HHsearch alignment for GI: 254780592 and conserved domain: COG5107
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification].
Probab=95.48 E-value=0.15 Score=27.15 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=99.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----
Q ss_conf 999999957578799999999998741001244666556632752100135555321000001125887642211-----
Q gi|254780592|r 58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR----- 132 (271)
Q Consensus 58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~----- 132 (271)
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC---HHEEHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999888885512999887899986234888899999824668972---32009987753066888763288899999999
Q ss_pred -------------HHCHH-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHH
Q ss_conf -------------00002-335-----------6699999997421111100000000000000012457776-543322
Q gi|254780592|r 133 -------------PDIPD-WQL-----------ISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM-SYLLMG 186 (271)
Q Consensus 133 -------------~~p~~-~~~-----------~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~~~~g 186 (271)
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCC
T ss_conf 86220031015668710148999998753236788999999987558999999999712577775234317788988618
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 355435999999953898547888999999986998999999998629
Q gi|254780592|r 187 DLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS 234 (271)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~ 234 (271)
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 953178999877773799538999999999870847778999987688