Query         gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs    173 out of 8782
Neff          10.1
Searched_HMMs 39220
Date          Mon May 30 01:32:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780592.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG4626 consensus               99.9 1.9E-26 4.9E-31  179.7  14.8  195   48-242   230-424 (966)
  2 KOG4626 consensus               99.9   1E-25 2.5E-30  175.3  15.3  199   49-247   129-361 (966)
  3 TIGR02917 PEP_TPR_lipo putativ  99.9 1.2E-24   3E-29  168.8  20.0  232   23-254    14-284 (924)
  4 COG5010 TadD Flp pilus assembl  99.9 1.2E-24 3.1E-29  168.7  17.8  245   15-260     4-256 (257)
  5 TIGR02917 PEP_TPR_lipo putativ  99.9 4.9E-24 1.2E-28  165.0  19.3  222   42-263   389-612 (924)
  6 TIGR02521 type_IV_pilW type IV  99.9 3.2E-24 8.2E-29  166.1  17.3  226   19-261     1-237 (247)
  7 KOG1126 consensus               99.9 2.3E-23 5.9E-28  160.8  16.0  216   41-256   358-607 (638)
  8 KOG1125 consensus               99.9 4.1E-22   1E-26  153.2  15.0  201   37-237   286-529 (579)
  9 PRK11447 cellulose synthase su  99.9 8.1E-21 2.1E-25  145.2  20.5  222   41-262   275-553 (1158)
 10 KOG1126 consensus               99.9 1.4E-21 3.6E-26  149.9  16.1  205   46-250   329-567 (638)
 11 TIGR02521 type_IV_pilW type IV  99.9 9.5E-22 2.4E-26  150.9  15.0  215   17-231     2-241 (247)
 12 COG3063 PilF Tfp pilus assembl  99.9   9E-21 2.3E-25  145.0  19.5  216   17-232     6-233 (250)
 13 KOG1155 consensus               99.9 4.3E-19 1.1E-23  134.7  23.3  194   41-234   267-494 (559)
 14 KOG0547 consensus               99.9 7.8E-20   2E-24  139.2  17.8  199   43-241   367-572 (606)
 15 KOG0547 consensus               99.8 3.3E-19 8.3E-24  135.4  16.9  209   46-254   336-552 (606)
 16 KOG1155 consensus               99.8 1.9E-18 4.9E-23  130.7  19.9  217   50-266   241-493 (559)
 17 KOG2002 consensus               99.8 2.4E-18 6.2E-23  130.1  16.0  248    3-250   124-386 (1018)
 18 COG3063 PilF Tfp pilus assembl  99.8 1.9E-18 4.9E-23  130.7  15.4  194   70-263    35-230 (250)
 19 PRK11788 hypothetical protein;  99.8 6.2E-17 1.6E-21  121.5  21.8  205   36-240    35-248 (389)
 20 TIGR00990 3a0801s09 mitochondr  99.8 1.7E-18 4.4E-23  131.0  13.0  232   33-264   393-641 (649)
 21 KOG1129 consensus               99.8 3.4E-18 8.7E-23  129.2  14.0  219   45-266   232-453 (478)
 22 KOG0624 consensus               99.8 1.2E-16 3.1E-21  119.7  21.6  207   35-241    37-258 (504)
 23 KOG1173 consensus               99.8 1.1E-17 2.7E-22  126.1  15.8  210   42-251   318-535 (611)
 24 TIGR00990 3a0801s09 mitochondr  99.8 1.3E-17 3.3E-22  125.6  15.6  214   47-260   374-597 (649)
 25 KOG1125 consensus               99.7 1.6E-16 4.1E-21  118.9  15.2  200   29-228   311-564 (579)
 26 KOG2076 consensus               99.7 1.1E-15 2.7E-20  113.9  19.4  225   40-264   143-508 (895)
 27 PRK11447 cellulose synthase su  99.7 2.2E-15 5.7E-20  111.9  19.6  131  113-243   279-423 (1158)
 28 KOG2002 consensus               99.7 1.6E-15   4E-20  112.8  18.4  229   25-257   192-432 (1018)
 29 KOG1129 consensus               99.7 1.4E-16 3.7E-21  119.2  13.0  200   43-242   263-465 (478)
 30 KOG1173 consensus               99.7 1.4E-15 3.6E-20  113.1  17.7  205   46-250   288-499 (611)
 31 KOG2003 consensus               99.7 1.5E-15 3.9E-20  112.9  15.2  192   48-239   502-693 (840)
 32 TIGR03302 OM_YfiO outer membra  99.7 4.9E-14 1.2E-18  103.7  21.0  197   16-232     3-229 (235)
 33 KOG1840 consensus               99.7 3.3E-14 8.3E-19  104.8  19.6  218   42-259   205-470 (508)
 34 COG2956 Predicted N-acetylgluc  99.6 4.4E-14 1.1E-18  104.0  18.1  201   35-236    34-244 (389)
 35 KOG1840 consensus               99.6 1.2E-14   3E-19  107.5  15.1  193   42-234   247-478 (508)
 36 KOG0495 consensus               99.6   2E-13   5E-18  100.0  21.1  215   28-243   575-790 (913)
 37 KOG2003 consensus               99.6 7.5E-15 1.9E-19  108.7  12.7  212   51-262   471-683 (840)
 38 PRK11788 hypothetical protein;  99.6   2E-13 5.2E-18   99.9  19.8  209   48-256    81-299 (389)
 39 KOG0495 consensus               99.6 3.9E-13   1E-17   98.1  20.9  214   40-254   554-767 (913)
 40 PRK10747 putative protoheme IX  99.6 4.9E-13 1.3E-17   97.5  20.4  217   44-263   126-385 (398)
 41 KOG1174 consensus               99.6 3.3E-14 8.4E-19  104.7  14.3  170   87-256   317-488 (564)
 42 KOG4162 consensus               99.6 1.1E-13 2.7E-18  101.6  16.9  198   43-240   485-788 (799)
 43 PRK12370 invasion protein regu  99.6 2.3E-13 5.9E-18   99.5  18.4  189   47-236   272-470 (553)
 44 PRK11189 lipoprotein NlpI; Pro  99.6 2.2E-14 5.5E-19  105.9  13.1  177   55-237    84-268 (297)
 45 KOG0550 consensus               99.6 2.3E-14 5.9E-19  105.7  13.2  194   45-238    58-319 (486)
 46 KOG0548 consensus               99.6 6.8E-14 1.7E-18  102.8  14.7  205   44-249   232-471 (539)
 47 KOG1174 consensus               99.6 1.5E-13 3.7E-18  100.8  16.1  179   56-234   218-396 (564)
 48 PRK02603 photosystem I assembl  99.6 3.9E-14   1E-18  104.3  10.9  150   43-212     6-160 (172)
 49 KOG2076 consensus               99.6 3.1E-13   8E-18   98.7  15.5  205   31-236   201-513 (895)
 50 KOG0548 consensus               99.6 3.1E-13   8E-18   98.7  14.5  177   50-234   312-488 (539)
 51 PRK10049 pgaA outer membrane p  99.5 1.5E-12 3.8E-17   94.6  17.8  100   44-144   107-206 (818)
 52 COG5010 TadD Flp pilus assembl  99.5 1.2E-12 2.9E-17   95.3  16.1  152   46-197    76-227 (257)
 53 KOG1127 consensus               99.5   2E-13 5.2E-18   99.9  11.9  186   49-234   471-658 (1238)
 54 KOG1128 consensus               99.5 1.9E-13   5E-18  100.0  11.8  182   46-234   434-615 (777)
 55 PRK10866 outer membrane protei  99.5 6.7E-12 1.7E-16   90.6  18.7  197   18-230     8-236 (243)
 56 KOG0553 consensus               99.5 1.7E-13 4.4E-18  100.3   9.7  113   43-155    88-200 (304)
 57 PRK02603 photosystem I assembl  99.5 1.3E-13 3.3E-18  101.1   9.0  120  120-239    15-153 (172)
 58 PRK12370 invasion protein regu  99.5 3.4E-12 8.7E-17   92.4  16.1  199   66-264   252-465 (553)
 59 COG3071 HemY Uncharacterized e  99.5 3.9E-11 9.9E-16   85.9  21.4  224   40-263    88-385 (400)
 60 PRK10747 putative protoheme IX  99.5 5.2E-12 1.3E-16   91.3  16.9  217   42-261    90-350 (398)
 61 PRK10049 pgaA outer membrane p  99.5 2.3E-11 5.9E-16   87.3  19.9  194   36-230    31-224 (818)
 62 KOG4162 consensus               99.5 4.9E-11 1.3E-15   85.3  21.1  212   52-263   460-778 (799)
 63 KOG1156 consensus               99.5 1.4E-11 3.7E-16   88.6  18.2  201   40-240    11-253 (700)
 64 KOG1128 consensus               99.5 2.7E-12 6.9E-17   93.0  14.4  203   46-263   408-611 (777)
 65 KOG0624 consensus               99.5 4.9E-12 1.2E-16   91.4  15.4  165   42-206    78-257 (504)
 66 KOG1127 consensus               99.5 6.9E-12 1.8E-16   90.5  15.8  208   48-255   431-645 (1238)
 67 KOG3060 consensus               99.5 2.2E-11 5.6E-16   87.4  17.9  162   76-237    58-222 (289)
 68 KOG0553 consensus               99.5 2.3E-12 5.9E-17   93.4  12.5  117   73-189    84-200 (304)
 69 KOG2376 consensus               99.4 7.9E-12   2E-16   90.2  15.0  193   45-241    21-259 (652)
 70 COG4783 Putative Zn-dependent   99.4 1.6E-11 4.1E-16   88.2  15.5  135  101-235   303-437 (484)
 71 KOG3060 consensus               99.4 1.6E-11 4.1E-16   88.3  15.2  180   41-220    57-239 (289)
 72 PRK10370 formate-dependent nit  99.4   3E-12 7.6E-17   92.7  11.3  121   50-170    61-184 (206)
 73 cd00189 TPR Tetratricopeptide   99.4   1E-12 2.6E-17   95.6   8.8   98  140-237     2-99  (100)
 74 KOG0550 consensus               99.4 2.1E-12 5.5E-17   93.6  10.4  167   72-238   171-353 (486)
 75 KOG1156 consensus               99.4 8.7E-12 2.2E-16   89.9  13.4  177   41-217    46-264 (700)
 76 COG4783 Putative Zn-dependent   99.4 1.9E-11 4.9E-16   87.8  14.9  156   62-234   298-453 (484)
 77 COG2956 Predicted N-acetylgluc  99.4 1.1E-10 2.9E-15   83.0  17.0  212   47-259    80-302 (389)
 78 cd00189 TPR Tetratricopeptide   99.4 9.6E-13 2.4E-17   95.8   6.3   97   73-169     3-99  (100)
 79 pfam04733 Coatomer_E Coatomer   99.3 8.5E-10 2.2E-14   77.7  19.1  201   51-259    81-286 (290)
 80 PRK10370 formate-dependent nit  99.3 4.4E-11 1.1E-15   85.6  11.9  119   87-205    64-185 (206)
 81 KOG4340 consensus               99.3 3.6E-10 9.1E-15   80.0  14.1  187   45-233    19-205 (459)
 82 COG3071 HemY Uncharacterized e  99.2 1.3E-09 3.3E-14   76.6  16.4  187   47-234   129-389 (400)
 83 COG4235 Cytochrome c biogenesi  99.2 1.6E-10 4.1E-15   82.1  11.8  129  120-248   138-270 (287)
 84 KOG2053 consensus               99.2 2.7E-09 6.9E-14   74.6  18.0  214   43-258    16-245 (932)
 85 CHL00033 ycf3 photosystem I as  99.2 7.7E-11   2E-15   84.1   7.9   76   44-119    39-117 (165)
 86 COG4105 ComL DNA uptake lipopr  99.2 6.6E-09 1.7E-13   72.2  17.3  196   27-240    17-237 (254)
 87 pfam04733 Coatomer_E Coatomer   99.2 8.1E-09 2.1E-13   71.7  17.4  205   42-254    41-249 (290)
 88 PRK11189 lipoprotein NlpI; Pro  99.2 7.5E-10 1.9E-14   78.0  11.5  216   15-234     5-227 (297)
 89 PRK10803 hypothetical protein;  99.2 1.3E-08 3.4E-13   70.3  17.9  102  148-249   152-259 (262)
 90 COG4235 Cytochrome c biogenesi  99.1 7.4E-10 1.9E-14   78.1  10.5  121   89-209   141-264 (287)
 91 KOG4648 consensus               99.1 1.1E-10 2.8E-15   83.1   5.7  201   40-241   101-336 (536)
 92 COG4785 NlpI Lipoprotein NlpI,  99.1 2.4E-09 6.2E-14   74.9  12.3  178   53-236    82-267 (297)
 93 KOG1915 consensus               99.1 2.3E-08 5.8E-13   69.0  16.2  207   58-265   310-530 (677)
 94 KOG1070 consensus               99.1   6E-08 1.5E-12   66.4  17.8  190   53-243  1441-1637(1710)
 95 CHL00033 ycf3 photosystem I as  99.1 6.1E-10 1.6E-14   78.6   7.5  120   71-210    32-155 (165)
 96 KOG1070 consensus               99.0 4.9E-08 1.2E-12   66.9  16.2  204   32-236  1453-1664(1710)
 97 KOG2376 consensus               99.0 3.9E-08   1E-12   67.5  15.4   56   40-98     83-138 (652)
 98 KOG3785 consensus               99.0   4E-08   1E-12   67.4  15.3  132   45-177    66-224 (557)
 99 COG0457 NrfG FOG: TPR repeat [  99.0 1.2E-07 3.1E-12   64.4  17.3  198   41-238    64-268 (291)
100 COG1729 Uncharacterized protei  99.0   4E-08   1E-12   67.4  14.7  107  141-247   144-256 (262)
101 TIGR02552 LcrH_SycD type III s  99.0 1.6E-09   4E-14   76.0   6.8  109   95-203     9-117 (137)
102 KOG1915 consensus               99.0 2.8E-07 7.2E-12   62.2  18.2  192   47-240    84-278 (677)
103 TIGR02795 tol_pal_ybgF tol-pal  99.0 8.7E-09 2.2E-13   71.5  10.0  104  139-242     3-112 (119)
104 cd05804 StaR_like StaR_like; a  98.9 1.4E-07 3.6E-12   64.1  15.9  165   39-203    46-217 (355)
105 PRK09782 bacteriophage N4 rece  98.9 8.4E-08 2.1E-12   65.5  14.2  190   45-236   518-707 (987)
106 KOG1130 consensus               98.9 1.1E-08 2.7E-13   70.9   9.1  188   46-233    27-262 (639)
107 TIGR02552 LcrH_SycD type III s  98.9 2.9E-09 7.3E-14   74.5   5.9   93   43-135    25-117 (137)
108 PRK10803 hypothetical protein;  98.9 1.9E-08 4.9E-13   69.4  10.1   97  114-210   152-254 (262)
109 cd05804 StaR_like StaR_like; a  98.9   2E-07   5E-12   63.2  15.2  168   69-237    42-217 (355)
110 KOG0543 consensus               98.9 2.1E-08 5.3E-13   69.2   9.9  101  143-243   213-328 (397)
111 TIGR02795 tol_pal_ybgF tol-pal  98.9 1.4E-08 3.5E-13   70.3   8.9  103   39-141     5-113 (119)
112 COG0457 NrfG FOG: TPR repeat [  98.8 2.9E-06 7.4E-11   56.1  19.2  192   49-240    36-236 (291)
113 KOG0543 consensus               98.8 7.5E-08 1.9E-12   65.8  10.7  143   73-234   211-354 (397)
114 KOG3785 consensus               98.8 3.3E-07 8.4E-12   61.8  13.1  187   43-237    29-216 (557)
115 COG4700 Uncharacterized protei  98.7 1.3E-06 3.3E-11   58.2  15.3  147   53-233    73-220 (251)
116 TIGR03302 OM_YfiO outer membra  98.7 1.4E-06 3.5E-11   58.0  14.7  166   68-259    31-222 (235)
117 KOG2047 consensus               98.7 3.1E-06 7.8E-11   55.9  15.9  153   49-201   360-540 (835)
118 PRK09782 bacteriophage N4 rece  98.7 6.4E-07 1.6E-11   60.1  11.7  186   40-230    48-271 (987)
119 KOG4648 consensus               98.6 9.6E-08 2.4E-12   65.1   7.1  102  142-243   101-202 (536)
120 pfam09295 ChAPs ChAPs (Chs5p-A  98.6   3E-07 7.5E-12   62.1   9.4  113   49-164   182-294 (395)
121 pfam09295 ChAPs ChAPs (Chs5p-A  98.6 4.4E-07 1.1E-11   61.1   9.3  118   78-198   177-294 (395)
122 KOG2053 consensus               98.6 3.3E-06 8.3E-11   55.7  13.5  199   40-239    47-259 (932)
123 COG1729 Uncharacterized protei  98.6 9.2E-07 2.3E-11   59.1  10.2  104  107-210   144-253 (262)
124 KOG2047 consensus               98.6 3.4E-05 8.6E-10   49.5  18.1  205   46-250   397-630 (835)
125 KOG4340 consensus               98.6 3.5E-06   9E-11   55.5  13.0  157   43-201    51-207 (459)
126 KOG1130 consensus               98.5 1.9E-07 4.8E-12   63.3   5.6  127  106-232   197-341 (639)
127 KOG3081 consensus               98.5 9.7E-06 2.5E-10   52.8  14.2  166   69-241   107-277 (299)
128 COG4700 Uncharacterized protei  98.5 7.5E-06 1.9E-10   53.5  13.5  134  129-263    81-218 (251)
129 KOG3081 consensus               98.5 3.2E-05 8.1E-10   49.7  16.7  179   70-255    72-256 (299)
130 COG4785 NlpI Lipoprotein NlpI,  98.4 1.3E-06 3.3E-11   58.2   7.8  183   19-204     8-199 (297)
131 KOG3617 consensus               98.4 2.1E-05 5.4E-10   50.8  13.8  143   46-198   810-993 (1416)
132 KOG1941 consensus               98.4 8.2E-05 2.1E-09   47.2  16.7  165   70-234    83-274 (518)
133 KOG4234 consensus               98.4 3.1E-06 7.8E-11   55.9   9.1  104  110-213   101-209 (271)
134 KOG1941 consensus               98.4   8E-06   2E-10   53.4  11.1  192   40-231   126-356 (518)
135 COG3118 Thioredoxin domain-con  98.4 2.2E-05 5.6E-10   50.7  13.0  163   69-233   133-299 (304)
136 KOG2610 consensus               98.3 5.1E-05 1.3E-09   48.4  14.6  152   48-199   115-274 (491)
137 KOG0376 consensus               98.3   1E-06 2.6E-11   58.9   5.6  121   38-158     6-128 (476)
138 PRK10866 outer membrane protei  98.3 0.00011 2.8E-09   46.4  15.7  157   68-240    30-209 (243)
139 KOG4234 consensus               98.3 3.9E-06 9.8E-11   55.3   8.0  102  141-242    98-204 (271)
140 KOG2796 consensus               98.2 3.5E-05 8.8E-10   49.4  11.9  168   72-239   124-319 (366)
141 KOG4555 consensus               98.2 8.8E-06 2.2E-10   53.1   8.8   87   48-134    55-145 (175)
142 KOG2796 consensus               98.2 1.3E-05 3.4E-10   52.0   9.5  146   71-216   178-333 (366)
143 COG3898 Uncharacterized membra  98.2 0.00034 8.8E-09   43.3  17.3  157   46-203   130-294 (531)
144 COG3118 Thioredoxin domain-con  98.2 2.9E-05 7.3E-10   49.9  11.1  126  108-234   138-264 (304)
145 KOG2610 consensus               98.2 2.8E-05 7.2E-10   50.0  10.8  182   75-257   108-304 (491)
