HHsearch alignment for GI: 254780592 and conserved domain: cd05804
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1.4e-07 Score=64.12 Aligned_cols=165 Identities=17% Similarity=0.078 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 1799999984201999999999999957578799999---9999987410012446665566327521001355553210
Q gi|254780592|r 39 PDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIV---YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLA 115 (271)
Q Consensus 39 ~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~---~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 115 (271)
T Consensus 46 ~hv~a~~~~~~g~~~~A~~~~~~~l~~~P~D~lalk~~~~~f~lg~~~g~~~~~~~~l~~~~p~~~~~~~~~gm~AF~le 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999987997899999999998698359999987674102541324056999987257348983699999999999
Q ss_pred HHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000112588764221100002335669999999742111110000000000000----001245777654332235543
Q gi|254780592|r 116 NAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN----ESSIVSNIAMSYLLMGDLKTA 191 (271)
Q Consensus 116 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~~~~g~~~~A 191 (271)
T Consensus 126 E~g~~~~Ae~~a~~al~~np~d~wa~HAvAHv~~~~g~~~eG~~~l~~~~~~w~~~~~l~~H~wWH~AL~~Le~g~~~~~ 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 85889999999999996399993799999999998388788999998517525778858989999999998877898899
Q ss_pred HHHHHHHHHCCC
Q ss_conf 599999995389
Q gi|254780592|r 192 EEKLRFASQMIG 203 (271)
Q Consensus 192 ~~~~~~al~~~p 203 (271)
T Consensus 206 l~iyD~~i~~~~ 217 (355)
T cd05804 206 LAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHCCCC
T ss_conf 999888744566