HHsearch alignment for GI: 254780592 and conserved domain: PRK06330
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=97.66 E-value=0.0037 Score=37.03 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=101.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999957578799999999998741001244666556632752100135555321000001125887642211000023
Q gi|254780592|r 59 IGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDW 138 (271)
Q Consensus 59 ~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 138 (271)
T Consensus 107 ~~~iL-~y~e~~~AL~~la~~y~~~~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~~rf~~~k 184 (906)
T PRK06330 107 CDKIL-LYGENKLALYTLAEAYAKLKKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAIYRFIKKK 184 (906)
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999-85310789999999999835774389999999971344668999998888740-26889999999999998775
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 3566999999974-----2111110000000000--00000124577765433223554359999999538985478889
Q gi|254780592|r 139 QLISAKGSVLAQM-----GKHSEALIEYERALEL--SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQN 211 (271)
Q Consensus 139 ~~~~~lg~~~~~~-----~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 211 (271)
T Consensus 185 ~-~~~~~eiw~klv~~~~dd~~~f~~i~~~~~~~~~~~~~~~l~~~i~~~y~~~e~~~~~i~~lK~iL~~d~~~~kaR~~ 263 (906)
T PRK06330 185 Q-YVGIEEIWSKLVHNNSDDFDFFLRIERKILGHREFTRLVGLLYDIVEPYKQLENWDEVIYILKKILEHDNKSNKAREE 263 (906)
T ss_pred H-HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 4-122889999998608631789999999998764347036641676788761276889999999997335010688999
Q ss_pred HHHHHHHC
Q ss_conf 99999986
Q gi|254780592|r 212 LALVVGLQ 219 (271)
Q Consensus 212 La~~~~~~ 219 (271)
T Consensus 264 li~~~k~k 271 (906)
T PRK06330 264 LIRFYKEK 271 (906)
T ss_pred HHHHHHHH
T ss_conf 99999986