HHsearch alignment for GI: 254780592 and conserved domain: cd00189
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=99.42 E-value=1e-12 Score=95.61 Aligned_cols=98 Identities=27% Similarity=0.363 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 56699999997421111100000000000000012457776543322355435999999953898547888999999986
Q gi|254780592|r 140 LISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQ 219 (271)
Q Consensus 140 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~ 219 (271)
T Consensus 2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 89999999998499999999999999859998999999999999859858999999999986989899999999999994
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 998999999998629172
Q gi|254780592|r 220 GRMKEAYSIASQELSPEE 237 (271)
Q Consensus 220 g~~~eA~~~~~~~L~~~~ 237 (271)
T Consensus 82 ~~~~~A~~~~~~al~~~P 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 999999999999997490