HHsearch alignment for GI: 254780592 and conserved domain: cd00189
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=99.37 E-value=9.6e-13 Score=95.76 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999874100124466655663275210013555532100000112588764221100002335669999999742
Q gi|254780592|r 73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG 152 (271)
Q Consensus 73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~ 152 (271)
T Consensus 3 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999984999999999999998599989999999999998598589999999999869898999999999999949
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 11111000000000000
Q gi|254780592|r 153 KHSEALIEYERALELSP 169 (271)
Q Consensus 153 ~~~~A~~~~~~~~~~~p 169 (271)
T Consensus 83 ~~~~A~~~~~~al~~~P 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred CHHHHHHHHHHHHHHCC
T ss_conf 99999999999997490