146 KOG0551 consensus               98.1 3.9E-05 9.8E-10   49.2   9.4   87   44-130    89-179 (390)
147 KOG3617 consensus               98.1 0.00039 9.8E-09   43.0  14.1  147   76-232   806-993 (1416)
148 KOG4555 consensus               98.1 2.4E-05 6.2E-10   50.4   7.9   90  143-232    48-141 (175)
149 KOG0376 consensus               98.0 6.3E-06 1.6E-10   54.0   4.2  109   73-181     7-115 (476)
150 PRK04841 transcriptional regul  98.0 0.00095 2.4E-08   40.6  15.7   57  178-234   697-759 (903)
151 KOG4642 consensus               98.0 7.1E-06 1.8E-10   53.7   4.2   88   45-132    19-106 (284)
152 KOG1914 consensus               98.0  0.0011 2.7E-08   40.3  15.8  197   58-254   267-484 (656)
153 KOG1308 consensus               98.0 1.8E-06 4.5E-11   57.3   0.8   94   43-136   121-214 (377)
154 KOG0545 consensus               98.0 0.00015 3.9E-09   45.5  10.6  103  141-243   181-301 (329)
155 COG2976 Uncharacterized protei  98.0 0.00016 4.1E-09   45.4  10.6   93  109-202    94-189 (207)
156 KOG2471 consensus               97.9   4E-05   1E-09   49.1   6.1   26  209-234   622-647 (696)
157 PRK06330 transcript cleavage f  97.8   0.002 5.2E-08   38.6  16.2  120   47-168    43-180 (906)
158 KOG1585 consensus               97.8  0.0021 5.5E-08   38.5  14.4  189   42-231    37-252 (308)
159 COG3898 Uncharacterized membra  97.8  0.0022 5.7E-08   38.4  21.3  195   48-245    96-301 (531)
160 PRK10153 DNA-binding transcrip  97.8  0.0012   3E-08   40.1  12.4   81  169-250   409-489 (512)
161 PRK11906 transcriptional regul  97.8 8.6E-05 2.2E-09   47.0   6.3  145   87-231   275-432 (458)
162 COG3107 LppC Putative lipoprot  97.7  0.0021 5.2E-08   38.6  13.3  137   16-157    13-155 (604)
163 pfam08424 DUF1740 Protein of u  97.7 0.00082 2.1E-08   41.0  11.2   89   56-144     5-108 (231)
164 KOG0545 consensus               97.7 0.00038 9.6E-09   43.1   9.4  106  104-209   178-301 (329)
165 COG2976 Uncharacterized protei  97.7  0.0022 5.6E-08   38.4  13.1  129   40-170    57-191 (207)
166 KOG4642 consensus               97.7 6.9E-05 1.8E-09   47.6   5.3   92   76-167    16-107 (284)
167 PRK06330 transcript cleavage f  97.7  0.0037 9.4E-08   37.0  17.6  158   59-219   107-271 (906)
168 PRK04841 transcriptional regul  97.6   0.004   1E-07   36.8  16.3   84   47-130   463-557 (903)
169 pfam06552 TOM20_plant Plant sp  97.6 0.00025 6.3E-09   44.2   7.1   87   52-138     7-114 (186)
170 PRK11906 transcriptional regul  97.6 0.00052 1.3E-08   42.2   8.4  128  120-247   274-413 (458)
171 PRK10153 DNA-binding transcrip  97.6  0.0047 1.2E-07   36.4  14.5  108  155-262   351-468 (512)
172 COG4105 ComL DNA uptake lipopr  97.6  0.0048 1.2E-07   36.3  14.9  144   69-238    33-199 (254)
173 KOG0530 consensus               97.6  0.0023 5.8E-08   38.3  11.5  172   49-220    56-236 (318)
174 pfam02259 FAT FAT domain. The   97.6  0.0014 3.6E-08   39.6  10.3   33  186-218   272-304 (351)
175 KOG1308 consensus               97.5 0.00021 5.4E-09   44.6   5.3   86   82-167   126-211 (377)
176 KOG1585 consensus               97.5  0.0067 1.7E-07   35.4  13.0  162   72-233    33-217 (308)
177 KOG0530 consensus               97.5  0.0014 3.7E-08   39.5   9.2  167   50-216    92-269 (318)
178 pfam03704 BTAD Bacterial trans  97.5  0.0017 4.3E-08   39.1   9.4   61  172-232    62-122 (146)
179 KOG1258 consensus               97.4  0.0082 2.1E-07   34.9  13.4  173   48-220   309-489 (577)
180 pfam10300 IML2 Putative mitoch  97.4  0.0047 1.2E-07   36.3  11.0  105  118-222   230-339 (446)
181 PRK10941 putative transcriptio  97.3  0.0029 7.4E-08   37.7   9.3   81  173-253   182-262 (269)
182 KOG0551 consensus               97.3  0.0013 3.3E-08   39.8   7.4  106  137-242    80-189 (390)
183 KOG1586 consensus               97.3   0.012   3E-07   34.0  14.8  161   49-210    47-233 (288)
184 KOG3824 consensus               97.3 0.00072 1.8E-08   41.4   5.7   66   48-113   128-193 (472)
185 COG4649 Uncharacterized protei  97.2   0.013 3.4E-07   33.6  11.7   93   35-127    57-155 (221)
186 KOG1914 consensus               97.2   0.013 3.2E-07   33.7  11.5  146   86-231   347-497 (656)
187 KOG2471 consensus               97.2  0.0038 9.7E-08   36.9   8.7   43  173-215   336-378 (696)
188 KOG4507 consensus               97.2   0.004   1E-07   36.8   8.6  110  130-239   205-316 (886)
189 KOG4507 consensus               97.1  0.0069 1.8E-07   35.3   9.7   46  110-155   255-300 (886)
190 pfam03704 BTAD Bacterial trans  97.1  0.0038 9.6E-08   37.0   8.3  114   73-198     9-122 (146)
191 pfam06552 TOM20_plant Plant sp  97.1  0.0013 3.2E-08   39.9   5.6  104   85-212     6-120 (186)
192 KOG3824 consensus               97.1  0.0018 4.6E-08   38.9   6.3  144    2-146    35-192 (472)
193 KOG1550 consensus               97.1   0.019 4.9E-07   32.6  15.7  173   51-231   227-422 (552)
194 COG3914 Spy Predicted O-linked  97.1   0.019 4.8E-07   32.7  11.3   98   47-144    78-182 (620)
195 pfam10300 IML2 Putative mitoch  97.0    0.02 5.2E-07   32.5  12.1  107   49-155   229-340 (446)
196 PRK10941 putative transcriptio  97.0  0.0036 9.2E-08   37.1   6.9   77  139-215   182-258 (269)
197 COG3914 Spy Predicted O-linked  96.9    0.01 2.5E-07   34.4   9.0  143   44-186    38-190 (620)
198 pfam04910 DUF654 Protein of un  96.9   0.027 6.9E-07   31.7  11.7  148   58-205    28-209 (343)
199 KOG2396 consensus               96.9  0.0099 2.5E-07   34.4   8.5   62   52-113   121-183 (568)
200 pfam05843 Suf Suppressor of fo  96.8   0.032 8.1E-07   31.3  11.1   81   52-132    17-98  (275)
201 COG2909 MalT ATP-dependent tra  96.8   0.033 8.3E-07   31.2  15.1  154   46-199   468-645 (894)
202 COG2909 MalT ATP-dependent tra  96.8   0.033 8.4E-07   31.2  18.4  195   39-233   418-645 (894)
203 pfam05843 Suf Suppressor of fo  96.8   0.031   8E-07   31.3  10.3  115   25-139    22-142 (275)
204 COG0790 FOG: TPR repeat, SEL1   96.7   0.039 9.9E-07   30.7  14.7  166   46-220    51-236 (292)
205 KOG1258 consensus               96.7   0.039   1E-06   30.7  11.4  120  107-226   300-420 (577)
206 KOG3616 consensus               96.6   0.041   1E-06   30.6  10.7   22  176-197   769-790 (1636)
207 KOG0985 consensus               96.6   0.046 1.2E-06   30.3  16.5  167   68-240  1102-1313(1666)
208 pfam08424 DUF1740 Protein of u  96.5   0.049 1.3E-06   30.1  10.6  138   53-207    50-192 (231)
209 pfam02259 FAT FAT domain. The   96.5    0.05 1.3E-06   30.1  16.6  109  135-243   147-295 (351)
210 COG0790 FOG: TPR repeat, SEL1   96.5   0.053 1.3E-06   29.9  12.8  148   81-234    52-219 (292)
211 KOG1839 consensus               96.5   0.048 1.2E-06   30.2   9.7  155   76-230   938-1123(1236)
212 KOG1839 consensus               96.4   0.047 1.2E-06   30.2   9.6  102  133-234   968-1085(1236)
213 pfam00515 TPR_1 Tetratricopept  96.3  0.0034 8.5E-08   37.3   3.0   31   72-102     3-33  (34)
214 TIGR02561 HrpB1_HrpK type III   96.2    0.06 1.5E-06   29.6   9.0  102  152-255    30-135 (190)
215 KOG2396 consensus               96.1    0.03 7.8E-07   31.4   7.2   93   54-146    89-182 (568)
216 pfam00515 TPR_1 Tetratricopept  96.1  0.0049 1.3E-07   36.3   3.1   31  174-204     3-33  (34)
217 pfam04053 Coatomer_WDAD Coatom  96.1   0.084 2.1E-06   28.7  14.4  158   44-232   263-420 (435)
218 COG4976 Predicted methyltransf  96.0  0.0072 1.8E-07   35.2   3.6   61   46-106     5-65  (287)
219 smart00299 CLH Clathrin heavy   96.0   0.094 2.4E-06   28.4  10.4  130   70-218     7-137 (140)
220 KOG2300 consensus               96.0   0.096 2.5E-06   28.3  16.0  188   47-234   286-513 (629)
221 KOG0985 consensus               95.9     0.1 2.6E-06   28.2  13.0  175   38-218  1106-1325(1666)
222 KOG1310 consensus               95.8   0.022 5.7E-07   32.2   5.5   93   46-138   384-479 (758)
223 KOG1586 consensus               95.8    0.11 2.9E-06   27.9  14.5  186   50-250    28-242 (288)
224 KOG1310 consensus               95.8   0.023 5.8E-07   32.2   5.3   85   85-169   389-476 (758)
225 pfam04348 LppC LppC putative l  95.8    0.12   3E-06   27.8  13.6   84   77-160    31-120 (535)
226 pfam04053 Coatomer_WDAD Coatom  95.7    0.13 3.2E-06   27.6  11.4  129   79-233   264-392 (435)
227 smart00028 TPR Tetratricopepti  95.6  0.0097 2.5E-07   34.4   3.0   31   72-102     3-33  (34)
228 KOG1550 consensus               95.6    0.14 3.5E-06   27.4  11.1  115   50-168   263-394 (552)
229 COG5107 RNA14 Pre-mRNA 3'-end   95.5    0.15 3.8E-06   27.1  10.2  174   58-234   290-494 (660)
230 KOG2041 consensus               95.5    0.15 3.9E-06   27.1  13.6   13   69-81    691-703 (1189)
231 COG4259 Uncharacterized protei  95.4    0.16   4E-06   27.0   9.1   94   12-105     4-107 (121)
232 smart00028 TPR Tetratricopepti  95.3   0.017 4.2E-07   33.0   3.1   31  174-204     3-33  (34)
233 COG5191 Uncharacterized conser  95.2   0.043 1.1E-06   30.5   5.0   65   49-113   120-185 (435)
234 KOG3364 consensus               95.1    0.14 3.6E-06   27.3   7.5   79  173-251    33-116 (149)
235 COG5107 RNA14 Pre-mRNA 3'-end   95.1     0.2 5.1E-06   26.4  13.7   75   58-132    30-104 (660)
236 COG4649 Uncharacterized protei  95.0    0.21 5.3E-06   26.3  10.4   97  145-241   101-202 (221)
237 pfam07719 TPR_2 Tetratricopept  95.0   0.013 3.4E-07   33.6   2.0   31   72-102     3-33  (34)
238 pfam04781 DUF627 Protein of un  95.0    0.16 4.2E-06   26.9   7.5   27   77-103     3-29  (112)
239 pfam04781 DUF627 Protein of un  94.9   0.093 2.4E-06   28.4   6.1   47  190-236    62-108 (112)
240 pfam09613 HrpB1_HrpK Bacterial  94.9    0.23 5.8E-06   26.0  10.0   72   49-120    23-94  (156)
241 pfam09613 HrpB1_HrpK Bacterial  94.7    0.13 3.3E-06   27.6   6.4  102  151-253    23-124 (156)
242 pfam07719 TPR_2 Tetratricopept  94.7   0.024   6E-07   32.1   2.6   31  174-204     3-33  (34)
243 COG5191 Uncharacterized conser  94.7   0.069 1.8E-06   29.2   4.9   88   59-146    96-184 (435)
244 COG4976 Predicted methyltransf  94.7   0.051 1.3E-06   30.0   4.3   65   77-141     2-66  (287)
245 KOG3616 consensus               94.5    0.29 7.4E-06   25.4  11.1   14  179-192   713-726 (1636)
246 COG2912 Uncharacterized conser  94.0    0.36 9.2E-06   24.8   8.5   80  172-251   181-260 (269)
247 COG3629 DnrI DNA-binding trans  93.9    0.38 9.6E-06   24.7  10.9   79  170-248   151-236 (280)
248 pfam04184 ST7 ST7 protein. The  93.5    0.44 1.1E-05   24.3  11.9  153   84-249   182-339 (540)
249 KOG0546 consensus               93.3    0.17 4.3E-06   26.8   4.8   73  171-243   274-346 (372)
250 KOG0276 consensus               93.3    0.48 1.2E-05   24.1   7.1   48  114-166   647-694 (794)
251 KOG4814 consensus               93.1    0.52 1.3E-05   23.9   8.7   87   75-161   359-451 (872)
252 TIGR00540 hemY_coli hemY prote  92.7    0.59 1.5E-05   23.5  17.0   79  184-262   311-393 (409)
253 pfam11207 DUF2989 Protein of u  92.4    0.65 1.6E-05   23.3  10.1   77  148-226   117-198 (203)
254 KOG3783 consensus               92.2    0.68 1.7E-05   23.1  12.9   90   53-144   250-343 (546)
255 KOG1464 consensus               92.1     0.7 1.8E-05   23.0  12.6   52   47-98     38-93  (440)
256 KOG1538 consensus               91.8    0.75 1.9E-05   22.9  13.8   23   74-96    636-658 (1081)
257 pfam09797 NatB_MDM20 N-acetylt  91.5     0.8   2E-05   22.7   7.7   47  185-231   192-238 (365)
258 PRK13184 pknD serine/threonine  91.2    0.87 2.2E-05   22.5   8.0   94   46-140   485-588 (933)
259 KOG0529 consensus               91.1    0.89 2.3E-05   22.4  10.9  129   49-177    88-234 (421)
260 pfam00637 Clathrin Region in C  91.1    0.89 2.3E-05   22.4   9.5   39   79-117    16-55  (139)
261 pfam10255 Paf67 RNA polymerase  90.8    0.94 2.4E-05   22.3   7.8   96   69-166    74-192 (402)
262 pfam09670 Cas_Cas02710 CRISPR-  90.6    0.99 2.5E-05   22.1  10.4   58   43-100   138-199 (379)
263 COG3014 Uncharacterized protei  90.5       1 2.6E-05   22.1  13.5   74   18-98      8-86  (449)
264 pfam09986 DUF2225 Uncharacteri  90.2     1.1 2.7E-05   21.9   9.3   64  175-238   121-197 (214)
265 pfam10602 RPN7 26S proteasome   90.1     1.1 2.8E-05   21.9  11.3   96   71-166    37-141 (174)
266 COG3947 Response regulator con  90.0    0.53 1.3E-05   23.8   4.2   56  176-231   283-338 (361)
267 PRK11619 lytic murein transgly  89.7     1.2   3E-05   21.7  21.0   13   42-54     39-51  (645)
268 KOG2063 consensus               89.2     1.3 3.2E-05   21.5  14.2  162   73-234   507-712 (877)
269 COG1747 Uncharacterized N-term  89.0     1.3 3.4E-05   21.4  18.8   41   56-97    118-158 (711)
270 COG4455 ImpE Protein of avirul  88.4     1.4 3.7E-05   21.1   6.7   64   42-105     7-70  (273)
271 KOG2422 consensus               88.4     1.5 3.7E-05   21.1  12.0  154   49-203   251-450 (665)
272 pfam11846 DUF3366 Domain of un  87.7     1.6 4.1E-05   20.9   6.5   44  193-237   132-175 (193)
273 PRK10802 peptidoglycan-associa  85.9    0.82 2.1E-05   22.6   3.1   27   11-37      3-29  (173)
274 KOG0890 consensus               85.8       2 5.2E-05   20.2  16.3   60   43-102  1456-1515(2382)
275 KOG0128 consensus               83.1     2.7 6.8E-05   19.5  12.4  204   56-259   298-554 (881)
276 PRK10598 hypothetical protein;  82.4     1.6 4.1E-05   20.8   3.4   38   12-49      1-38  (186)
277 TIGR01004 PulS_OutS lipoprotei  81.1     3.2 8.1E-05   19.0   7.5   73   10-84      4-87  (136)
278 KOG1920 consensus               79.1     3.7 9.4E-05   18.6  17.3   57  178-234   958-1027(1265)
279 pfam06474 MLTD_N MLTD_N.        78.8    0.48 1.2E-05   24.0  -0.3   24   17-40      3-26  (93)
280 PRK09967 putative outer membra  78.2     2.8   7E-05   19.4   3.4   27   14-40      3-29  (160)
281 KOG4056 consensus               77.8       4  0.0001   18.4   5.4   38   73-110    84-121 (143)
282 KOG3807 consensus               76.9     4.3 0.00011   18.3  12.2  137   82-231   196-336 (556)
283 KOG2114 consensus               75.8     4.6 0.00012   18.1  10.8   61   37-98    334-396 (933)
284 pfam10345 Cohesin_load Cohesin  74.9     4.8 0.00012   17.9  18.7   65  178-242   362-435 (593)
285 COG5187 RPN7 26S proteasome re  74.4       5 0.00013   17.8  12.3   27  105-131   116-142 (412)
286 PRK11627 hypothetical protein;  74.2     2.9 7.4E-05   19.3   2.7   23   12-36      2-24  (192)
287 COG5159 RPN6 26S proteasome re  73.6     5.2 0.00013   17.7  16.3  191   40-230     7-270 (421)
288 KOG4279 consensus               73.6     5.2 0.00013   17.7   6.5  117   69-187   200-335 (1226)
289 cd07625 BAR_Vps17p The Bin/Amp  73.5     5.2 0.00013   17.7   9.9  127   71-202    46-173 (230)
290 PRK00022 lolB outer membrane l  72.4     3.2 8.3E-05   19.0   2.6   19   18-36      6-24  (203)
291 pfam11359 gpUL132 Glycoprotein  70.2     2.5 6.3E-05   19.7   1.6   32    2-36     53-84  (235)
292 pfam06957 COPI_C Coatomer (COP  69.5     6.4 0.00016   17.2   6.1   24   42-65    123-146 (421)
