HHsearch alignment for GI: 254780592 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.96 E-value=8.7e-09 Score=71.52 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf 356699999997421111100000000000000---0124577765433223554359999999538985---4788899
Q gi|254780592|r 139 QLISAKGSVLAQMGKHSEALIEYERALELSPNE---SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNL 212 (271)
Q Consensus 139 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~L 212 (271)
T Consensus 3 ~~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKl 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 67899999998538878999999999886879876710547999999997339999999999986458998606899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 999998699899999999862917286659
Q gi|254780592|r 213 ALVVGLQGRMKEAYSIASQELSPEEATRNI 242 (271)
Q Consensus 213 a~~~~~~g~~~eA~~~~~~~L~~~~~~~~~ 242 (271)
T Consensus 83 g~~~~~~g~~~~A~~~l~~V~~~YP~s~aA 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999987289889999999998566998788