HHsearch alignment for GI: 254780592 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=99.11 E-value=2.4e-09 Score=74.91 Aligned_cols=178 Identities=13% Similarity=-0.009 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999999999957578799999999998741001244666556632752100135555321000001125887642211
Q gi|254780592|r 53 LEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR 132 (271)
Q Consensus 53 ~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 132 (271)
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 99860145666349675899989999998602205799986667104775107776044023444751555999999984
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------
Q ss_conf 0000233566999999974211111000-000000000000124577765433223554359999999538985------
Q gi|254780592|r 133 PDIPDWQLISAKGSVLAQMGKHSEALIE-YERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD------ 205 (271)
Q Consensus 133 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------ 205 (271)
T Consensus 162 ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~--iV--~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 162 DDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWN--IV--EFYLGKISE-ETLMERLKADATDNTSLAEH 235 (297)
T ss_pred CCCCCHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCCHHHHHHH--HH--HHHHHHCCH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 498980789999987-6107868999999999870567655187--99--999704039-99999998631212899999
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf -4788899999998699899999999862917
Q gi|254780592|r 206 -SRIRQNLALVVGLQGRMKEAYSIASQELSPE 236 (271)
Q Consensus 206 -~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~ 236 (271)
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999861311788999999999887