293 pfam07720 TPR_3 Tetratricopept  68.5       5 0.00013   17.8   2.8   25   73-97      4-28  (34)
294 KOG1463 consensus               68.1     6.9 0.00018   17.0  15.8   40  198-237   277-318 (411)
295 pfam04190 DUF410 Protein of un  67.8       7 0.00018   16.9  11.9   26   68-93     88-113 (260)
296 TIGR03659 IsdE heme ABC transp  67.2     5.4 0.00014   17.6   2.8   23   14-36      3-25  (289)
297 KOG0687 consensus               66.5     7.4 0.00019   16.8   9.2  114   56-170    84-213 (393)
298 TIGR03362 VI_chp_7 type VI sec  66.3     7.5 0.00019   16.8  13.7   62  172-233   213-277 (301)
299 COG3317 NlpB Uncharacterized l  66.2     5.4 0.00014   17.6   2.7   29   11-41      3-31  (342)
300 cd02684 MIT_2 MIT: domain cont  65.9     7.6 0.00019   16.7   3.3   14   53-66      4-17  (75)
301 PRK11063 metQ DL-methionine tr  65.3     7.1 0.00018   16.9   3.1   25   10-34      3-27  (271)
302 smart00386 HAT HAT (Half-A-TPR  65.1     7.9  0.0002   16.6   3.6   28   51-78      2-29  (33)
303 PRK09915 putative outer membra  64.8     7.1 0.00018   16.9   3.0   24   12-35      6-29  (488)
304 KOG4151 consensus               64.6       8 0.00021   16.6   7.2   95   45-139    62-162 (748)
305 PRK13731 conjugal transfer sur  64.3     3.7 9.5E-05   18.6   1.5   24   10-33      1-24  (243)
306 KOG2758 consensus               63.9     8.3 0.00021   16.5  11.1  176   57-232   116-314 (432)
307 smart00745 MIT Microtubule Int  63.2     8.5 0.00022   16.4   3.2   13   84-96     22-34  (77)
308 PRK11443 hypothetical protein;  62.7       5 0.00013   17.8   1.9   26   17-42      3-28  (120)
309 cd02679 MIT_spastin MIT: domai  62.2     8.2 0.00021   16.5   3.0   14   84-97     22-35  (79)
310 COG3056 Uncharacterized lipopr  62.1     8.9 0.00023   16.3   4.2   25   12-36     13-37  (204)
311 pfam10579 Rapsyn_N Rapsyn N-te  61.5     9.2 0.00023   16.2   5.8   20   46-65     16-35  (80)
312 TIGR03516 ppisom_GldI peptidyl  61.4     9.2 0.00023   16.2   5.8   51   18-68      5-61  (177)
313 PRK04405 prsA peptidylprolyl i  61.2     9.3 0.00024   16.2   3.4   25   11-35      4-29  (298)
314 PRK10449 heat-inducible protei  61.0     7.1 0.00018   16.9   2.5   24   12-37      1-24  (140)
315 PRK12450 foldase protein PrsA;  60.3     9.6 0.00025   16.1   3.5   22   12-33      5-26  (309)
316 PRK10783 mltD membrane-bound l  60.1     1.7 4.3E-05   20.7  -0.8   23   16-38      2-24  (449)
317 pfam07273 DUF1439 Protein of u  59.7     9.9 0.00025   16.0   3.4   29   20-48      8-36  (177)
318 pfam07721 TPR_4 Tetratricopept  59.6     8.7 0.00022   16.3   2.7   21  209-229     4-24  (26)
319 cd02683 MIT_1 MIT: domain cont  59.2     9.7 0.00025   16.1   2.9   14   83-96     19-32  (77)
320 pfam10516 SHNi-TPR SHNi-TPR. S  58.9     6.8 0.00017   17.0   2.1   25  209-233     4-28  (38)
321 PRK12700 flgH flagellar basal   58.9      10 0.00026   16.0   2.9   18   18-35     10-27  (230)
322 pfam02402 Lysis_col Lysis prot  58.7     2.9 7.4E-05   19.3   0.2   22   13-34      2-23  (46)
323 pfam04212 MIT MIT (microtubule  58.7      10 0.00026   15.9   3.0   11  220-230    19-29  (69)
324 PRK09859 multidrug efflux syst  58.6     6.6 0.00017   17.1   2.0   21   13-33      4-24  (385)
325 PRK03002 prsA peptidylprolyl i  58.6     8.4 0.00021   16.5   2.5   22   12-33      3-24  (285)
326 PRK03095 prsA peptidylprolyl i  58.5     7.9  0.0002   16.6   2.3   22   13-34      2-23  (287)
327 COG3065 Slp Starvation-inducib  58.4      10 0.00025   16.0   2.8   24   13-36      6-29  (191)
328 PRK10510 putative outer membra  58.2     7.7  0.0002   16.7   2.2   25   13-37      4-28  (219)
329 TIGR02722 lp_ uncharacterized   58.1     8.6 0.00022   16.4   2.5   18   16-33      5-22  (215)
330 TIGR03352 VI_chp_3 type VI sec  58.0     7.3 0.00019   16.8   2.1   20   18-37      4-23  (146)
331 KOG2581 consensus               56.4      11 0.00029   15.7  14.0   61  144-204   215-279 (493)
332 PRK12697 flgH flagellar basal   56.1     7.7  0.0002   16.7   2.0   24   12-35      6-29  (227)
333 pfam05590 DUF769 Xylella fasti  55.5     4.3 0.00011   18.2   0.6   23   15-37      6-28  (279)
334 PRK11023 hypothetical protein;  55.5     6.6 0.00017   17.1   1.5   21   12-32      1-21  (191)
335 PRK13883 conjugal transfer pro  55.4      11 0.00029   15.6   2.8   24   13-38      2-25  (156)
336 PRK12701 flgH flagellar basal   54.8     9.7 0.00025   16.1   2.3   21   14-34      3-23  (230)
337 pfam07219 HemY_N HemY protein   54.5      12 0.00031   15.5   8.4   29   76-104    91-119 (134)
338 pfam07901 DUF1672 Protein of u  54.4     7.7  0.0002   16.7   1.7   22   16-37      4-25  (304)
339 TIGR00752 slp outer membrane l  53.8     7.4 0.00019   16.8   1.6   25   14-38      2-26  (190)
340 KOG1497 consensus               53.2      13 0.00032   15.4  12.0   57   73-130   106-170 (399)
341 PRK01326 prsA foldase protein   52.8      13 0.00033   15.3   2.7   22   13-34      4-25  (310)
342 PRK01622 OxaA-like protein pre  51.5      13 0.00034   15.2   4.4   24   13-36      6-29  (266)
343 PRK00249 flgH flagellar basal   51.1      11 0.00029   15.6   2.2   22   15-36      4-25  (231)
344 TIGR02269 TIGR02269 Myxococcus  50.0      11 0.00029   15.6   2.0   24   18-41      2-25  (228)
345 pfam07079 DUF1347 Protein of u  49.3      15 0.00037   15.0  16.3   70  179-250   469-538 (550)
346 TIGR02887 spore_ger_x_C germin  48.8      11 0.00027   15.8   1.7   21   14-34      2-22  (400)
347 COG4941 Predicted RNA polymera  47.7      15 0.00039   14.8  15.7  132  118-250   270-409 (415)
348 TIGR02747 TraV type IV conjuga  47.4     9.8 0.00025   16.0   1.4   18   15-32      4-22  (174)
349 TIGR02508 type_III_yscG type I  47.4      16  0.0004   14.8   5.4   94  141-237     9-103 (118)
350 PRK10760 murein hydrolase B; P  47.1      16  0.0004   14.8   4.7   20   18-37      5-24  (357)
351 TIGR03525 GldK gliding motilit  46.9      12 0.00031   15.4   1.8   21   12-34      1-21  (449)
352 COG5633 Predicted periplasmic   46.9     8.6 0.00022   16.4   1.0   21   20-40      7-27  (123)
353 PRK02998 prsA peptidylprolyl i  46.8      16 0.00041   14.7   3.0   20   15-34      7-26  (283)
354 pfam12583 TPPII_N Tripeptidyl   46.6      16 0.00041   14.7   5.2   21   87-107    87-107 (134)
355 pfam03304 Mlp Mlp lipoprotein   46.4       9 0.00023   16.3   1.0   22   13-34      1-22  (150)
356 pfam00938 Lipoprotein_3 Lipopr  46.3      16 0.00041   14.7   3.7   56   19-74      2-64  (101)
357 PRK12698 flgH flagellar basal   45.7      15 0.00038   14.9   2.1   19   18-36      4-22  (224)
358 COG2015 Alkyl sulfatase and re  45.6      17 0.00042   14.6   4.3   51  175-225   455-505 (655)
359 PRK09578 periplasmic multidrug  45.5      17 0.00042   14.6   3.0   21   13-33      6-26  (385)
360 PRK09837 copper/silver efflux   45.4      16  0.0004   14.8   2.2   20   18-37      6-25  (460)
361 pfam06085 Rz1 Lipoprotein Rz1   44.7      13 0.00034   15.2   1.7   24   14-37      3-27  (59)
362 PRK02463 OxaA-like protein pre  44.1      18 0.00045   14.5   3.5   27   13-39      7-33  (307)
363 COG5536 BET4 Protein prenyltra  44.0      18 0.00045   14.5  10.6  128   52-179    90-234 (328)
364 PRK12788 flgH flagellar basal   43.9      15 0.00037   15.0   1.8   19   16-34      2-20  (231)
365 COG4669 EscJ Type III secretor  42.1      19 0.00048   14.3   3.8   27   17-43      7-33  (246)
366 COG3417 FlgN Collagen-binding   41.8      19 0.00049   14.3   2.9   17   17-33      7-23  (200)
367 KOG0567 consensus               41.7      19 0.00049   14.3  14.5  183   46-234    59-261 (289)
368 COG4764 Uncharacterized protei  41.6      19 0.00049   14.2   2.5   78   18-101     8-88  (197)
369 pfam10938 YfdX YfdX protein. Y  41.6      19 0.00049   14.2   7.7   62  173-234    76-145 (155)
370 PRK02944 OxaA-like protein pre  41.3      19 0.00049   14.2   2.7   22   13-34      4-25  (255)
371 TIGR03504 FimV_Cterm FimV C-te  40.8      20  0.0005   14.2   4.6   23  211-233     4-26  (44)
372 PRK11548 hypothetical protein;  40.8      20  0.0005   14.2   4.3   22   12-34      3-24  (113)
373 PRK11679 lipoprotein; Provisio  40.6      20 0.00051   14.1   2.4   21   14-34      9-29  (345)
374 PRK12696 flgH flagellar basal   40.2      20 0.00051   14.1   2.5   20   17-36      5-24  (238)
375 pfam10368 YkyA Putative cell-w  40.2      20 0.00051   14.1   5.7   16   21-36      2-17  (205)
376 pfam08139 LPAM_1 Prokaryotic m  39.7      21 0.00052   14.1   2.2   18   18-35      5-22  (26)
377 TIGR02996 rpt_mate_G_obs repea  39.4      19 0.00048   14.3   1.8   30   58-87      4-33  (48)
378 pfam11153 DUF2931 Protein of u  39.0      20 0.00051   14.1   1.9   16   17-32      3-18  (202)
379 COG3017 LolB Outer membrane li  38.6      21 0.00054   14.0   2.9   24   10-33      2-25  (206)
380 PHA00407 phage lambda Rz1-like  37.3      22 0.00057   13.8   2.8   24   13-36     32-55  (84)
381 PRK12407 flgH flagellar basal   37.1      22 0.00056   13.9   1.9   17   18-34      4-20  (220)
382 pfam06604 consensus             36.6      20  0.0005   14.2   1.5   22   12-33      3-24  (181)
383 PRK10796 LPS-assembly lipoprot  36.2      23 0.00059   13.7   1.9   29   13-41      2-30  (196)
384 COG5461 Type IV pili component  35.9      24  0.0006   13.7   2.4   24   14-37      7-30  (224)
385 pfam07980 SusD SusD family. Th  35.6      24 0.00061   13.7   3.3   29   70-98     83-111 (211)
386 PRK13616 lipoprotein LpqB; Pro  35.6      24 0.00061   13.7   3.5   25   16-40      8-32  (590)
387 pfam08631 SPO22 Meiosis protei  35.4      24 0.00061   13.6  17.7  123   47-169     4-153 (280)
388 KOG0292 consensus               35.0      24 0.00062   13.6   4.9   47   46-97    653-699 (1202)
389 KOG0686 consensus               35.0      24 0.00062   13.6  11.7  173   54-231   128-329 (466)
390 TIGR00756 PPR pentatricopeptid  34.8      25 0.00063   13.6   3.3   21  211-231     5-25  (35)
391 PRK12699 flgH flagellar basal   34.5      25 0.00063   13.6   2.5   22   15-36     18-39  (246)
392 pfam12262 Lipase_bact_N Bacter  33.3      26 0.00066   13.4   1.9   24   12-35      1-24  (269)
393 KOG2066 consensus               32.1      27 0.00069   13.3   8.8   33   64-96    499-531 (846)
394 PRK10175 hypothetical protein;  31.7      16  0.0004   14.8   0.4   21   17-37      3-23  (75)
395 TIGR03042 PS_II_psbQ_bact phot  31.4      28 0.00071   13.2   9.1   22   13-34      2-23  (142)
396 COG2913 OlmA Outer membrane li  31.3      28 0.00072   13.2   4.4   21   13-33      6-26  (147)
397 pfam03317 ELF ELF protein. Thi  30.3      29 0.00074   13.1  10.1   42   23-70     84-128 (284)
398 KOG1600 consensus               30.1      29 0.00074   13.1   1.5   34  187-224   274-309 (321)
399 PRK09861 cytoplasmic membrane   30.0      29 0.00075   13.1   3.2   27    6-34      2-28  (272)
400 TIGR01781 Trep_dent_lipo Trepo  29.7      30 0.00076   13.1   2.0   22   13-34      4-25  (463)
401 pfam07269 consensus             29.3      30 0.00077   13.0   1.8   32   22-54      7-38  (55)
402 COG3133 SlyB Outer membrane li  29.3      30 0.00077   13.0   1.6   25   13-37      2-26  (154)
403 pfam09680 Tiny_TM_bacill Prote  28.8      29 0.00073   13.2   1.3   19   14-32      5-23  (26)
404 PRK11162 mltA murein transglyc  28.7      31 0.00079   13.0   4.2   21   16-36      4-24  (362)
405 PRK13614 lipoprotein LpqB; Pro  28.4      31  0.0008   12.9   2.8   23   15-37      9-31  (573)
406 TIGR03524 GldJ gliding motilit  28.4      31  0.0008   12.9   2.7   19   15-33      7-25  (559)
407 pfam07312 DUF1459 Protein of u  27.8      30 0.00076   13.1   1.3   22   10-33      1-22  (84)
408 PRK04168 hypothetical protein;  27.6      18 0.00047   14.4   0.2   52   13-66      6-57  (336)
409 pfam06291 Lambda_Bor Bor prote  27.6      32 0.00081   12.9   1.4   21   12-34      1-21  (97)
410 pfam03032 Brevenin Brevenin/es  27.6      29 0.00074   13.2   1.1   24   10-33      1-24  (46)
411 pfam09533 DUF2380 Predicted li  27.3      33 0.00084   12.8   2.5   24   17-40      6-29  (220)
412 TIGR03044 PS_II_psb27 photosys  27.0      33 0.00085   12.8   6.9   51   17-73     12-62  (135)
413 PRK11459 multidrug resistance   26.8      34 0.00086   12.7   2.8   20   17-36      9-28  (478)
414 TIGR00380 cobD cobalamin biosy  26.8      34 0.00086   12.7   1.8   49   22-70     89-137 (322)
415 TIGR02522 pilus_cpaD pilus (Ca  26.7      34 0.00086   12.7   2.2   26   18-43      2-27  (211)
416 PRK11653 hypothetical protein;  26.0      35 0.00089   12.7   3.2   20   18-37     25-44  (223)
417 PRK10781 rcsF outer membrane l  25.6      35  0.0009   12.6   1.6   20   17-36      3-22  (133)
418 TIGR00926 2A1704 Oligopeptide   25.5      24 0.00061   13.7   0.4   26   14-39    193-218 (781)
419 PRK08878 adenosylcobinamide-ph  25.2      36 0.00092   12.6   5.7   17  215-231   220-236 (317)
420 pfam10140 essB Predicted membr  24.8      37 0.00093   12.5  10.4   80  149-232   233-313 (359)
421 PRK11616 hypothetical protein;  24.5      37 0.00095   12.5   1.7   19   16-34      6-24  (109)
422 TIGR00985 3a0801s04tom mitocho  24.3      37 0.00095   12.5   8.2   63   51-113    65-138 (155)
423 KOG2997 consensus               24.3      37 0.00095   12.5   3.3   24   82-105    31-54  (366)
424 PRK10974 glycerol-3-phosphate   24.2      38 0.00096   12.4   1.5   24   10-33      1-25  (439)
425 PRK13859 type IV secretion sys  24.1      38 0.00096   12.4   1.9   36   20-56      5-40  (55)
426 smart00777 Mad3_BUB1_I Mad3/BU  24.1      38 0.00096   12.4   3.2   43  189-231    80-124 (125)
427 PRK13684 Ycf48-like protein; P  24.0      38 0.00097   12.4   3.2   17   16-32     10-26  (333)
428 PRK10523 lipoprotein involved   23.7      38 0.00098   12.4   1.9   25   12-36      3-27  (234)
429 COG4851 CamS Protein involved   23.4      39 0.00099   12.4   1.6   21   13-33      2-22  (382)
430 COG5510 Predicted small secret  23.0      40   0.001   12.3   2.2   17   17-33      9-25  (44)
431 pfam05643 DUF799 Putative bact  23.0      40   0.001   12.3   2.4   19   17-35      4-22  (215)
432 TIGR03502 lipase_Pla1_cef extr  22.6      40   0.001   12.3   1.4   20   12-31      1-20  (792)
433 PRK09857 hypothetical protein;  22.5      41   0.001   12.3   7.7   56  181-236   215-270 (292)
434 pfam01535 PPR PPR repeat. This  22.2      41  0.0011   12.2   3.5   20  211-230     5-24  (31)
435 COG4808 Uncharacterized protei  21.3      43  0.0011   12.1   2.8   24   11-34      4-27  (152)
436 PRK10477 outer membrane lipopr  20.9      44  0.0011   12.0   2.3   20   15-34      4-23  (177)
437 PRK08476 F0F1 ATP synthase sub  20.4      45  0.0011   12.0   5.0   21    1-21      1-21  (141)
438 pfam00244 14-3-3 14-3-3 protei  20.3      45  0.0011   12.0  12.7   46  188-234   142-197 (236)
439 cd02680 MIT_calpain7_2 MIT: do  20.3      45  0.0011   12.0   2.9   15  217-231    17-31  (75)
440 pfam04090 RNA_pol_I_TF RNA pol  20.2      45  0.0012   12.0   8.7  137   73-219    44-184 (192)

