HHsearch alignment for GI: 254780592 and conserved domain: CHL00033

>CHL00033 ycf3 photosystem I assembly protein Ycf3.
Probab=99.06  E-value=6.1e-10  Score=78.58  Aligned_cols=120  Identities=13%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             99999999998741001244666556632752---100135555321000001125887642211000023356699999
Q gi|254780592|r   71 MIGIVYADVLRRVGRTAQALAVMRQVAILYPE---DQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV  147 (271)
Q Consensus        71 ~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~  147 (271)
T Consensus        32 f~yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pqA~NNlGvI  111 (165)
T CHL00033         32 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  111 (165)
T ss_pred             HHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99998151010135389999999986234568512668998999999985888899999999998599968999789999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHH
Q ss_conf             9974211111000000000000000124577765433223554359999999538985-47888
Q gi|254780592|r  148 LAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD-SRIRQ  210 (271)
Q Consensus       148 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~  210 (271)
T Consensus       112 yh~qG~~a~~~~~~--------------------~~~~~~fd~aa~~w~~ai~lap~ny~eaqn  155 (165)
T CHL00033        112 CHYRGEQAIEQGDS--------------------EIAEAWFDQAAEYWKQAIALAPGNYIEAQN  155 (165)
T ss_pred             HHHHHHHHHHCCCH--------------------HHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             99987999984586--------------------789999999999999987038997099999