HHsearch alignment for GI: 254780592 and conserved domain: TIGR02917
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.93 E-value=4.9e-24 Score=164.98 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=140.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf 99999842019999999999999575787999999999987410012446665566327521001355553210000011
Q gi|254780592|r 42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD 121 (271)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 121 (271)
T Consensus 389 lG~~~L~~g~~~~A~~yl~ka~~~~P~~a~~~t~lG~~~L~~Gd~~~Ai~dL~~A~~l~~~~~~a~~~L~~~yL~~~~~d 468 (924)
T TIGR02917 389 LGEAYLAKGDFEKAAEYLAKASELDPENAAARTKLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGEFD 468 (924)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999863896789999987610589808899999988620688347899999999727775347899999887420489
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 25887642211000023356699999997421111100000000000000012457776543322355435999999953
Q gi|254780592|r 122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM 201 (271)
Q Consensus 122 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 201 (271)
T Consensus 469 KAla~~~~l~~~~pd~p~~~nl~G~i~l~~~~~~kA~~~f~~AL~i~p~~~~A~~nLA~~d~~~~~~~~A~~r~~~~l~~ 548 (924)
T TIGR02917 469 KALAAAKKLEKKQPDNPSLHNLLGAIYLGKKDLAKAREAFEKALKIEPDFFPAAANLARIDLQEGNPDDAKQRFEKVLTI 548 (924)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999975288982689999999985178789999999875318778478999999887428968999999999875
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8985478889999999869989999999986291728665--9999999983212999999997
Q gi|254780592|r 202 IGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRN--IKYIKSILSQRDPWKKIAKARS 263 (271)
Q Consensus 202 ~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~--~~~l~~~l~~~~~~~~~a~a~~ 263 (271)
T Consensus 549 ~P~~~~a~~~La~L~~~~g~~~~~~~~l~~A~~~~~~~~~p~l~L~~~yl~~~~l~kAl~~l~~ 612 (924)
T TIGR02917 549 DPKNLRALLALAELAARTGNEEEAVAWLEKAAEKNPKEIEPALALAQYYLSKGELKKALAILNE 612 (924)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7433799999999998518968999999999862817777899999999865898789999999