No 1  
>KOG4626 consensus
Probab=99.95  E-value=1.9e-26  Score=179.71  Aligned_cols=195  Identities=17%  Similarity=0.146  Sum_probs=110.9

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             42019999999999999575787999999999987410012446665566327521001355553210000011258876
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAI  127 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  127 (271)
                      .+|+...|+..|.++++.||+-+++++++|.+|...+.+++|+..+.+++.+.|.+..++.+++-+|..+|..+-|...|
T Consensus       230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y  309 (966)
T KOG4626         230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY  309 (966)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf             04369999999987653797652778658899998722037899999997429730312043479973144278889999


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             42211000023356699999997421111100000000000000012457776543322355435999999953898547
Q gi|254780592|r  128 NRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR  207 (271)
Q Consensus       128 ~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  207 (271)
                      ++++..+|..++++.++|+.+...|+..+|...|.+++...|+..++..|+|.+|..+|.+++|...|.++++..|..+.
T Consensus       310 kral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa  389 (966)
T KOG4626         310 KRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA  389 (966)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHH
T ss_conf             99870399956777579999775054679999999998758763778887989998861221889999999863802455


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             88899999998699899999999862917286659
Q gi|254780592|r  208 IRQNLALVVGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       208 ~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
                      +..|||.+|.++|++++|+.+|+.+|..+|.-++.
T Consensus       390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda  424 (966)
T KOG4626         390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA  424 (966)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             64229999996054778999999887149407899


No 2  
>KOG4626 consensus
Probab=99.94  E-value=1e-25  Score=175.34  Aligned_cols=199  Identities=19%  Similarity=0.112  Sum_probs=89.4

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH----------------------
Q ss_conf             2019999999999999575787999999999987410012446665566327521001----------------------
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEV----------------------  106 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~----------------------  106 (271)
                      .|++++|...|+.+++++|++.++|+++|.+|...|+.+.|...|..+++++|....+                      
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626         129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             HCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCHHHHHHH
T ss_conf             22288999999999852821367775378898745777613799998885095045542244678876336133689999


Q ss_pred             ------------HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             ------------35555321000001125887642211000023356699999997421111100000000000000012
Q gi|254780592|r  107 ------------LAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSI  174 (271)
Q Consensus       107 ------------~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  174 (271)
                                  |..+|.++...|+...|+..|.+++..+|....+|.++|.+|...+.++.|+..|.+++..+|+...+
T Consensus       209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a  288 (966)
T KOG4626         209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA  288 (966)
T ss_pred             HHHHHCCCEEEEEHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH
T ss_conf             99862975045312000477604369999999987653797652778658899998722037899999997429730312


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             4577765433223554359999999538985478889999999869989999999986291728665999999
Q gi|254780592|r  175 VSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKS  247 (271)
Q Consensus       175 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~  247 (271)
                      +.|+|.+|..+|+.+.|+..|++++++.|...+++.|||.++...|+.+||+.+|+++|...|.+++..+..+
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg  361 (966)
T KOG4626         289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG  361 (966)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             0434799731442788899999987039995677757999977505467999999999875876377888798


No 3  
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266   This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.94  E-value=1.2e-24  Score=168.77  Aligned_cols=232  Identities=16%  Similarity=0.137  Sum_probs=181.3

Q ss_pred             HHHHHHHH--CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             99998540--3685433117999999842019999999999999575787999999999987410012446665566327
Q gi|254780592|r   23 PLLLFSSC--HLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILY  100 (271)
Q Consensus        23 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~  100 (271)
                      ..++++||  +.....+.....+..+++.+++.+|+-.++.+++.+|++.++.+.+|.+|...|+...|..-|+|+.++.
T Consensus        14 a~~lLsaCsGg~~~~~~~l~~~Ak~yl~~~~~~aAiI~LKNAL~~~p~~~EARflLg~~Y~~~Gd~~~AEKEL~kA~~lg   93 (924)
T TIGR02917        14 AILLLSACSGGDQLSPEELIEEAKKYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLAQGDAAAAEKELRKALSLG   93 (924)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             99998630578888968999999999861899722677578774086747889999999998459888889999998568


Q ss_pred             CCCCHHHHHH-----------------------------------HHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             5210013555-----------------------------------53210000011258876422110000233566999
Q gi|254780592|r  101 PEDQEVLAAY-----------------------------------GKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKG  145 (271)
Q Consensus       101 p~~~~~~~~~-----------------------------------~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg  145 (271)
                      +....+...+                                   |..+...|+.++|...|..+...+|....+...++
T Consensus        94 ~~~~~~~p~LAra~l~~~~~~~~~~~~~~~~~~~~~~~a~ll~~~G~A~L~~g~~~~A~~~~~~Al~~~p~~~~A~lglA  173 (924)
T TIGR02917        94 YPKEQVLPLLARAYLLQGKFQQVLDELEAKTSLDDEEAAELLALRGLAYLGLGELEEAQKSYEQALAIAPRSLDAKLGLA  173 (924)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99865539999999855957899985478877870669999999999988507878999999998763402735899999


Q ss_pred             HHHHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             9999742--11111000000000000000124577765433223554359999999538985478889999999869989
Q gi|254780592|r  146 SVLAQMG--KHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMK  223 (271)
Q Consensus       146 ~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~  223 (271)
                      .+....+  ++++|.....+++..+|...++|.-.|.+..-+|++++|...|++++++.|.+...+..++.+....|+++
T Consensus       174 ~~~~~~~ss~~~~a~~~~d~vL~~~P~~~dA~~L~g~l~~~~~~~~~A~~~y~ka~~~~P~~~~~~~~~~~~~l~~~~~e  253 (924)
T TIGR02917       174 RLALAENSSKLDEARALIDEVLTADPKNVDALLLKGDLLLSSGNIEQALAAYRKAIELRPNNIAVLLALATILLEAGEFE  253 (924)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
T ss_conf             99997337787889999999973287522279999999997277689999999999638887478999999999736667


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999862917286659999999983212
Q gi|254780592|r  224 EAYSIASQELSPEEATRNIKYIKSILSQRDP  254 (271)
Q Consensus       224 eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~  254 (271)
                      +|...++..+..-|.++...|+++++.-+.+
T Consensus       254 ~A~~~~d~~~k~~p~~p~a~y~kAlv~~q~~  284 (924)
T TIGR02917       254 EAEKDADALLKKAPNSPQAAYLKALVDFQKK  284 (924)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             8899999999984778468999999999833


No 4  
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.93  E-value=1.2e-24  Score=168.67  Aligned_cols=245  Identities=36%  Similarity=0.504  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCC--CCC------CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999985403685--433------1179999998420199999999999995757879999999999874100
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNP--RIS------IPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRT   86 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~   86 (271)
                      +..+++.-+++.++||.+..  +..      .........+...+...+...+-+...++|++..+ .+++..++..|+-
T Consensus         4 ~~~~~~a~l~~~~~~c~~~~~~~~~~~g~~~~a~~~~~~~~~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a   82 (257)
T COG5010           4 LGGAVLAALALSLAGCAGQAGQREMSTGASAKATGAPESSLAMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDA   82 (257)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCC
T ss_conf             877999999999742421157400002221001144789999876668999999998068201778-8877777740555


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             12446665566327521001355553210000011258876422110000233566999999974211111000000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                      +++..+..+....+|.+..++..+|......|++..|...+.++....|++++.|..+|.+|.+.|+.+.|...|.++++
T Consensus        83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~  162 (257)
T COG5010          83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE  162 (257)
T ss_pred             CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             50078875540147454999999999999804568899999998436999746666778999973675677899999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             00000012457776543322355435999999953898547888999999986998999999998629172866599999
Q gi|254780592|r  167 LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIK  246 (271)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~  246 (271)
                      +.|+.+.+..|+|..+...||++.|..++..+....+.++.+..||+++...+|++++|+.+..+.+.++....++.+++
T Consensus       163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~~~~~~~~~~l~  242 (257)
T COG5010         163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELLSEQAANNVAALR  242 (257)
T ss_pred             HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             42588446665899999727798999999999867887638999899998404886777762420036444766999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99983212999999
Q gi|254780592|r  247 SILSQRDPWKKIAK  260 (271)
Q Consensus       247 ~~l~~~~~~~~~a~  260 (271)
                      ....+.+.|..+.+
T Consensus       243 ~~~~~~~~~~~~~~  256 (257)
T COG5010         243 AAASQSGAWTQLAK  256 (257)
T ss_pred             HHHCCCCHHHHHHC
T ss_conf             86142431677740


No 5  
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266   This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.93  E-value=4.9e-24  Score=164.98  Aligned_cols=222  Identities=16%  Similarity=0.123  Sum_probs=140.0

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             99999842019999999999999575787999999999987410012446665566327521001355553210000011
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD  121 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  121 (271)
                      -...++..|++++|..+|.++-+.+|+|+.+...+|...+..|+..+|++.++++++++|+...+-..+...|++.|+++
T Consensus       389 lG~~~L~~g~~~~A~~yl~ka~~~~P~~a~~~t~lG~~~L~~Gd~~~Ai~dL~~A~~l~~~~~~a~~~L~~~yL~~~~~d  468 (924)
T TIGR02917       389 LGEAYLAKGDFEKAAEYLAKASELDPENAAARTKLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGEFD  468 (924)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999863896789999987610589808899999988620688347899999999727775347899999887420489


Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             25887642211000023356699999997421111100000000000000012457776543322355435999999953
Q gi|254780592|r  122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM  201 (271)
Q Consensus       122 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  201 (271)
                      +|+...++.....|+++..|+.+|.+|...|+..+|...|+++++++|+++.+..+++.+-...|+++.|...|++++..
T Consensus       469 KAla~~~~l~~~~pd~p~~~nl~G~i~l~~~~~~kA~~~f~~AL~i~p~~~~A~~nLA~~d~~~~~~~~A~~r~~~~l~~  548 (924)
T TIGR02917       469 KALAAAKKLEKKQPDNPSLHNLLGAIYLGKKDLAKAREAFEKALKIEPDFFPAAANLARIDLQEGNPDDAKQRFEKVLTI  548 (924)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999975288982689999999985178789999999875318778478999999887428968999999999875


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8985478889999999869989999999986291728665--9999999983212999999997
Q gi|254780592|r  202 IGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRN--IKYIKSILSQRDPWKKIAKARS  263 (271)
Q Consensus       202 ~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~--~~~l~~~l~~~~~~~~~a~a~~  263 (271)
                      +|.+.++...|+.++...|+.+++...++++...+|.+-.  +.+.+.++.+.+..+.++-++.
T Consensus       549 ~P~~~~a~~~La~L~~~~g~~~~~~~~l~~A~~~~~~~~~p~l~L~~~yl~~~~l~kAl~~l~~  612 (924)
T TIGR02917       549 DPKNLRALLALAELAARTGNEEEAVAWLEKAAEKNPKEIEPALALAQYYLSKGELKKALAILNE  612 (924)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7433799999999998518968999999999862817777899999999865898789999999


No 6  
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360    Proteins in this entry are designated PilF  and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.93  E-value=3.2e-24  Score=166.10  Aligned_cols=226  Identities=20%  Similarity=0.210  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHCCCC-CCCCHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             9999999985403685-433117-99999984201999999999999957578799999999998741001244666556
Q gi|254780592|r   19 VFLIPLLLFSSCHLNP-RISIPD-PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQV   96 (271)
Q Consensus        19 ~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~a   96 (271)
                      ++++.+++++||++.+ +..... .......+..                 .-..+++.+|..|+..|+++.|..-+++|
T Consensus         1 ~~l~~~~~l~GC~~~~P~~q~~~~~~~~~~~~~~-----------------~~a~~r~qLal~Yl~~G~~~~Ak~~l~~A   63 (247)
T TIGR02521         1 LALVLLLALTGCVTTPPTVQEQEVPESSRTTDRE-----------------KAAKIRVQLALGYLEQGDLEKAKENLDKA   63 (247)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             3887846785157887897787888875510279-----------------99999999999998607878999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCC--CCH
Q ss_conf             6327521001355553210000--0112588764221100002335669999999742--111110000000000--000
Q gi|254780592|r   97 AILYPEDQEVLAAYGKSLANAG--YLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG--KHSEALIEYERALEL--SPN  170 (271)
Q Consensus        97 l~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~--~p~  170 (271)
                      ++.+|++..++..++.+|...|  +.+.|...|++++...|++.+.+++.|..+.++|  ++++|+..|+.+++.  -+.
T Consensus        64 L~~dp~~~~a~~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~  143 (247)
T TIGR02521        64 LEHDPDDYDAYLALALYYQQLGRPELEKAEQSFRKALTLKPNNGDVLNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQ  143 (247)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             87376661289999999987179955789999999862489985232014577640489706899999999986688973


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---CCCCHHHHHHHH
Q ss_conf             00124577765433223554359999999538985478889999999869989999999986291---728665999999
Q gi|254780592|r  171 ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSP---EEATRNIKYIKS  247 (271)
Q Consensus       171 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~---~~~~~~~~~l~~  247 (271)
                      ....+.|+|.+....|+.+.|..+|++|+..+|+.+.....|+.+....|++.+|...+++-...   .+..+...+|..
T Consensus       144 ~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~~~~A~~~l~ry~~~~G~~~~~a~sL~Lg~  223 (247)
T TIGR02521       144 PARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLELAELYYERGQYAQARALLERYQQTVGVKNQTAESLWLGI  223 (247)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             30245549999986178688999999999858788855799999987507728999999999987367888873478999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99832129999999
Q gi|254780592|r  248 ILSQRDPWKKIAKA  261 (271)
Q Consensus       248 ~l~~~~~~~~~a~a  261 (271)
                      -+++..|-...++.
T Consensus       224 riA~~~Gd~~~~~~  237 (247)
T TIGR02521       224 RIARALGDVAAAKR  237 (247)
T ss_pred             HHHHHHCCHHHHHH
T ss_conf             99998442999999


