HHsearch alignment for GI: 254780592 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=97.77 E-value=0.0012 Score=40.09 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 00001245777654332235543599999995389854788899999998699899999999862917286659999999
Q gi|254780592|r 169 PNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSI 248 (271)
Q Consensus 169 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~ 248 (271)
T Consensus 409 ~~~~riyeAlAl~al~~~~~~~A~~~L~~~~~~~-~Svl~YILlgK~aEl~G~~~~A~e~Y~~Af~~~~s~~tl~l~enL 487 (512)
T PRK10153 409 NVLSRIYEALAVQALVKGDTDEAYQALNKAIELE-MSWLNYVLLGKVAELKGDNRLAADAYSTAFNLRPGENTYYLIENL 487 (512)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 8872889999999984799999999998675645-569999999999996499668899999998038838999998625
Q ss_pred HH
Q ss_conf 98
Q gi|254780592|r 249 LS 250 (271)
Q Consensus 249 l~ 250 (271)
T Consensus 488 vF 489 (512)
T PRK10153 488 VF 489 (512)
T ss_pred CC
T ss_conf 30