HHsearch alignment for GI: 254780592 and conserved domain: TIGR00540
>TIGR00540 hemY_coli hemY protein; InterPro: IPR005254 This is a family of uncharacterised proteins encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (Escherichia coli and Haemophilus influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. .
Probab=92.69 E-value=0.59 Score=23.53 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32235543599999995389854--78889999999869989999999986--291728665999999998321299999
Q gi|254780592|r 184 LMGDLKTAEEKLRFASQMIGADS--RIRQNLALVVGLQGRMKEAYSIASQE--LSPEEATRNIKYIKSILSQRDPWKKIA 259 (271)
Q Consensus 184 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~La~~~~~~g~~~eA~~~~~~~--L~~~~~~~~~~~l~~~l~~~~~~~~~a 259 (271)
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 390 (409)
T TIGR00540 311 KPEDPEKLLKLLEKRAKNVGDKPKCLLWRALGYLLVKNGEWIEAADAFKNVAALPERPDAYDLAWLADALDRLGDPELAE 390 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 66765789999998874035203677777766677621204578888776664010010346889999987405656888
Q ss_pred HHH
Q ss_conf 999
Q gi|254780592|r 260 KAR 262 (271)
Q Consensus 260 ~a~ 262 (271)
T Consensus 391 ~~~ 393 (409)
T TIGR00540 391 AVR 393 (409)
T ss_pred HHH
T ss_conf 887