No 7  
>KOG1126 consensus
Probab=99.91  E-value=2.3e-23  Score=160.81  Aligned_cols=216  Identities=12%  Similarity=0.060  Sum_probs=196.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHH----------------------------------HHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             99999984201999999999----------------------------------99995757879999999999874100
Q gi|254780592|r   41 PESLENMNHEQLLEVTSTIG----------------------------------LQYQSHTKNKMIGIVYADVLRRVGRT   86 (271)
Q Consensus        41 ~~~~~~~~~~~~~~A~~~~~----------------------------------~al~~~P~~~~~~~~~a~~l~~~g~~   86 (271)
                      +....+.+.++|++|...|+                                  ..++.+|+.|+.|...|.+|.-++++
T Consensus       358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh  437 (638)
T KOG1126         358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH  437 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHH
T ss_conf             98899998987899999999998614541132467888888877567788998988750878707787740256665679


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             12446665566327521001355553210000011258876422110000233566999999974211111000000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                      ++|+..|+++++++|...-++..+|.=+....++|+|...|++++..+|.+..+|+.+|.+|.++++++.|.-.|.++++
T Consensus       438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~  517 (638)
T KOG1126         438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE  517 (638)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHC
T ss_conf             99999887765468763212353077345457777677877765157805667888620302204104678998876422


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             00000012457776543322355435999999953898547888999999986998999999998629172866599999
Q gi|254780592|r  167 LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIK  246 (271)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~  246 (271)
                      ++|.+......+|..+.+.|+.++|+..+++|+-++|.++-..+..|.++..+++++||...++..-..-|.++.+.++.
T Consensus       518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ll  597 (638)
T KOG1126         518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALL  597 (638)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             79610357765259999860132799999998816878815678877888762236999999999998575057899999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9998321299
Q gi|254780592|r  247 SILSQRDPWK  256 (271)
Q Consensus       247 ~~l~~~~~~~  256 (271)
                      +.+.++=+..
T Consensus       598 gki~k~~~~~  607 (638)
T KOG1126         598 GKIYKRLGNT  607 (638)
T ss_pred             HHHHHHHCCC
T ss_conf             9999997330


No 8  
>KOG1125 consensus
Probab=99.89  E-value=4.1e-22  Score=153.19  Aligned_cols=201  Identities=20%  Similarity=0.171  Sum_probs=184.3

Q ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             31179999998420199999999999995757879999999999874100124466655663275210013555532100
Q gi|254780592|r   37 SIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN  116 (271)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  116 (271)
                      ..|..+....+..|++.+|+..|+.+++.||++.++|..+|.+....++-..|+.-++++++++|++.+++..++..|..
T Consensus       286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN  365 (579)
T KOG1125         286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN  365 (579)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             87489999998638905999999999861928789999961576503420889999999984699519999998888861


Q ss_pred             HCCHHHHHHHHHHHHH-----------------------------------------HHC--HHHHHHHHHHHHHHHHHH
Q ss_conf             0001125887642211-----------------------------------------000--023356699999997421
Q gi|254780592|r  117 AGYLDEGLDAINRAQR-----------------------------------------PDI--PDWQLISAKGSVLAQMGK  153 (271)
Q Consensus       117 ~g~~~~A~~~~~~a~~-----------------------------------------~~p--~~~~~~~~lg~~~~~~~~  153 (271)
                      .|.-..|+..+.+.+.                                         ..|  .+++....||.+|...|+
T Consensus       366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125         366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
T ss_conf             46688899999999984862111146676656667767788789999999999999857788884277626789740147


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             11110000000000000001245777654332235543599999995389854788899999998699899999999862
Q gi|254780592|r  154 HSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       154 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      ++.|+++|+.++..+|++...|+.+|.++....+.++|+..|++|+++.|+..++++|||..+..+|.|.||...+=.+|
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125         446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88899999999704984177898866886077553999999999984188726530101456620566999999999999


Q ss_pred             CCCC
Q ss_conf             9172
Q gi|254780592|r  234 SPEE  237 (271)
Q Consensus       234 ~~~~  237 (271)
                      +..+
T Consensus       526 ~mq~  529 (579)
T KOG1125         526 SMQR  529 (579)
T ss_pred             HHHH
T ss_conf             8653


No 9  
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89  E-value=8.1e-21  Score=145.24  Aligned_cols=222  Identities=15%  Similarity=0.130  Sum_probs=189.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC--CH------------H
Q ss_conf             999999842019999999999999575787999999999987410012446665566327521--00------------1
Q gi|254780592|r   41 PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED--QE------------V  106 (271)
Q Consensus        41 ~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~--~~------------~  106 (271)
                      .+....++.|+...|+..|.+++..+|+|++++-.+|.++.+.|++.+|..+|+++.+.+|+.  ..            .
T Consensus       275 ~~Gl~aL~~G~l~aAe~~l~~AL~~~PnD~daLGgLG~v~lRqG~~~eA~~yf~rA~~~d~~~~~~~kW~sll~ta~yW~  354 (1158)
T PRK11447        275 QQGLAAVDSGMGGKAIAELQQAVRANPKDSEALGALGQAYSQRGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  354 (1158)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             98999997799788999999999719998789988899999658889999999999970899854688999998878999


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--
Q ss_conf             355553210000011258876422110000233566999999974211111000000000000000124577765433--
Q gi|254780592|r  107 LAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLL--  184 (271)
Q Consensus       107 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~--  184 (271)
                      +...++.....|++.+|...++.+...+|.++.+...+|.++...+++..|+..|+.++..+|.+..++..+..+|..  
T Consensus       355 ~l~qa~~A~~~g~~~~A~~l~~~A~~~~p~~~~A~l~LaD~~~a~~d~~~AE~~Yr~~L~~~~~N~~AlrGL~~l~~~q~  434 (1158)
T PRK11447        355 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQTLRMDSGNTNAVRGLANIYRQQS  434 (1158)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             99999999987998999999999985599985599999999998399799999999999748998789999999998639


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             ----------------------------------------2235543599999995389854788899999998699899
Q gi|254780592|r  185 ----------------------------------------MGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKE  224 (271)
Q Consensus       185 ----------------------------------------~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~e  224 (271)
                                                              +|+...|+..+++++...|+++..++.||.+|..+|+..+
T Consensus       435 ~~~A~~ll~~l~~~q~~~~~~~~~~l~~~~l~~qA~~~~~~Gd~~~A~~~l~qa~~~~P~dpWlR~~LAr~~~~~G~~~~  514 (1158)
T PRK11447        435 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWITYRLAQDLWQAGQRSQ  514 (1158)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf             99999999837998887763144454679999999999978899999999999997189970499999999997799889


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             99999986291728665999999998-321299999999
Q gi|254780592|r  225 AYSIASQELSPEEATRNIKYIKSILS-QRDPWKKIAKAR  262 (271)
Q Consensus       225 A~~~~~~~L~~~~~~~~~~~l~~~l~-~~~~~~~~a~a~  262 (271)
                      |..+++..+...|.+++..|..+++. ..+.|.......
T Consensus       515 A~~lM~~l~~~~p~~pe~~yA~ALyls~~~~~~~A~a~L  553 (1158)
T PRK11447        515 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL  553 (1158)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             999999998449999899999999987678879999999


No 10 
>KOG1126 consensus
Probab=99.89  E-value=1.4e-21  Score=149.90  Aligned_cols=205  Identities=15%  Similarity=0.110  Sum_probs=183.2

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH----------------------------
Q ss_conf             9842019999999999999575787999999999987410012446665566----------------------------
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVA----------------------------   97 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al----------------------------   97 (271)
                      .+..-+..+|+..|.+.-+..++-.+++..+|.+|..++++++|..+|+.+-                            
T Consensus       329 ~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~  408 (638)
T KOG1126         329 SLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY  408 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             98888799999999864775378447999988999989878999999999986145411324678888888775677889


Q ss_pred             ------HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             ------32752100135555321000001125887642211000023356699999997421111100000000000000
Q gi|254780592|r   98 ------ILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNE  171 (271)
Q Consensus        98 ------~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~  171 (271)
                            ..+|+.++.|+.+|.|+.-+++.+.|++.|++++..+|...-++..+|+=+.....++.|..+|+.++..+|.+
T Consensus       409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh  488 (638)
T KOG1126         409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH  488 (638)
T ss_pred             HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             98988750878707787740256665679999998877654687632123530773454577776778777651578056


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             0124577765433223554359999999538985478889999999869989999999986291728665999999998
Q gi|254780592|r  172 SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILS  250 (271)
Q Consensus       172 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~  250 (271)
                      ..+|+.+|.+|.++++++.|+-+|++|++++|.++.+...+|.++...|+.|+|...+++++-.+|.+....+-++.+.
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126         489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             HHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             6788862030220410467899887642279610357765259999860132799999998816878815678877888


No 11 
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360    Proteins in this entry are designated PilF  and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.89  E-value=9.5e-22  Score=150.95  Aligned_cols=215  Identities=17%  Similarity=0.178  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHHHC------CCC-CCCCHH---------HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999999999985403------685-433117---------9999998420199999999999995757879999999999
Q gi|254780592|r   17 CIVFLIPLLLFSSCH------LNP-RISIPD---------PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVL   80 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~------~~~-~~~~~~---------~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l   80 (271)
                      ++++++++.+|++..      ..+ ......         +.+..++++|+++.|...+++||+.||++..++..+|..|
T Consensus         2 ~l~~~~~l~GC~~~~P~~q~~~~~~~~~~~~~~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~a~~~lA~~Y   81 (247)
T TIGR02521         2 ALVLLLALTGCVTTPPTVQEQEVPESSRTTDREKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDYDAYLALALYY   81 (247)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             88784678515788789778788887551027999999999999998607878999999999873766612899999999


Q ss_pred             HHHH--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8741--0012446665566327521001355553210000--011258876422110--000233566999999974211
Q gi|254780592|r   81 RRVG--RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAG--YLDEGLDAINRAQRP--DIPDWQLISAKGSVLAQMGKH  154 (271)
Q Consensus        81 ~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~~~~  154 (271)
                      .+.|  +.++|...|++++.++|++..+++++|..+..+|  ++++|...|.+|+..  -+.-+.++.++|.|..+.|+.
T Consensus        82 q~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~~~eN~G~C~~~~g~~  161 (247)
T TIGR02521        82 QQLGRPELEKAEQSFRKALTLKPNNGDVLNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQPARSYENAGLCALKAGDT  161 (247)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf             87179955789999999862489985232014577640489706899999999986688973302455499999861786


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             111000000000000000124577765433223554359999999538---98547888999999986998999999998
Q gi|254780592|r  155 SEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMI---GADSRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       155 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      ++|...|.+++..+|..+..+..++.+++..|++..|...+++..+..   +..++.+..-..+-...|+.+.+.++-.+
T Consensus       162 ~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~~~~A~~~l~ry~~~~G~~~~~a~sL~Lg~riA~~~Gd~~~~~~y~~q  241 (247)
T TIGR02521       162 EKAEKYLTRALKIDPQRPESLLELAELYYERGQYAQARALLERYQQTVGVKNQTAESLWLGIRIARALGDVAAAKRYGAQ  241 (247)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             88999999999858788855799999987507728999999999987367888873478999999984429999999998


No 12 
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88  E-value=9e-21  Score=144.96  Aligned_cols=216  Identities=19%  Similarity=0.180  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCC--CH--------HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999999985403685433--11--------79999998420199999999999995757879999999999874100
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRIS--IP--------DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRT   86 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~   86 (271)
                      ..|.++..+.+++|++.+...  +-        ...++.+++.||+..|...++++++.||++..+|..+|.+|...|+.
T Consensus         6 ~~i~lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~   85 (250)
T COG3063           6 TRISLVFSLALGACVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN   85 (250)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf             88999998763200589975332258899999999999999778999999889999884952088999999999990775


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             12446665566327521001355553210000011258876422110--0002335669999999742111110000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRP--DIPDWQLISAKGSVLAQMGKHSEALIEYERA  164 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~  164 (271)
                      +.|-+.|++++.++|++.+++.++|..+..+|++++|...|++++..  -+..+..+.++|.|..+.|+.+.|...++++
T Consensus        86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra  165 (250)
T COG3063          86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA  165 (250)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             56799999998529886405521069997089868999999998718887775304544578886437704479999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             00000000124577765433223554359999999538985478889999999869989999999986
Q gi|254780592|r  165 LELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQE  232 (271)
Q Consensus       165 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~  232 (271)
                      ++.+|+.+.....++......|++..|..+++...+..+...+.......+-...|+-+.+-++-.+-
T Consensus       166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             88375787678998798875313018999999997025665899998999999965488999999999


No 13 
>KOG1155 consensus
Probab=99.87  E-value=4.3e-19  Score=134.67  Aligned_cols=194  Identities=16%  Similarity=0.148  Sum_probs=117.0

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----------------------------------HHHHHCC
Q ss_conf             999999842019999999999999575787999999999----------------------------------9874100
Q gi|254780592|r   41 PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADV----------------------------------LRRVGRT   86 (271)
Q Consensus        41 ~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~----------------------------------l~~~g~~   86 (271)
                      ..+....++.|+++|+..|+...+.||-..+-.-.+..+                                  |...+++
T Consensus       267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH  346 (559)
T KOG1155         267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH  346 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
T ss_conf             99998861220788999999998549773215878767799972117899999999875147752324431378887768


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             12446665566327521001355553210000011258876422110000233566999999974211111000000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                      ++|+.+|+++++++|....+|..+|.-|..+.+...|.+.|+++++.+|.+.++|+.+|..|.-.+.+.-|.=.|+++..
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155         347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999999998328431378998607989835618899999988814925678885206899981356999999999872


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             00000012457776543322355435999999953898547888999999986998999999998629
Q gi|254780592|r  167 LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      ..|+++..|..+|.+|...++.++|+.+|++++..+..+..++..||..+..+++.++|...+++.+.
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155         427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             49996689999999999855689999999888852464338999999999998747999999999999


No 14 
>KOG0547 consensus
Probab=99.86  E-value=7.8e-20  Score=139.22  Aligned_cols=199  Identities=15%  Similarity=0.147  Sum_probs=143.9

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      +..++...+-.+-...|+++...||+|++++...|.++.-.+++++|++-|++++.++|++...+..++..+++++++++
T Consensus       367 a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~  446 (606)
T KOG0547         367 AAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE  446 (606)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99986011308899998998744988983257677899999989999987998760582533799999999999878999


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             588764221100002335669999999742111110000000000000------0012457776543-322355435999
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN------ESSIVSNIAMSYL-LMGDLKTAEEKL  195 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~-~~g~~~~A~~~~  195 (271)
                      ++..|+.+...-|..++.+...|.++..++++++|.+.|.+++++.|.      +...+.+.|.+.. ..+++.+|+..+
T Consensus       447 ~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll  526 (606)
T KOG0547         447 SMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL  526 (606)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf             99999999986889823778999998317767789998888885064201132460544304676435165489999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9999538985478889999999869989999999986291728665
Q gi|254780592|r  196 RFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRN  241 (271)
Q Consensus       196 ~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~  241 (271)
                      ++|++++|....++..||.+..++|+.++|+++|++++........
T Consensus       527 ~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E  572 (606)
T KOG0547         527 RKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE  572 (606)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9987259447899999989999886599999999999999885999


No 15 
>KOG0547 consensus
Probab=99.84  E-value=3.3e-19  Score=135.40  Aligned_cols=209  Identities=12%  Similarity=0.070  Sum_probs=187.5

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98420199999999999995757879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      ++-.|+.-.|...|+++++.+|.+...++.+|.+|....+.++....|+++..++|+++.++..+|..+.-++++++|..
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547         336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             23148810116669999845765523899999998601130889999899874498898325767789999998999998


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             7642211000023356699999997421111100000000000000012457776543322355435999999953898-
Q gi|254780592|r  126 AINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA-  204 (271)
Q Consensus       126 ~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-  204 (271)
                      .|++++.++|.+.-.+..++-...++++.++++..|+.+....|+.++.+...|.++..+++++.|+..|.+|+.+.|. 
T Consensus       416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~  495 (606)
T KOG0547         416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE  495 (606)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             79987605825337999999999998789999999999998688982377899999831776778999888888506420


Q ss_pred             -----CHHHHHHHHHH-HHHCCCHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHH
Q ss_conf             -----54788899999-99869989999999986291728665999-9999983212
Q gi|254780592|r  205 -----DSRIRQNLALV-VGLQGRMKEAYSIASQELSPEEATRNIKY-IKSILSQRDP  254 (271)
Q Consensus       205 -----~~~~~~~La~~-~~~~g~~~eA~~~~~~~L~~~~~~~~~~~-l~~~l~~~~~  254 (271)
                           +...+.+-|.+ +...+++++|+.++++++..+|......- +..+.-|+..
T Consensus       496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547         496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             113246054430467643516548999999999872594478999999899998865


No 16 
>KOG1155 consensus
Probab=99.83  E-value=1.9e-18  Score=130.68  Aligned_cols=217  Identities=13%  Similarity=0.070  Sum_probs=186.2

Q ss_pred             CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH-------------------
Q ss_conf             0199999999999995-75787999999999987410012446665566327521001355-------------------
Q gi|254780592|r   50 EQLLEVTSTIGLQYQS-HTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAA-------------------  109 (271)
Q Consensus        50 ~~~~~A~~~~~~al~~-~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------------------  109 (271)
                      .+.+++...+...+.. -|+++......|.+.+..-++++|++.|+...+.+|....-.-.                   
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~  320 (559)
T KOG1155         241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ  320 (559)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88889999999887516874177999999988612207889999999985497732158787677999721178999999


Q ss_pred             ---------------HHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             ---------------55321000001125887642211000023356699999997421111100000000000000012
Q gi|254780592|r  110 ---------------YGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSI  174 (271)
Q Consensus       110 ---------------~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  174 (271)
                                     +|..|.-.++-++|...|++++.++|+...+|..+|+-|...++...|+++|+.++++.|.+..+
T Consensus       321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155         321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             HHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf             99875147752324431378887768999999999983284313789986079898356188999999888149256788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHH
Q ss_conf             457776543322355435999999953898547888999999986998999999998629172866599-9999998321
Q gi|254780592|r  175 VSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK-YIKSILSQRD  253 (271)
Q Consensus       175 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~-~l~~~l~~~~  253 (271)
                      |+.+|++|.-.+-..=|+-+|++|.+..|.+++.|..||.+|...++.+||+.+|.+++...+.+.+.. .+..+..+-.
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~  480 (559)
T KOG1155         401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK  480 (559)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             85206899981356999999999872499966899999999998556899999998888524643389999999999987


