HHsearch alignment for GI: 254780592 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=97.59 E-value=0.0047 Score=36.37 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 111000000000000000124577765433----22----35543599999995--389854788899999998699899
Q gi|254780592|r 155 SEALIEYERALELSPNESSIVSNIAMSYLL----MG----DLKTAEEKLRFASQ--MIGADSRIRQNLALVVGLQGRMKE 224 (271)
Q Consensus 155 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g----~~~~A~~~~~~al~--~~p~~~~~~~~La~~~~~~g~~~e 224 (271)
T Consensus 351 ~~~idLl~~~~~~ePdn~Yv~Ae~yi~~~~~~~l~~~~~~~l~~Ln~~l~~~~~~~~~~~~~riyeAlAl~al~~~~~~~ 430 (512)
T PRK10153 351 NKGSDLLEEILKSEPDFTYALAEKALADHVRQSLQPLDEKQLAALNTELDNIVALPGVNVLSRIYEALAVQALVKGDTDE 430 (512)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999729983899999999999998549888999999999999987332468872889999999984799999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986291728665999999998321299999999
Q gi|254780592|r 225 AYSIASQELSPEEATRNIKYIKSILSQRDPWKKIAKAR 262 (271)
Q Consensus 225 A~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a~a~ 262 (271)
T Consensus 431 A~~~L~~~~~~~~Svl~YILlgK~aEl~G~~~~A~e~Y 468 (512)
T PRK10153 431 AYQALNKAIELEMSWLNYVLLGKVAELKGDNRLAADAY 468 (512)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999867564556999999999999649966889999