCCHHHHHHHHHHHH
T ss_conf 97898589999476418876455417532244441213642137886189740344457886321021336899999998
Q ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC------------------------CCCCCCCCHHHHH--------
Q ss_conf 32100012235688436999971854322211123------------------------4566444101222--------
Q gi|254780591|r 83 FYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID------------------------ERFSIADVLLHRT-------- 130 (273)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~-------- 130 (273)
.+.....+ ..+.++.+..+.++||+++..+.... .+....+...+.+
T Consensus 124 ~~~~~~~~-~~~~t~~~~~l~vqGP~s~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~tGe~G~Ei~~~~~~~~ 202 (274)
T d1vloa2 124 QHAEPFGI-EITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAA 202 (274)
T ss_dssp HHHGGGTC-EEEECTTEEEEEEESTTHHHHHHTTCCHHHHHHHTTCCSSBEEEETTEEEECCCSSSSCEEEEEEEHHHHH
T ss_pred HHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHH
T ss_conf 73213444-46676406766530476666543000000000001332111103635999804788887157636899999
Q ss_pred -----HCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCCCCCCCCCC
Q ss_conf -----10135555796788888875201334565432212331001112201331--475213310132100124
Q gi|254780591|r 131 -----WGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL--TKGCYIGQEVVSRIQHRN 198 (273)
Q Consensus 131 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~k~~f~G~e~~~~~~~~~ 198 (273)
.........+...++..+.+.+.+.+..+.... ..+.+.. +.+.+++ .|+||+|||++.+++.+|
T Consensus 203 ~l~~~L~~~G~~~~G~~a~~~lRiEaG~~~~g~d~~~~--~~P~E~g-L~~~v~~~~~k~~fiGkeal~~~k~~G 274 (274)
T d1vloa2 203 DFWRALVEAGVKPCGLGARDTLRLEAGMNLYGQEMDET--ISPLAAN-MGWTIAWEPADRDFIGREALEVQREHG 274 (274)
T ss_dssp HHHHHHHHTTCEECCHHHHHHHHHHTTCCCBTTTBCTT--SCGGGTT-CGGGCCCCSTTCCCTTHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC--CCHHHCC-CCCEECCCCCCCCCCCHHHHHHHHHCC
T ss_conf 99999998399855852466789867988766203899--8977769-633037878999945899999999659
No 6
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.07 E-value=2.5e-10 Score=76.71 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 347887401345667898872467796799983478------3368998131036656786488688899997488769
Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273)
++++++....+.+++.|++|+.+|++||.|||+++| +||||+..++...+....+++..+..++++..+|||+
T Consensus 1 rkLvGl~~~~~~i~~~g~~I~~~g~~VG~vTSg~~Sp~l~~~Iala~v~~~~~~~g~~v~v~i~g~~~~a~v~~~PfyD 79 (89)
T d1v5va1 1 RKLVHFKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYD 79 (89)
T ss_dssp EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSC
T ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCCC
T ss_conf 9599999878756899998988999999982576988579549999998889699999999999949989997889948
No 7
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=99.04 E-value=2e-10 Score=77.19 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=54.4
Q ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCCC
Q ss_conf 347887401345667898872467796799983478------3368998131036656786488688--89999748876
Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHWY 272 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w~ 272 (273)
++++++.+..+.+++.+++|+.+|+.||.|||+++| +||||+..++.... ....+..++ .+++++.+|||
T Consensus 1 RrlvGl~i~~~~~~~~g~~I~~~g~~VG~vTSg~~Sp~l~k~Iala~i~~~~~~~~--~~~~~~~~g~~~~a~v~~~PF~ 78 (83)
T d1wosa1 1 RKLVALELSGKRIARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSKSVKIGD--QLGVVFPGGKLVEALVVKKPFY 78 (83)