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             2999999997114
Q gi|254780592|r  254 PWKKIAKARSNHN  266 (271)
Q Consensus       254 ~~~~~a~a~~~~~  266 (271)
                      ...+.+++...+-
T Consensus       481 d~~eAa~~yek~v  493 (559)
T KOG1155         481 DLNEAAQYYEKYV  493 (559)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             4799999999999


No 17 
>KOG2002 consensus
Probab=99.81  E-value=2.4e-18  Score=130.08  Aligned_cols=248  Identities=13%  Similarity=0.041  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-HHHHH
Q ss_conf             7875699999899999999-------999998540368543311799999984201999999999999957578-79999
Q gi|254780592|r    3 ILFCPVILFLKKIKCIVFL-------IPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKN-KMIGI   74 (271)
Q Consensus         3 ~~~~~~~~f~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~-~~~~~   74 (271)
                      +|+-++...+++..++...       ...+.++.-.+.+.+.....++.-.++.++|..|..+|++++..+|.. ++..+
T Consensus       124 ~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI  203 (1018)
T KOG2002         124 DMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI  203 (1018)
T ss_pred             HCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             50575033123232220477637779999999996088535889989999961213899999999998508666787631


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             999999874100124466655663275210013555532100---00011258876422110000233566999999974
Q gi|254780592|r   75 VYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN---AGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQM  151 (271)
Q Consensus        75 ~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~  151 (271)
                      ..|.++...|+.+.|+..|.++++++|.+..++..+|.+-..   ...+..+...+.++...++.+|.....++..+...
T Consensus       204 gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK  283 (1018)
T KOG2002         204 GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK  283 (1018)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             14667875034366799999998507155999999999998701567788899998888760689957999997777413


Q ss_pred             HHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             2111110000000000000---00124577765433223554359999999538985-4788899999998699899999
Q gi|254780592|r  152 GKHSEALIEYERALELSPN---ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD-SRIRQNLALVVGLQGRMKEAYS  227 (271)
Q Consensus       152 ~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~La~~~~~~g~~~eA~~  227 (271)
                      |+++.+......++.....   -....+++|.+|..+|++++|..+|.++++.+|++ .-.++.+|+++...|.+.+|..
T Consensus       284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~  363 (1018)
T KOG2002         284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF  363 (1018)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHHHH
T ss_conf             53789999999999861014777788999999988622689999999999724888762001212578987132778899


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99986291728665999999998
Q gi|254780592|r  228 IASQELSPEEATRNIKYIKSILS  250 (271)
Q Consensus       228 ~~~~~L~~~~~~~~~~~l~~~l~  250 (271)
                      ++++++...|++.....+.+.+.
T Consensus       364 ~fEkv~k~~p~~~etm~iLG~Ly  386 (1018)
T KOG2002         364 CFEKVLKQLPNNYETMKILGCLY  386 (1018)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999986765088999988678


No 18 
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81  E-value=1.9e-18  Score=130.70  Aligned_cols=194  Identities=18%  Similarity=0.087  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             79999999999874100124466655663275210013555532100000112588764221100002335669999999
Q gi|254780592|r   70 KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLA  149 (271)
Q Consensus        70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~  149 (271)
                      ..+.+.+|.-|.+.|++.+|...++++++.+|++..++..++.+|...|+.+.|.+.|++++..+|++.+.+++.|..+.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99999999999977899999988999988495208899999999999077556799999998529886405521069997


Q ss_pred             HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             742111110000000000--000001245777654332235543599999995389854788899999998699899999
Q gi|254780592|r  150 QMGKHSEALIEYERALEL--SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYS  227 (271)
Q Consensus       150 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~  227 (271)
                      .+|++++|...|++++..  .+.....+.|+|.+..++|+.+.|..+|+++++.+|+++.....++......|++.+|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             08986899999999871888777530454457888643770447999999988375787678998798875313018999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999862917286659999999983212999999997
Q gi|254780592|r  228 IASQELSPEEATRNIKYIKSILSQRDPWKKIAKARS  263 (271)
Q Consensus       228 ~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a~a~~  263 (271)
                      .+++....-+..+...++..-+.++-|-...+..+.
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~  230 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ  230 (250)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             999997025665899998999999965488999999


No 19 
>PRK11788 hypothetical protein; Provisional
Probab=99.80  E-value=6.2e-17  Score=121.46  Aligned_cols=205  Identities=17%  Similarity=0.091  Sum_probs=177.6

Q ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC---C-CCHHHHHHH
Q ss_conf             331179999998420199999999999995757879999999999874100124466655663275---2-100135555
Q gi|254780592|r   36 ISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYP---E-DQEVLAAYG  111 (271)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p---~-~~~~~~~~~  111 (271)
                      .+....+..+++-+++.++|++.|-.+++.||+..++++.+|..+++.|+.++|+.+-+.++....   . ...++..+|
T Consensus        35 l~~~Y~~Gln~Ll~~q~dkAid~f~~~~~~~~~t~e~hlaLG~LfRrrGE~dRAIriHq~Ll~rp~L~~~~r~~a~~ELa  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             66999989988725894599999999986481149999999999996560889999999997287989999999999999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHH
Q ss_conf             3210000011258876422110000233566999999974211111000000000000000-----12457776543322
Q gi|254780592|r  112 KSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNES-----SIVSNIAMSYLLMG  186 (271)
Q Consensus       112 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~g  186 (271)
                      .-|...|-+|.|...|.+....++....+...+..+|...+++++|++..++.......+.     -.+..++.-....|
T Consensus       115 ~Dy~~aGllDRAE~~f~~l~~~~~~~~~al~~Ll~iye~~~dW~~Ai~~a~~L~~~~~~~~~~~iAhy~CElA~~~~~~~  194 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEDDFAEGALRQLLTIYQQEKDWQKAIEVAERLEKLGGDSLRKEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             99986774999999999998285426999999999999864599999999999870476506999999999999998748


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             355435999999953898547888999999986998999999998629172866
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                      +.++|...+++|++.+|.+.+++..+|.++...|++++|...++++...+|.-.
T Consensus       195 ~~~~A~~~L~kAL~~dp~cvRA~lllg~l~~~~g~~~~Ai~~l~~i~~q~p~~l  248 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH
T ss_conf             999999999999874824341899999999987999999999999997395779


No 20 
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor; InterPro: IPR005687    The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom70 proteins. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane.
Probab=99.80  E-value=1.7e-18  Score=130.95  Aligned_cols=232  Identities=17%  Similarity=0.136  Sum_probs=185.2

Q ss_pred             CCCCCCHHHH-HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             8543311799-999984201999999999999957578799999999998741001244666556632752100135555
Q gi|254780592|r   33 NPRISIPDPE-SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYG  111 (271)
Q Consensus        33 ~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  111 (271)
                      .|......+. +.-.+..++-+++.+.|++|++.||+|+++++.+|....-.|++++|-.-|+++++++|+....++.+|
T Consensus       393 ~P~~~qSYI~~A~~~~~~~~~~~~~~~F~~Al~~~~~~~~~YYHRaQl~FI~~~f~~A~KDy~K~~~LDp~~IF~~IQL~  472 (649)
T TIGR00990       393 DPRVTQSYIKRASINLELGDPDKAEEDFDKALKKNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSYIQLG  472 (649)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             78731789999999741578422588999998618898751101778998873077675457766432711022689999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHHHHHH-
Q ss_conf             32100000112588764221100002335669999999742111110000000000000001------24577765433-
Q gi|254780592|r  112 KSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESS------IVSNIAMSYLL-  184 (271)
Q Consensus       112 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~-  184 (271)
                      .+.++.|.++.....|.++...-|..|+.++..|-++..+.++++|++-|..++++......      -+.+.+.++.+ 
T Consensus       473 ~~~Y~~~~~~~~~~~F~~~~~~Fp~~P~V~Nyy~ElL~D~~~F~~A~~~fD~AI~LE~~~~~~~~~v~PL~~Ka~~L~~n  552 (649)
T TIGR00990       473 VLQYKLGSIASSMALFRRCKKNFPEAPDVYNYYGELLLDKNKFDEAIEKFDLAIELEKELKPIYVNVLPLINKALALFQN  552 (649)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHC
T ss_conf             98863034434789999998617788885305788861436799999985689998750598076313367789997626


Q ss_pred             --HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCCCH--HHHH---HHHHHHHHHHH
Q ss_conf             --223554359999999538985478889999999869989999999986291--72866--5999---99999832129
Q gi|254780592|r  185 --MGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSP--EEATR--NIKY---IKSILSQRDPW  255 (271)
Q Consensus       185 --~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~--~~~~~--~~~~---l~~~l~~~~~~  255 (271)
                        ..+|.+|...+++|+.++|....+...||++..++|+.+||+.+|+++-..  ...+.  -+.|   .+..+.-+..|
T Consensus       553 P~~~~f~EA~~L~EKA~~~DP~~~~A~~~lAQl~LQQ~~v~EAl~~FE~~A~LART~~E~~~Ai~yAEA~~~Q~~v~~~Y  632 (649)
T TIGR00990       553 PWKQDFIEAENLLEKALIIDPECDIAVATLAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRVQIQVQEDY  632 (649)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             52100789999988863048841478999999876234689999999877876301677898988888988889987314


Q ss_pred             HHHHHHHHH
Q ss_conf             999999971
Q gi|254780592|r  256 KKIAKARSN  264 (271)
Q Consensus       256 ~~~a~a~~~  264 (271)
                      +.+|+-.+-
T Consensus       633 P~LA~Kl~~  641 (649)
T TIGR00990       633 PELASKLQG  641 (649)
T ss_pred             HHHHHHHHH
T ss_conf             278999875


No 21 
>KOG1129 consensus
Probab=99.79  E-value=3.4e-18  Score=129.15  Aligned_cols=219  Identities=15%  Similarity=0.115  Sum_probs=200.7

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99842019999999999999575787999999999987410012446665566327521001355553210000011258
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      -++..|.+.+|+..++..++..| .++.+.-++.+|.+..++..|+.++.+.++..|.+...+...++++..+++.++|.
T Consensus       232 CylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~  310 (478)
T KOG1129         232 CYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDAL  310 (478)
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99981682666899998764377-61699999999987235889999986465238832566663699999997078899


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             8764221100002335669999999742111110000000000000001245777654332235543599999995389-
Q gi|254780592|r  125 DAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG-  203 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-  203 (271)
                      +.|+.+++.+|.+.++..-+|.-|..-++++-|+..|++.+.....+++.+.|+|.+-+..++++-++..|++|++.-. 
T Consensus       311 ~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~  390 (478)
T KOG1129         311 QLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ  390 (478)
T ss_pred             HHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf             99999984087650035665530013898689999999999832777677765888987540030317889999863368


Q ss_pred             --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --854788899999998699899999999862917286659999999983212999999997114
Q gi|254780592|r  204 --ADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPWKKIAKARSNHN  266 (271)
Q Consensus       204 --~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a~a~~~~~  266 (271)
                        .-+++|+|||.+....|++.-|..+++-+|..++.+.......+++..+.|  ++..+|+..+
T Consensus       391 ~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G--~i~~Arsll~  453 (478)
T KOG1129         391 PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG--DILGARSLLN  453 (478)
T ss_pred             CCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_conf             64156666400116770342488888889875058523888876899885127--6387899998


No 22 
>KOG0624 consensus
Probab=99.79  E-value=1.2e-16  Score=119.69  Aligned_cols=207  Identities=16%  Similarity=0.134  Sum_probs=185.4

Q ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             43311799999984201999999999999957578799999999998741001244666556632752100135555321
Q gi|254780592|r   35 RISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSL  114 (271)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  114 (271)
                      .+...+.-..+.+..+++..|+..|..+++.||+|..++++.|.+|..+|+..-|+.-+.+++++.|+-..+....|.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624          37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCHHH
T ss_conf             99999998899997346778999988887078066999998777776525774003308999861831888888722035


Q ss_pred             HHHCCHHHHHHHHHHHHHHHCHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             0000011258876422110000233---56699------------99999742111110000000000000001245777
Q gi|254780592|r  115 ANAGYLDEGLDAINRAQRPDIPDWQ---LISAK------------GSVLAQMGKHSEALIEYERALELSPNESSIVSNIA  179 (271)
Q Consensus       115 ~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~l------------g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  179 (271)
                      +.+|+++.|...|+..+..+|+...   ....+            ...+...|++..++......+++.|=+.+.+...+
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra  196 (504)
T KOG0624         117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA  196 (504)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             53252888987999997259873026889988776899999999999884387465599999888853713368999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             65433223554359999999538985478889999999869989999999986291728665
Q gi|254780592|r  180 MSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRN  241 (271)
Q Consensus       180 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~  241 (271)
                      .+|+..|++..|+..++.+..++.++++..+.....++..|+..++....+.+|..+|.+..
T Consensus       197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624         197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             88885386888888899987404665388898998997661188789999999806953336


No 23 
>KOG1173 consensus
Probab=99.79  E-value=1.1e-17  Score=126.10  Aligned_cols=210  Identities=15%  Similarity=0.101  Sum_probs=188.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             99999842019999999999999575787999999999987410012446665566327521001355553210000011
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD  121 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  121 (271)
                      -+.=++..+.+.+|..+|.|+...||.-..+|+.+|.++.-.|+.+||++.+..|-++.|..-.-..-+|.-|.+++++.
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173         318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
T ss_conf             77899981486799999888760376532799987677650105788999999999866677631789999998742398


Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             258876422110000233566999999974211111000000000000-------0001245777654332235543599
Q gi|254780592|r  122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSP-------NESSIVSNIAMSYLLMGDLKTAEEK  194 (271)
Q Consensus       122 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~g~~~~A~~~  194 (271)
                      -|...|..+....|.++-.+..+|.+....+.+.+|...|..++...+       ...+.+.|+|.++.+.+.+++|+.+
T Consensus       398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173         398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999871189860443314420332754688999999998876630543221157787678999997667999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHH
Q ss_conf             9999953898547888999999986998999999998629172866599-99999983
Q gi|254780592|r  195 LRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK-YIKSILSQ  251 (271)
Q Consensus       195 ~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~-~l~~~l~~  251 (271)
                      +++++...|.+++++..+|.++..+|+++.|+..+.++|..+|.+.... .++..+..
T Consensus       478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173         478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             9999871877656888899999996580779999999871487528999999999975


No 24 
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor; InterPro: IPR005687    The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom70 proteins. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane.
Probab=99.78  E-value=1.3e-17  Score=125.60  Aligned_cols=214  Identities=13%  Similarity=0.044  Sum_probs=188.3

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             84201999999999999957578799999999998741001244666556632752100135555321000001125887
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDA  126 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~  126 (271)
                      .-.++-.+|...+.++++.+|.-...++..|.+....|..+++.+.|++++..+++++.+|..+|....=.|+|++|.+.
T Consensus       374 ~L~~~~~~A~~Dl~K~IEL~P~~~qSYI~~A~~~~~~~~~~~~~~~F~~Al~~~~~~~~~YYHRaQl~FI~~~f~~A~KD  453 (649)
T TIGR00990       374 CLKGKHLEALADLSKSIELDPRVTQSYIKRASINLELGDPDKAEEDFDKALKKNSEDPDIYYHRAQLHFIKGEFAQAGKD  453 (649)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf             31288157899877654227873178999999974157842258899999861889875110177899887307767545


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf             6422110000233566999999974211111000000000000000124577765433223554359999999538985-
Q gi|254780592|r  127 INRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD-  205 (271)
Q Consensus       127 ~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-  205 (271)
                      |+++..+||.....+..||..-.+.|..+.....|+++....|..|++++..|.++..++++++|+.-|..|+++.... 
T Consensus       454 y~K~~~LDp~~IF~~IQL~~~~Y~~~~~~~~~~~F~~~~~~Fp~~P~V~Nyy~ElL~D~~~F~~A~~~fD~AI~LE~~~~  533 (649)
T TIGR00990       454 YQKSIDLDPDFIFSYIQLGVLQYKLGSIASSMALFRRCKKNFPEAPDVYNYYGELLLDKNKFDEAIEKFDLAIELEKELK  533 (649)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             77664327110226899999886303443478999999861778888530578886143679999998568999875059


Q ss_pred             -----HHHHHHHHHHHHH---CCCHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             -----4788899999998---69989999999986291728665999999-9983212999999
Q gi|254780592|r  206 -----SRIRQNLALVVGL---QGRMKEAYSIASQELSPEEATRNIKYIKS-ILSQRDPWKKIAK  260 (271)
Q Consensus       206 -----~~~~~~La~~~~~---~g~~~eA~~~~~~~L~~~~~~~~~~~l~~-~l~~~~~~~~~a~  260 (271)
                           .-.+.+-+.++.+   ..+|.||..++++++..+|.......-.+ ++-|++.-.++.+
T Consensus       534 ~~~~~v~PL~~Ka~~L~~nP~~~~f~EA~~L~EKA~~~DP~~~~A~~~lAQl~LQQ~~v~EAl~  597 (649)
T TIGR00990       534 PIYVNVLPLINKALALFQNPWKQDFIEAENLLEKALIIDPECDIAVATLAQLLLQQGDVDEALK  597 (649)
T ss_pred             CEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8076313367789997626521007899999888630488414789999998762346899999


No 25 
>KOG1125 consensus
Probab=99.74  E-value=1.6e-16  Score=118.92  Aligned_cols=200  Identities=22%  Similarity=0.232  Sum_probs=160.6

Q ss_pred             HHCCCCC-CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC------
Q ss_conf             4036854-331179999998420199999999999995757879999999999874100124466655663275------
Q gi|254780592|r   29 SCHLNPR-ISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYP------  101 (271)
Q Consensus        29 ~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p------  101 (271)
                      +...+|. ......-.+.+...++=..|+..++++++.+|+|.++++.+|..|...|.-.+|+.++++++..+|      
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~  390 (579)
T KOG1125         311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV  390 (579)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC
T ss_conf             98619287899999615765034208899999999846995199999988888614668889999999998486211114


