HHsearch alignment for GI: 254780592 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.96  E-value=8.7e-09  Score=71.52  Aligned_cols=104  Identities=12%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf             356699999997421111100000000000000---0124577765433223554359999999538985---4788899
Q gi|254780592|r  139 QLISAKGSVLAQMGKHSEALIEYERALELSPNE---SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNL  212 (271)
Q Consensus       139 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~L  212 (271)
T Consensus         3 ~~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKl   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             67899999998538878999999999886879876710547999999997339999999999986458998606899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             999998699899999999862917286659
Q gi|254780592|r  213 ALVVGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       213 a~~~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
T Consensus        83 g~~~~~~g~~~~A~~~l~~V~~~YP~s~aA  112 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             999987289889999999998566998788