T ss_dssp EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEETTCCTTC--EEEEEETTTEEEEEEEECSCSC
T ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCEEEEEEECHHHCCCC--EEEEEEECCEEEEEEEECCCCC
T ss_conf 96999998998679999999889999988857609997896389999785556998--0999998996999999889984
Q ss_pred C
Q ss_conf 9
Q gi|254780591|r 273 K 273 (273)
Q Consensus 273 ~ 273 (273)
|
T Consensus 79 ~ 79 (83)
T d1wosa1 79 R 79 (83)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 8
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=98.79 E-value=4.1e-09 Score=69.56 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=52.9
Q ss_pred CEEEEEEECCCCCCCCCCEEE----ECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 347887401345667898872----467796799983478------3368998131036656786488688899997488
Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPIL----TDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPH 270 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~----~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~ 270 (273)
+|++++....+..++.|++|+ .+++.||+|||+++| +||||++.++ +....++++.+..++++..||
T Consensus 2 ~kLVGl~l~~~~~~~~g~~v~~~~~~~~~~iG~VTSg~~Sp~l~k~Iala~v~~~~---g~~~~v~v~g~~~~a~v~~~P 78 (90)
T d1vloa1 2 EKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPV 78 (90)
T ss_dssp CEEEEEEECSSSCCCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTTC---CSEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCC---CCEEEEEECCEEEEEEEECCC
T ss_conf 74899998998778999999731668983998887244998569429999970478---999999999979999997999
Q ss_pred CCC
Q ss_conf 769
Q gi|254780591|r 271 WYK 273 (273)
Q Consensus 271 w~~ 273 (273)
|||
T Consensus 79 F~~ 81 (90)
T d1vloa1 79 FVR 81 (90)
T ss_dssp CEE
T ss_pred CCC
T ss_conf 616
No 9
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=98.73 E-value=6.9e-09 Score=68.27 Aligned_cols=70 Identities=9% Similarity=0.108 Sum_probs=51.4
Q ss_pred CEEEEEEECC-CCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCC
Q ss_conf 3478874013-45667898872467796799983478------3368998131036656786488688--8999974887
Q gi|254780591|r 201 RKRPMIITGT-DDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHW 271 (273)
Q Consensus 201 ~~~~~~~~~~-~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w 271 (273)
+|++++.++. +..+.++++|+.+|+.||.|||+++| +||||+..+. ..+. .+++.+.+ .++++.++||
T Consensus 2 rrLv~l~~d~~~~~~~g~epI~~~g~~VG~vTS~~~Sp~l~k~Iala~v~~~~-~~g~--~~~V~~~g~~~~a~v~~~P~ 78 (88)
T d1pj5a1 2 RRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTV-SVGD--SVDIEYFGRRITATVTEDPL 78 (88)
T ss_dssp EEEEEEEETTSCCCCCSCCEEEETTEEEEECCSEEEETTTTEEEEEEEEETTC-CTTC--EEEEEETTEEEEEEEECSCS
T ss_pred CCEEEEEEECCCCCCCCCCEEEECCEEEEEEECCEECCHHCCCEEEEEEECCC-CCCC--EEEEEECCEEEEEEEECCCC
T ss_conf 74899999789857689985998998999997872972460436999970376-8999--99999999898789980398
Q ss_pred CC
Q ss_conf 69
Q gi|254780591|r 272 YK 273 (273)
Q Consensus 272 ~~ 273 (273)
|-
T Consensus 79 yD 80 (88)
T d1pj5a1 79 YD 80 (88)
T ss_dssp SC
T ss_pred CC
T ss_conf 98
No 10
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.73 E-value=0.028 Score=29.71 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=38.6
Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 94079998758787863213267310899826899999799988998999970
Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60 (273)
Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~ 60 (273)
-.++|||+||+|.+.++.++... .+..+.+..|..+ .++|.++|+.++...