Q ss_pred             -------------------------------------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             -------------------------------------2100135555321000001125887642211000023356699
Q gi|254780592|r  102 -------------------------------------EDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAK  144 (271)
Q Consensus       102 -------------------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  144 (271)
                                                           .++.++..+|.+|.-.|+|+.|...|+.++...|++...|+.+
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL  470 (579)
T KOG1125         391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL  470 (579)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             66766566677677887899999999999998577888842776267897401478889999999970498417789886


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CHHHHHHHHH
Q ss_conf             999997421111100000000000000012457776543322355435999999953898----------5478889999
Q gi|254780592|r  145 GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA----------DSRIRQNLAL  214 (271)
Q Consensus       145 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~La~  214 (271)
                      |..+.--.+.++|+..|.+++++.|....+++|+|..++..|.|++|+.+|-.|+.+.+.          +..+|..|-.
T Consensus       471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~  550 (579)
T KOG1125         471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL  550 (579)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             68860775539999999999841887265301014566205669999999999998653155544477525789999999


Q ss_pred             HHHHCCCHHHHHHH
Q ss_conf             99986998999999
Q gi|254780592|r  215 VVGLQGRMKEAYSI  228 (271)
Q Consensus       215 ~~~~~g~~~eA~~~  228 (271)
                      ++..+++.|-+...
T Consensus       551 als~~~~~D~l~~a  564 (579)
T KOG1125         551 ALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHCCCCHHHHHH
T ss_conf             99970881678874


No 26 
>KOG2076 consensus
Probab=99.74  E-value=1.1e-15  Score=113.89  Aligned_cols=225  Identities=17%  Similarity=0.210  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             79999998420199999999999995757879999999999874100124466655663275210013555532100000
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      ..++......|++++|+..+..+++.+|.++.++..+|.+|.+.|+.+++...+-.+..++|.+...|..++....++|+
T Consensus       143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076         143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99988999807789999999999972736513699999999980329999999999996699886899999999986012


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------------------------------
Q ss_conf             11258876422110000233566999999974211111000000000000------------------------------
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSP------------------------------  169 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p------------------------------  169 (271)
                      +..|.-.|.+++..+|.+++....++.+|.+.|+...|+..|.+.+...|                              
T Consensus       223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076         223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999860886228999999999984707888999999986289015899999999999999971078999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780592|r  170 --------------------------------------------------------------------------------  169 (271)
Q Consensus       170 --------------------------------------------------------------------------------  169 (271)
                                                                                                      
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r  382 (895)
T KOG2076         303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR  382 (895)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99777410340356278999999998678887669999986013678716540022034555320147877775630576


Q ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHC
Q ss_conf             -----------------------------00012457776543322355435999999953898-547888999999986
Q gi|254780592|r  170 -----------------------------NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA-DSRIRQNLALVVGLQ  219 (271)
Q Consensus       170 -----------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~La~~~~~~  219 (271)
                                                   +.++.+..++.++..-|++.+|+.+|..++...+. +..+|+.+|.+|..+
T Consensus       383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l  462 (895)
T KOG2076         383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL  462 (895)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             75432002443458889888888337845557899999999983655888999999986483335513469899999987


Q ss_pred             CCHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             9989999999986291728665999-99999832129999999971
Q gi|254780592|r  220 GRMKEAYSIASQELSPEEATRNIKY-IKSILSQRDPWKKIAKARSN  264 (271)
Q Consensus       220 g~~~eA~~~~~~~L~~~~~~~~~~~-l~~~l~~~~~~~~~a~a~~~  264 (271)
                      |.+++|...|+++|...|.+-++.. +-.+..+.+...++..+..+
T Consensus       463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076         463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             4289999999999952898601663199999763888899998713


No 27 
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73  E-value=2.2e-15  Score=111.88  Aligned_cols=131  Identities=22%  Similarity=0.258  Sum_probs=79.0

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHH
Q ss_conf             2100000112588764221100002335669999999742111110000000000000001--------------24577
Q gi|254780592|r  113 SLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESS--------------IVSNI  178 (271)
Q Consensus       113 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~~~  178 (271)
                      .....|+...|...|.+++...|++++++-.+|.++.+.|++.+|...|+++....|+...              .....
T Consensus       279 ~aL~~G~l~aAe~~l~~AL~~~PnD~daLGgLG~v~lRqG~~~eA~~yf~rA~~~d~~~~~~~kW~sll~ta~yW~~l~q  358 (1158)
T PRK11447        279 AAVDSGMGGKAIAELQQAVRANPKDSEALGALGQAYSQRGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  358 (1158)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99977997889999999997199987899888999996588899999999999708998546889999988789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             76543322355435999999953898547888999999986998999999998629172866599
Q gi|254780592|r  179 AMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       179 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      |......|++.+|...++++...+|+++.+...||.++...|++.+|+..|+.+|..++.+....
T Consensus       359 a~~A~~~g~~~~A~~l~~~A~~~~p~~~~A~l~LaD~~~a~~d~~~AE~~Yr~~L~~~~~N~~Al  423 (1158)
T PRK11447        359 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQTLRMDSGNTNAV  423 (1158)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999879989999999999855999855999999999983997999999999997489987899


No 28 
>KOG2002 consensus
Probab=99.72  E-value=1.6e-15  Score=112.82  Aligned_cols=229  Identities=11%  Similarity=0.096  Sum_probs=141.4

Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHCCC
Q ss_conf             998540368543311799999984201999999999999957578799999999998741---00124466655663275
Q gi|254780592|r   25 LLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVG---RTAQALAVMRQVAILYP  101 (271)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g---~~~~A~~~~~~al~~~p  101 (271)
                      .+...|.+.+++...    .--+.-++.+.|...|.++++.||.+..++..+|.+-....   .+..++..+.++-..+|
T Consensus       192 ~inp~~~aD~rIgig----~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~  267 (1018)
T KOG2002         192 RINPACKADVRIGIG----HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN  267 (1018)
T ss_pred             HCCCCCCCCCCCHHH----HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             508666787631146----6787503436679999999850715599999999999870156778889999888876068


Q ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q ss_conf             21001355553210000011258876422110---00023356699999997421111100000000000000-012457
Q gi|254780592|r  102 EDQEVLAAYGKSLANAGYLDEGLDAINRAQRP---DIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNE-SSIVSN  177 (271)
Q Consensus       102 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~  177 (271)
                      ++|.++..++.-+...|+++.+......++..   .+..++.++++|.++..+|++++|..+|..++..+++. .-.+..
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G  347 (1018)
T KOG2002         268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG  347 (1018)
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99579999977774135378999999999986101477778899999998862268999999999972488876200121


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHH
Q ss_conf             7765433223554359999999538985478889999999869----989999999986291728665999999-99832
Q gi|254780592|r  178 IAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQG----RMKEAYSIASQELSPEEATRNIKYIKS-ILSQR  252 (271)
Q Consensus       178 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g----~~~eA~~~~~~~L~~~~~~~~~~~l~~-~l~~~  252 (271)
                      +|+.++..|+++.|+.+|++.+...|++.+...-||-.|...+    ..+.|..++.+++.+.|.+.+...-.+ ++.+.
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~  427 (1018)
T KOG2002         348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf             25789871327788999999998676508899998867886401257789999999887750534088899999999812


Q ss_pred             HHHHH
Q ss_conf             12999
Q gi|254780592|r  253 DPWKK  257 (271)
Q Consensus       253 ~~~~~  257 (271)
                      +.|..
T Consensus       428 d~~~s  432 (1018)
T KOG2002         428 DPWAS  432 (1018)
T ss_pred             CHHHH
T ss_conf             76889


No 29 
>KOG1129 consensus
Probab=99.72  E-value=1.4e-16  Score=119.21  Aligned_cols=200  Identities=17%  Similarity=0.135  Sum_probs=183.1

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      +..+.+..+...|...+..-+++-|.|...+...|.++..+++.+.|+++++.+++.+|.+.++..-++..|.--++.+-
T Consensus       263 skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~  342 (478)
T KOG1129         263 SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM  342 (478)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHH
T ss_conf             99998723588999998646523883256666369999999707889999999984087650035665530013898689


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             588764221100002335669999999742111110000000000000---00124577765433223554359999999
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN---ESSIVSNIAMSYLLMGDLKTAEEKLRFAS  199 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al  199 (271)
                      |+.+|++.+...-..++.+.++|.|...-++++-+..+|.+++....+   ..++|+|+|...+.-||+..|.++|+-++
T Consensus       343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129         343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             99999999983277767776588898754003031788999986336864156666400116770342488888889875


Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             5389854788899999998699899999999862917286659
Q gi|254780592|r  200 QMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       200 ~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
                      ..+|++.+++.|||..-...|+.++|..+++.+-+..|.-.+.
T Consensus       423 ~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129         423 TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             0585238888768998851276387899998765418530035


No 30 
>KOG1173 consensus
Probab=99.72  E-value=1.4e-15  Score=113.09  Aligned_cols=205  Identities=13%  Similarity=0.053  Sum_probs=145.0

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98420199999999999995757879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      ....++..+--..-.+.++.+|+.+..|+..|.-|...|++.+|..+|-|+..++|....+|..+|..+...|+-+.|+.
T Consensus       288 l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAma  367 (611)
T KOG1173         288 LYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMA  367 (611)
T ss_pred             HHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99816521699988879872888773146577899981486799999888760376532799987677650105788999


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             7642211000023356699999997421111100000000000000012457776543322355435999999953898-
Q gi|254780592|r  126 AINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA-  204 (271)
Q Consensus       126 ~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-  204 (271)
                      .|..+.+.-|....-...+|.-|.+.++...|...|..++.+.|+++-++..+|......+.+.+|..+|+++++..++ 
T Consensus       368 aY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~  447 (611)
T KOG1173         368 AYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV  447 (611)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999986667763178999999874239899999999871189860443314420332754688999999998876630


Q ss_pred             ---C---HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             ---5---478889999999869989999999986291728665999999998
Q gi|254780592|r  205 ---D---SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILS  250 (271)
Q Consensus       205 ---~---~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~  250 (271)
                         .   ...+.|||.+++.++++++|+..++++|...|.+.+..---+++.
T Consensus       448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy  499 (611)
T KOG1173         448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY  499 (611)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             5432211577876789999976679999999999871877656888899999


No 31 
>KOG2003 consensus
Probab=99.70  E-value=1.5e-15  Score=112.91  Aligned_cols=192  Identities=12%  Similarity=0.058  Sum_probs=146.3

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             42019999999999999575787999999999987410012446665566327521001355553210000011258876
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAI  127 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  127 (271)
                      .+|+++.|.+.|+.++..|....+++++.|..+...|+.++|+.+|-++-.+--++.+++..++.+|..+.+...|.+++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003         502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             ECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             15868999999999971742889999971123987447899999999999999702999999999999854879999999


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             42211000023356699999997421111100000000000000012457776543322355435999999953898547
Q gi|254780592|r  128 NRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR  207 (271)
Q Consensus       128 ~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  207 (271)
                      -++....|+++..+..+|.+|.+.|+..+|.+++-.+..-.|-+.+...++|..|+...-.+.|+.+|++|.-+.|+-+.
T Consensus       582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k  661 (840)
T KOG2003         582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK  661 (840)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             98501588988999999988610364445456643010236762379999998887647789999999888734853789


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             88899999998699899999999862917286
Q gi|254780592|r  208 IRQNLALVVGLQGRMKEAYSIASQELSPEEAT  239 (271)
Q Consensus       208 ~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~  239 (271)
                      .....|.++...|++..|...|+..-..-|.+
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003         662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999999875364888999999988758550


No 32 
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68  E-value=4.9e-14  Score=103.68  Aligned_cols=197  Identities=15%  Similarity=0.053  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC----------CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHH
Q ss_conf             9999999999985403685433----------117999999842019999999999999575787---999999999987
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNPRIS----------IPDPESLENMNHEQLLEVTSTIGLQYQSHTKNK---MIGIVYADVLRR   82 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~---~~~~~~a~~l~~   82 (271)
                      ..+++++++++++||++.+...          .....+.+.++.|++.+|...|+......|..+   .+.+.+|.++..
T Consensus         3 ~~~~~~~~~~~l~sCs~~~~~~~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~   82 (235)
T TIGR03302         3 LLILLLALLLLLAGCSSKKKKEADPVEERPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK   82 (235)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999987389976655555578999999999999987899999999999998689931379999999999997


Q ss_pred             HHCCHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHCHHHHHH---HHHHHHH
Q ss_conf             4100124466655663275210---0135555321000--------001125887642211000023356---6999999
Q gi|254780592|r   83 VGRTAQALAVMRQVAILYPEDQ---EVLAAYGKSLANA--------GYLDEGLDAINRAQRPDIPDWQLI---SAKGSVL  148 (271)
Q Consensus        83 ~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~~---~~lg~~~  148 (271)
                      .|++++|+..+++.+..+|+++   .++...|.++..+        +...+|...++..+...|+..-.-   ..+..+.
T Consensus        83 ~~~y~~A~~~~~~Fi~~yP~~~~~~ya~y~~a~s~~~~~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~~l~  162 (235)
T TIGR03302        83 SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYKQIDDSDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR  162 (235)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             64399999999999998877434999999987998873665445808999999999999988899657999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHH
Q ss_conf             974211111000000000000000124577765433223554359999999538985---47888999999986998999
Q gi|254780592|r  149 AQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLALVVGLQGRMKEA  225 (271)
Q Consensus       149 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~~~~~~g~~~eA  225 (271)
                      ..+.                    .--...|..|...|.+..|+..++.+++.-|+.   .+++..++.+|..+|..++|
T Consensus       163 ~~LA--------------------~~e~~ia~~Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A  222 (235)
T TIGR03302       163 NRLA--------------------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLA  222 (235)
T ss_pred             HHHH--------------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9999--------------------99999999999841709999999999986899851399999999999986998999


Q ss_pred             HHHHHHH
Q ss_conf             9999986
Q gi|254780592|r  226 YSIASQE  232 (271)
Q Consensus       226 ~~~~~~~  232 (271)
                      ....+..
T Consensus       223 ~~~~~~l  229 (235)
T TIGR03302       223 QDAAAVL  229 (235)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 33 
>KOG1840 consensus
Probab=99.67  E-value=3.3e-14  Score=104.77  Aligned_cols=218  Identities=18%  Similarity=0.161  Sum_probs=160.7

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC--------CCCCCH
Q ss_conf             999998420199999999999995--------7578799999999998741001244666556632--------752100
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQS--------HTKNKMIGIVYADVLRRVGRTAQALAVMRQVAIL--------YPEDQE  105 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~--------~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~--------~p~~~~  105 (271)
                      -+..+..+++|+.|+..++.+++.        +|.-......+|..|...+++++|+.+|++++.+        +|....
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840         205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             99999985207789999999999998703766689999999999999974428999999999999999853898789999


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHH--------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------
Q ss_conf             1355553210000011258876422110--------000233566999999974211111000000000000--------
Q gi|254780592|r  106 VLAAYGKSLANAGYLDEGLDAINRAQRP--------DIPDWQLISAKGSVLAQMGKHSEALIEYERALELSP--------  169 (271)
Q Consensus       106 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--------  169 (271)
                      ++..++..|...|++.+|...+++++..        .|.-...+..++.++...+++++|...+.+++++--        
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840         285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99889999860477577899999999999985036858999999899999988520568999999999999861464105


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC------C
Q ss_conf             000124577765433223554359999999538--------98547888999999986998999999998629------1
Q gi|254780592|r  170 NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMI--------GADSRIRQNLALVVGLQGRMKEAYSIASQELS------P  235 (271)
Q Consensus       170 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~------~  235 (271)
                      .....+.++|..|..+|++.+|.+.+++|+++.        +....+..+||..+.+.+++.+|...|..+..      +
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~  444 (508)
T KOG1840         365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP  444 (508)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             78989989999999944656799999999999886156767145478999999999834602289999999889998588


Q ss_pred             CCCCHHHH--HHHHHHHHHHHHHHHH
Q ss_conf             72866599--9999998321299999
Q gi|254780592|r  236 EEATRNIK--YIKSILSQRDPWKKIA  259 (271)
Q Consensus       236 ~~~~~~~~--~l~~~l~~~~~~~~~a  259 (271)
                      +..+-...  -|.+.+.+.+.++++-
T Consensus       445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~  470 (508)
T KOG1840         445 DHPDVTYTYLNLAALYRAQGNYEAAE  470 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99746899988999999735688899


No 34 
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65  E-value=4.4e-14  Score=103.99  Aligned_cols=201  Identities=17%  Similarity=0.124  Sum_probs=136.6

Q ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-----CHHHHH
Q ss_conf             433117999999842019999999999999575787999999999987410012446665566327521-----001355
Q gi|254780592|r   35 RISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED-----QEVLAA  109 (271)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~  109 (271)
                      +.+...-+..+.+-+.+.++|++.|-..++.+|...++++.+|..+++.|+.|+|+.+-+.++ ..|+.     ..++..
T Consensus        34 ~Lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~q  112 (389)
T COG2956          34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQ  112 (389)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
T ss_conf             553888867889861696369999999983581567898898889886350889999999885-2899866899999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHHHH
Q ss_conf             5532100000112588764221100002335669999999742111110000000000000001-----24577765433
Q gi|254780592|r  110 YGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESS-----IVSNIAMSYLL  184 (271)
Q Consensus       110 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~~~~~~~  184 (271)
                      +|.-|+..|-+|.|...|........-...+...+-.+|....++++|++..++..++.+.+..     .+..++..+..
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAIe~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             98999985646689999999734634328999999999998368999999999999718852125899999999999740


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             2235543599999995389854788899999998699899999999862917
Q gi|254780592|r  185 MGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       185 ~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      ..+.+.|...+++|++.+|.+.++-..+|.++...|+++.|.+.++.++..+
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~~Qn  244 (389)
T COG2956         193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN  244 (389)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             3118999999999986282001035454388875266699999999999849


No 35 
>KOG1840 consensus
Probab=99.65  E-value=1.2e-14  Score=107.51  Aligned_cols=193  Identities=17%  Similarity=0.149  Sum_probs=157.9

