HHsearch alignment for GI: 254780592 and conserved domain: PRK06330

>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=97.66  E-value=0.0037  Score=37.03  Aligned_cols=158  Identities=9%  Similarity=0.061  Sum_probs=101.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHH
Q ss_conf             99999957578799999999998741001244666556632752100135555321000001125887642211000023
Q gi|254780592|r   59 IGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDW  138 (271)
Q Consensus        59 ~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  138 (271)
T Consensus       107 ~~~iL-~y~e~~~AL~~la~~y~~~~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~~rf~~~k  184 (906)
T PRK06330        107 CDKIL-LYGENKLALYTLAEAYAKLKKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAIYRFIKKK  184 (906)
T ss_pred             HHHHH-HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHH
T ss_conf             99999-85310789999999999835774389999999971344668999998888740-26889999999999998775


Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             3566999999974-----2111110000000000--00000124577765433223554359999999538985478889
Q gi|254780592|r  139 QLISAKGSVLAQM-----GKHSEALIEYERALEL--SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQN  211 (271)
Q Consensus       139 ~~~~~lg~~~~~~-----~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  211 (271)
T Consensus       185 ~-~~~~~eiw~klv~~~~dd~~~f~~i~~~~~~~~~~~~~~~l~~~i~~~y~~~e~~~~~i~~lK~iL~~d~~~~kaR~~  263 (906)
T PRK06330        185 Q-YVGIEEIWSKLVHNNSDDFDFFLRIERKILGHREFTRLVGLLYDIVEPYKQLENWDEVIYILKKILEHDNKSNKAREE  263 (906)
T ss_pred             H-HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             4-122889999998608631789999999998764347036641676788761276889999999997335010688999


Q ss_pred             HHHHHHHC
Q ss_conf             99999986
Q gi|254780592|r  212 LALVVGLQ  219 (271)
Q Consensus       212 La~~~~~~  219 (271)
T Consensus       264 li~~~k~k  271 (906)
T PRK06330        264 LIRFYKEK  271 (906)
T ss_pred             HHHHHHHH
T ss_conf             99999986