HHsearch alignment for GI: 254780592 and conserved domain: COG5107

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification].
Probab=95.48  E-value=0.15  Score=27.15  Aligned_cols=174  Identities=9%  Similarity=0.033  Sum_probs=99.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----
Q ss_conf             999999957578799999999998741001244666556632752100135555321000001125887642211-----
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR-----  132 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-----  132 (271)
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~  366 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK  366 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC---HHEEHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999888885512999887899986234888899999824668972---32009987753066888763288899999999


Q ss_pred             -------------HHCHH-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHH
Q ss_conf             -------------00002-335-----------6699999997421111100000000000000012457776-543322
Q gi|254780592|r  133 -------------PDIPD-WQL-----------ISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM-SYLLMG  186 (271)
Q Consensus       133 -------------~~p~~-~~~-----------~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~~~~g  186 (271)
T Consensus       367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~  446 (660)
T COG5107         367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG  446 (660)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCC
T ss_conf             86220031015668710148999998753236788999999987558999999999712577775234317788988618


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             355435999999953898547888999999986998999999998629
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
T Consensus       447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             953178999877773799538999999999870847778999987688