HHsearch alignment for GI: 254780592 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.93 E-value=3.2e-24 Score=166.10 Aligned_cols=226 Identities=20% Similarity=0.210 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHCCCC-CCCCHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 9999999985403685-433117-99999984201999999999999957578799999999998741001244666556
Q gi|254780592|r 19 VFLIPLLLFSSCHLNP-RISIPD-PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQV 96 (271)
Q Consensus 19 ~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~a 96 (271)
T Consensus 1 ~~l~~~~~l~GC~~~~P~~q~~~~~~~~~~~~~~-----------------~~a~~r~qLal~Yl~~G~~~~Ak~~l~~A 63 (247)
T TIGR02521 1 LALVLLLALTGCVTTPPTVQEQEVPESSRTTDRE-----------------KAAKIRVQLALGYLEQGDLEKAKENLDKA 63 (247)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 3887846785157887897787888875510279-----------------99999999999998607878999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCC--CCH
Q ss_conf 6327521001355553210000--0112588764221100002335669999999742--111110000000000--000
Q gi|254780592|r 97 AILYPEDQEVLAAYGKSLANAG--YLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG--KHSEALIEYERALEL--SPN 170 (271)
Q Consensus 97 l~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~--~p~ 170 (271)
T Consensus 64 L~~dp~~~~a~~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~ 143 (247)
T TIGR02521 64 LEHDPDDYDAYLALALYYQQLGRPELEKAEQSFRKALTLKPNNGDVLNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQ 143 (247)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 87376661289999999987179955789999999862489985232014577640489706899999999986688973
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---CCCCHHHHHHHH
Q ss_conf 00124577765433223554359999999538985478889999999869989999999986291---728665999999
Q gi|254780592|r 171 ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSP---EEATRNIKYIKS 247 (271)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~---~~~~~~~~~l~~ 247 (271)
T Consensus 144 ~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~~~~A~~~l~ry~~~~G~~~~~a~sL~Lg~ 223 (247)
T TIGR02521 144 PARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLELAELYYERGQYAQARALLERYQQTVGVKNQTAESLWLGI 223 (247)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 30245549999986178688999999999858788855799999987507728999999999987367888873478999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99832129999999
Q gi|254780592|r 248 ILSQRDPWKKIAKA 261 (271)
Q Consensus 248 ~l~~~~~~~~~a~a 261 (271)
T Consensus 224 riA~~~Gd~~~~~~ 237 (247)
T TIGR02521 224 RIARALGDVAAAKR 237 (247)
T ss_pred HHHHHHCCHHHHHH
T ss_conf 99998442999999