T Consensus 15 aIaVIRiSG~~a~~i~~~~~~~~-~~~~~r~~~~~~i-~~~~~~iD~~lv~~f 65 (117)
T d1xzpa3 15 AIAILRLSGPDSWKIVQKHLRTR-SKIVPRKAIHGWI-HENGEDVDEVVVVFY 65 (117)
T ss_dssp SCEEEEEESSSHHHHHHTTEEES-SCCCBTBCEEEEE-CCSSCCCCEEEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHHCCC-CCCCCCEEEEECC-CCCCCCCCCCEEEEE
T ss_conf 69999999951789999983766-4455505785011-222234676327982
No 11
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.19 E-value=7.4 Score=15.56 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=38.4
Q ss_pred CEEEEEEECC-CCCCCCCCEEE----ECCEEEEEEEEEECC-----EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEEC
Q ss_conf 3478874013-45667898872----467796799983478-----3368998131036656786488688--8999974
Q gi|254780591|r 201 RKRPMIITGT-DDLPPSGSPIL----TDDIEIGTLGVVVGK-----KALAIARIDKVDHAIKKGMALTVHG--VRVKASF 268 (273)
Q Consensus 201 ~~~~~~~~~~-~~~~~~g~~i~----~~g~~VG~vtS~~~~-----~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~ 268 (273)
+|+++..... ...+..|+.|. .+.+.+|.|-+++.. ..+|.+..+.. .+..++.++ ..+++..
T Consensus 2 KRamy~l~g~~~~~p~~G~~le~~~~~~wr~~G~Vv~a~~~~dg~~~~laVL~~d~~-----~~~~~r~~~~~~~L~~~~ 76 (82)
T d1vlya1 2 KRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDME-----PDSIFRVRDDANTLHIEP 76 (82)
T ss_dssp CEEEEEEEECCSSCCCTTCCEEEEETTEEEEECEEEEEEECTTSCEEEEEEEETTCC-----TTCCEESTTCSSCEEEEC
T ss_pred CCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCC-----CCCCEEECCCCCEEEECC
T ss_conf 517999981435799999984860288974343999999989992999999687766-----685278359888758868
Q ss_pred CC
Q ss_conf 88
Q gi|254780591|r 269 PH 270 (273)
Q Consensus 269 P~ 270 (273)
.|
T Consensus 77 LP 78 (82)
T d1vlya1 77 LP 78 (82)
T ss_dssp CS
T ss_pred CC
T ss_conf 98
No 12
>d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Probab=27.29 E-value=14 Score=13.93 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC----EEEEEEEH
Q ss_conf 47521331013210012444347887401345667898872467796799983478----33689981
Q gi|254780591|r 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK----KALAIARI 244 (273)
Q Consensus 181 ~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~----~gla~i~~ 244 (273)
.-..|+||....+++..+...+.+.....-+.+.++...+...-..-|.||..... ..+-|+|+
T Consensus 34 ~FeG~LG~g~~~~m~~lg~DvW~L~~~R~mDApaPGdWtlvf~Rd~~G~Vtg~t~GCWLAR~i~Y~r~ 101 (103)
T d1ei5a2 34 AFEGFLGKSDMYPLYSVGSDVWLLPVQRSMDAPSPGEWKLVFRRDDKGEITGLSVGCWLARGVEYRRV 101 (103)
T ss_dssp EEEETTEECCCEECEEEETTEEEEEECCCSSSSCCEEEEEEEEECTTSCEEEEEEEETTEEEEEEEEC
T ss_pred EEECCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCEEEC
T ss_conf 76510268840432314894699865554799889865999997589958889998987302307852
No 13
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.68 E-value=20 Score=13.07 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHHCCCC--CEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 3108998--268999997999889989999704
Q gi|254780591|r 31 VLTLPYK--IARGSAILTPQGKILLYFLISKIE 61 (273)
Q Consensus 31 i~~l~~g--~~~yt~~ln~~G~i~~D~~i~r~~ 61 (273)
|-.+.|| ..+..+++|++|.+++-.++|...
T Consensus 7 vlg~DPg~r~gck~AvlD~~G~vld~~viyp~~ 39 (149)
T d3bzka5 7 TLGLDPGLRTGVKVAVVDATGKLLDTATVYPHA 39 (149)
T ss_dssp EEEEECCSTTCEEEEEECTTSCEEEEEEECCST
T ss_pred EEEECCCCCCCCEEEEECCCCCEEEEEEEECCC
T ss_conf 888788865661899997999989999984379
Done!