HHsearch alignment for GI: 254780592 and conserved domain: TIGR00540

>TIGR00540 hemY_coli hemY protein; InterPro: IPR005254 This is a family of uncharacterised proteins encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (Escherichia coli and Haemophilus influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. .
Probab=92.69  E-value=0.59  Score=23.53  Aligned_cols=79  Identities=13%  Similarity=0.113  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32235543599999995389854--78889999999869989999999986--291728665999999998321299999
Q gi|254780592|r  184 LMGDLKTAEEKLRFASQMIGADS--RIRQNLALVVGLQGRMKEAYSIASQE--LSPEEATRNIKYIKSILSQRDPWKKIA  259 (271)
Q Consensus       184 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~La~~~~~~g~~~eA~~~~~~~--L~~~~~~~~~~~l~~~l~~~~~~~~~a  259 (271)
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  390 (409)
T TIGR00540       311 KPEDPEKLLKLLEKRAKNVGDKPKCLLWRALGYLLVKNGEWIEAADAFKNVAALPERPDAYDLAWLADALDRLGDPELAE  390 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             66765789999998874035203677777766677621204578888776664010010346889999987405656888


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780592|r  260 KAR  262 (271)
Q Consensus       260 ~a~  262 (271)
T Consensus       391 ~~~  393 (409)
T TIGR00540       391 AVR  393 (409)
T ss_pred             HHH
T ss_conf             887