HHsearch alignment for GI: 254780592 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.88 E-value=1.4e-08 Score=70.29 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q ss_conf 1799999984201999999999999957578---7999999999987410012446665566327521---001355553
Q gi|254780592|r 39 PDPESLENMNHEQLLEVTSTIGLQYQSHTKN---KMIGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGK 112 (271)
Q Consensus 39 ~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~---~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~ 112 (271)
T Consensus 5 ~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 89999999853887899999999988687987671054799999999733999999999998645899860689999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 21000001125887642211000023356
Q gi|254780592|r 113 SLANAGYLDEGLDAINRAQRPDIPDWQLI 141 (271)
Q Consensus 113 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 141 (271)
T Consensus 85 ~~~~~g~~~~A~~~l~~V~~~YP~s~aA~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99872898899999999985669987889