HHsearch alignment for GI: 254780592 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.88  E-value=1.4e-08  Score=70.29  Aligned_cols=103  Identities=13%  Similarity=0.084  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q ss_conf             1799999984201999999999999957578---7999999999987410012446665566327521---001355553
Q gi|254780592|r   39 PDPESLENMNHEQLLEVTSTIGLQYQSHTKN---KMIGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGK  112 (271)
Q Consensus        39 ~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~---~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~  112 (271)
T Consensus         5 ~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             89999999853887899999999988687987671054799999999733999999999998645899860689999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             21000001125887642211000023356
Q gi|254780592|r  113 SLANAGYLDEGLDAINRAQRPDIPDWQLI  141 (271)
Q Consensus       113 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  141 (271)
T Consensus        85 ~~~~~g~~~~A~~~l~~V~~~YP~s~aA~  113 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99872898899999999985669987889