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--------CCCCH
Q ss_conf             999998420199999999999995--------75787999999999987410012446665566327--------52100
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQS--------HTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILY--------PEDQE  105 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~--------~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~--------p~~~~  105 (271)
                      -+.-+++.+++.+|+..|++++..        +|.-..++.++|..|...|++++|..++++++++.        |+-..
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840         247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999974428999999999999999853898789999998899998604775778999999999999850368589999


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHH--------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------
Q ss_conf             1355553210000011258876422110--------000233566999999974211111000000000000--------
Q gi|254780592|r  106 VLAAYGKSLANAGYLDEGLDAINRAQRP--------DIPDWQLISAKGSVLAQMGKHSEALIEYERALELSP--------  169 (271)
Q Consensus       106 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--------  169 (271)
                      .+..++.++..++++++|...+++++..        ++..+..+.++|.+|...|++++|.+.+++++....        
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840         327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             99899999988520568999999999999861464105789899899999999446567999999999998861567671


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             00012457776543322355435999999953----8---98547888999999986998999999998629
Q gi|254780592|r  170 NESSIVSNIAMSYLLMGDLKTAEEKLRFASQM----I---GADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       170 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      .....++++|..+.+.+++.+|...|.++..+    .   |+-...+.|||.+|..+|++++|+++.++++.
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840         407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             454789999999998346022899999998899985889974689998899999973568889999999989


No 36 
>KOG0495 consensus
Probab=99.65  E-value=2e-13  Score=99.97  Aligned_cols=215  Identities=12%  Similarity=0.036  Sum_probs=180.1

Q ss_pred             HHHCCCCCCCCH-HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf             540368543311-7999999842019999999999999575787999999999987410012446665566327521001
Q gi|254780592|r   28 SSCHLNPRISIP-DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEV  106 (271)
Q Consensus        28 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~  106 (271)
                      -.|.+.|..... +.-+-+....||..+|...+..+++.+|++.++|+..-.+.....++++|..+|.++-...| ..++
T Consensus       575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv  653 (913)
T KOG0495         575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERV  653 (913)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CCHH
T ss_conf             999738862268998888887517848899999999983898188898988875224648999999999750288-5126


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             35555321000001125887642211000023356699999997421111100000000000000012457776543322
Q gi|254780592|r  107 LAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMG  186 (271)
Q Consensus       107 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g  186 (271)
                      +.-.+....-+|+.++|...++++++.-|.....|..+|.++.+.++.+.|...|...+..-|.....|..++.+-...|
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495         654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             78776899986407999999999988487558999998689999877999999997025648898129999977888726


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             355435999999953898547888999999986998999999998629172866599
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      ....|...++++.-.+|.+...|.....+-...|+.++|...+.++|..-|+...+.
T Consensus       734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~Gn~~~a~~lmakALQecp~sg~LW  790 (913)
T KOG0495         734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW  790 (913)
T ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             526699998888734998626499999999974889999999999998687522268


No 37 
>KOG2003 consensus
Probab=99.63  E-value=7.5e-15  Score=108.68  Aligned_cols=212  Identities=14%  Similarity=0.081  Sum_probs=120.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             19999999999999575787999999999987410012446665566327521001355553210000011258876422
Q gi|254780592|r   51 QLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRA  130 (271)
Q Consensus        51 ~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  130 (271)
                      ++..|..+.+.++..|.-|+.++.+.|.+-...|++++|.+.+++++..+....++++.+|..+..+|+.++|+..|-+.
T Consensus       471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003         471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
T ss_conf             06677877787742022477775067754441586899999999997174288999997112398744789999999999


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             11000023356699999997421111100000000000000012457776543322355435999999953898547888
Q gi|254780592|r  131 QRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQ  210 (271)
Q Consensus       131 ~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  210 (271)
                      ...-.++.+.+..++.+|....+..+|++.+.++..+-|+++.++..+|.+|-+.|+..+|..++-......|.+.+...
T Consensus       551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie  630 (840)
T KOG2003         551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE  630 (840)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             99997029999999999998548799999999850158898899999998861036444545664301023676237999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             9999999869989999999986291728665999-999998321299999999
Q gi|254780592|r  211 NLALVVGLQGRMKEAYSIASQELSPEEATRNIKY-IKSILSQRDPWKKIAKAR  262 (271)
Q Consensus       211 ~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~-l~~~l~~~~~~~~~a~a~  262 (271)
                      -||.-|....=++.|+.+++++--..|....... +..-+++.++|++.-.-+
T Consensus       631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003         631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99988876477899999998887348537899999999987536488899999


No 38 
>PRK11788 hypothetical protein; Provisional
Probab=99.63  E-value=2e-13  Score=99.91  Aligned_cols=209  Identities=10%  Similarity=-0.008  Sum_probs=124.0

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             4201999999999999957578----799999999998741001244666556632752100135555321000001125
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKN----KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEG  123 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~----~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  123 (271)
                      +.|.++.|+..=+..+.+..-+    ..+++.+|.-|.+.|-+|+|...|.++++..+....++..+-.+|...++|++|
T Consensus        81 rrGE~dRAIriHq~Ll~rp~L~~~~r~~a~~ELa~Dy~~aGllDRAE~~f~~l~~~~~~~~~al~~Ll~iye~~~dW~~A  160 (389)
T PRK11788         81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEDDFAEGALRQLLTIYQQEKDWQKA  160 (389)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65608899999999972879899999999999999998677499999999999828542699999999999986459999


Q ss_pred             HHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887642211000-----023356699999997421111100000000000000012457776543322355435999999
Q gi|254780592|r  124 LDAINRAQRPDI-----PDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA  198 (271)
Q Consensus       124 ~~~~~~a~~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  198 (271)
                      .+..++......     ..+-.+..++.-....|+.+.|...+.+++..+|+.+.++..+|.++...|+++.|+..++++
T Consensus       161 i~~a~~L~~~~~~~~~~~iAhy~CElA~~~~~~~~~~~A~~~L~kAL~~dp~cvRA~lllg~l~~~~g~~~~Ai~~l~~i  240 (389)
T PRK11788        161 IEVAERLEKLGGDSLRKEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999998704765069999999999999987489999999999998748243418999999999879999999999999


Q ss_pred             HHCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             95389854-78889999999869989999999986291728665999999998321299
Q gi|254780592|r  199 SQMIGADS-RIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPWK  256 (271)
Q Consensus       199 l~~~p~~~-~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~  256 (271)
                      .+.+|... .+...|-.+|...|+.++....+++.+...|.......+-..+.+.++..
T Consensus       241 ~~q~p~~l~~vl~~L~~~y~~l~~~~~~~~~L~~~~~~~~~~~l~l~l~~~l~~~~g~~  299 (389)
T PRK11788        241 EEQDPEYLPEVLPKLMECYQALGDEAEGLEFLRRAVEEYPGADLLLALAQLLEEREGPE  299 (389)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH
T ss_conf             97395779999999999999828888999999999985899359999999999769999


No 39 
>KOG0495 consensus
Probab=99.63  E-value=3.9e-13  Score=98.15  Aligned_cols=214  Identities=14%  Similarity=0.085  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             79999998420199999999999995757879999999999874100124466655663275210013555532100000
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      +.-+...-+.|..++-...+++++..-|+.+..|+.++..+...|+..+|..++.++.+.+|++.+.|..-..+.....+
T Consensus       554 lra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e  633 (913)
T KOG0495         554 LRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE  633 (913)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf             99999988318699999999999973886226899888888751784889999999998389818889898887522464


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11258876422110000233566999999974211111000000000000000124577765433223554359999999
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFAS  199 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  199 (271)
                      ++.|...+.++....| ....|.-.+.+...+++.++|+..++.+++..|.....|.++|+++..+++.+.|...|..-+
T Consensus       634 ~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~  712 (913)
T KOG0495         634 LERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT  712 (913)
T ss_pred             HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8999999999750288-512678776899986407999999999988487558999998689999877999999997025


Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             5389854788899999998699899999999862917286659999999983212
Q gi|254780592|r  200 QMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDP  254 (271)
Q Consensus       200 ~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~  254 (271)
                      ..-|.....|..|+.+-...|+...|..+++++.-.+|.+..+..-..-.+.+-|
T Consensus       713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~G  767 (913)
T KOG0495         713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG  767 (913)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf             6488981299999778887265266999988887349986264999999999748


No 40 
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61  E-value=4.9e-13  Score=97.54  Aligned_cols=217  Identities=13%  Similarity=0.086  Sum_probs=161.7

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             999842019999999999999575787-9999999999874100124466655663275210013555532100000112
Q gi|254780592|r   44 LENMNHEQLLEVTSTIGLQYQSHTKNK-MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        44 ~~~~~~~~~~~A~~~~~~al~~~P~~~-~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      ......|+++....++.++.+..|++. .+.+..++.....|++++|.+.++++.+..|.++.++..+..+|...++|+.
T Consensus       126 rAA~~~g~~~~rd~yL~~A~e~~p~a~lav~lt~Ael~l~~~q~e~Ala~L~~L~~~~p~~~~VL~Ll~~~y~~~~dW~a  205 (398)
T PRK10747        126 EAAQQRGDEARANQHLERAAELAGNDTIPVEITRVRLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99998889899999999988858984889999999999977998999999999986199999999999999998745999


Q ss_pred             HHHHHHHHHHH------------------------------------------HCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58876422110------------------------------------------000233566999999974211111000
Q gi|254780592|r  123 GLDAINRAQRP------------------------------------------DIPDWQLISAKGSVLAQMGKHSEALIE  160 (271)
Q Consensus       123 A~~~~~~a~~~------------------------------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~  160 (271)
                      ....+....+.                                          ...++.....++..+...|++++|...
T Consensus       206 L~~LLp~L~K~~~l~~~e~~~L~~~a~~~ll~~~~~~~~~~~L~~~W~~lp~~~r~~~~l~~~ya~~Li~~g~~~~A~~l  285 (398)
T PRK10747        206 LLDIIPSMAKAHVGDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI  285 (398)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             99999999875799999999999999999999987323479999999868998756999999999999868996899999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             00000000000012457776543322355435999999953898547888999999986998999999998629172866
Q gi|254780592|r  161 YERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       161 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                      ..+.++..+++.-+ ..+|.+  ..++....+...++-++..|+++..+..||.++...+.+.+|..+++++++.+|...
T Consensus       286 l~~~Lkk~wd~~Lv-~ly~~l--~~~d~~~~l~~~e~wlk~~~~~~~Ll~aLGrL~~~~~lwgkA~~yle~sl~l~p~~~  362 (398)
T PRK10747        286 IIDGLKRQYDDRLV-LPIPRL--KTNNPEQLEKVLRQQIKQVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPDAY  362 (398)
T ss_pred             HHHHHHHCCCHHHH-HHHHHC--CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99998618998999-998756--779989999999998731899989999999999973509999999999986599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59999999983212999999997
Q gi|254780592|r  241 NIKYIKSILSQRDPWKKIAKARS  263 (271)
Q Consensus       241 ~~~~l~~~l~~~~~~~~~a~a~~  263 (271)
                      ....+..++.+.+.-.+.++.+.
T Consensus       363 ~~~~La~l~e~lg~~~~A~~~yr  385 (398)
T PRK10747        363 DYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999998599799999999


No 41 
>KOG1174 consensus
Probab=99.61  E-value=3.3e-14  Score=104.74  Aligned_cols=170  Identities=12%  Similarity=0.028  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             12446665566327521001355553210000011258876422110000233566999999974211111000000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                      ..|+.+.+++++.+|.+..++...|..+..+|+.++|...|+.+....|.+.+.|..+-.+|...|++.+|....++.+.
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~  396 (564)
T KOG1174         317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR  396 (564)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999998876158553367886139988545628899999998742514578998899999961408999999999999


Q ss_pred             CCCHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             0000001245777-654-33223554359999999538985478889999999869989999999986291728665999
Q gi|254780592|r  167 LSPNESSIVSNIA-MSY-LLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKY  244 (271)
Q Consensus       167 ~~p~~~~~~~~~~-~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~  244 (271)
                      ..|.+...+...| ... ....--+.|..++++++.+.|....+...+|......|++.++++++++.|...+....-..
T Consensus       397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~  476 (564)
T KOG1174         397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNH  476 (564)
T ss_pred             HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf             76531446766300011568506799999998420358860899999999998627654189999998742562089999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999998321299
Q gi|254780592|r  245 IKSILSQRDPWK  256 (271)
Q Consensus       245 l~~~l~~~~~~~  256 (271)
                      +.-.+.-.|-++
T Consensus       477 Lgd~~~A~Ne~Q  488 (564)
T KOG1174         477 LGDIMRAQNEPQ  488 (564)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999861079


No 42 
>KOG4162 consensus
Probab=99.61  E-value=1.1e-13  Score=101.59  Aligned_cols=198  Identities=20%  Similarity=0.143  Sum_probs=139.2

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH----------------
Q ss_conf             99998420199999999999995-7578799999999998741001244666556632752100----------------
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQS-HTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE----------------  105 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~-~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~----------------  105 (271)
                      +.++..+++.++|....+.+++. ...++.+|..+|.++...+++.+|+.+.+-+++-.|+|-.                
T Consensus       485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e  564 (799)
T KOG4162         485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDRE  564 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
T ss_conf             99999997699999999999871577648899999999962241677899999999974122200101110122116588


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780592|r  106 --------------------------------------------------------------------------------  105 (271)
Q Consensus       106 --------------------------------------------------------------------------------  105 (271)
                                                                                                      
T Consensus       565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~  644 (799)
T KOG4162         565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS  644 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             88888999999987311676654134566541211437656545303468988999865542156101674101578873


Q ss_pred             -------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             -------1355553210000011258876422110000233566999999974211111000000000000000124577
Q gi|254780592|r  106 -------VLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNI  178 (271)
Q Consensus       106 -------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  178 (271)
                             .|...+..+...++.+++...+.++...+|..+..|+..|.++...|..++|.+.|..++.++|+++.....+
T Consensus       645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al  724 (799)
T KOG4162         645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL  724 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             27899999999999988538832889999998750313389999864899987746899999999873288874778999


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             765433223554359--99999953898547888999999986998999999998629172866
Q gi|254780592|r  179 AMSYLLMGDLKTAEE--KLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       179 ~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                      |.++...|+...|..  .+..+++.+|.+.++|+.||.++..+|+.++|..+|..++..++.++
T Consensus       725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162         725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9999971884207789999999860887779999999999974666789999999986444798


No 43 
>PRK12370 invasion protein regulator; Provisional
Probab=99.61  E-value=2.3e-13  Score=99.53  Aligned_cols=189  Identities=12%  Similarity=0.014  Sum_probs=169.5

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             842019999999999999575787999999999987410---------01244666556632752100135555321000
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGR---------TAQALAVMRQVAILYPEDQEVLAAYGKSLANA  117 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  117 (271)
                      .+.++...|...|.+++..+|+...++-.++.+|.+.+.         ...|....+++++++|.++.++..+|.+..-.
T Consensus       272 ft~edn~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~~~d~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~  351 (553)
T PRK12370        272 YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf             18877999999999987339774466787899999763403688288999999999998743878878889999998723


Q ss_pred             CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00112588764221100002335669999999742111110000000000000001245777654332235543599999
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRF  197 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  197 (271)
                      |+++.+..+|+++...+|+.++.++..|..+...|+..+|.+..+.+++++|..+..+...+.+.......++|+....+
T Consensus       352 ~d~~~a~~~f~rA~~L~Pnsa~~~Y~~~W~~~maGr~~ea~~~i~~a~~LdP~~~~~~~~~l~~~~~~~~~d~a~~l~~~  431 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             55224479998764259984257999999999758689999999998835986520279999999984231079999998


Q ss_pred             HHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             99538985-4788899999998699899999999862917
Q gi|254780592|r  198 ASQMIGAD-SRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       198 al~~~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      .....|.+ +-+..-++.++..+|+.+.|.+...+ ++++
T Consensus       432 ~~~q~~~~~~~~~s~~~m~~~~~g~~~~a~~~~~~-~~~~  470 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE-ISTQ  470 (553)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-CCHH
T ss_conf             62507787836999999999733838999999985-1803


No 44 
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.61  E-value=2.2e-14  Score=105.87  Aligned_cols=177  Identities=15%  Similarity=0.007  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             99999999995757879999999999874100124466655663275210013555532100000112588764221100
Q gi|254780592|r   55 VTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPD  134 (271)
Q Consensus        55 A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  134 (271)
                      |.-.|.+++..+|+-++++..+|.-+.+.|+++.|.+.|+.+++++|++.-++.++|..+.--|+++.|...+.+....+
T Consensus        84 AR~DF~qAL~l~P~~adayN~LGiy~tq~~~fD~AyEAFDs~LEL~P~y~YA~lNRGIAlYYg~R~~LA~~D~~~fy~~d  163 (297)
T PRK11189         84 ARNDFSQALALRPDMADAYNYLGIYLTQEGEFDAAYEAFDSVLELDPTYDYAYLNRGIALYYGGRYDLAQDDLLAFYQDD  163 (297)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             98649989753998589999999999997119999999877772698734899830278874463788999999999609


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------H
Q ss_conf             002335669999999742111110000000000-00000124577765433223554359999999538985-------4
Q gi|254780592|r  135 IPDWQLISAKGSVLAQMGKHSEALIEYERALEL-SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD-------S  206 (271)
Q Consensus       135 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~  206 (271)
                      |+++---.++-.+-. .-+..+|...+..-.+. +.+.+  -+++...|  .|+..+ ...++++..-..++       .
T Consensus       164 p~DpYR~LWLYl~e~-~~d~~~A~~~L~~r~~~~~~~~W--~~~iV~~y--lg~ise-~~~~~~~~~~~~~n~~lAErLc  237 (297)
T PRK11189        164 PNDPYRALWLYLIEQ-KLDPKQAKENLKQRYEKLDKEQW--GWNIVDFY--LGKISE-EQLFERLKAGATDNTELAERLC  237 (297)
T ss_pred             CCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHH--HHHHHHHH--HCCCCH-HHHHHHHHHHCCCCHHHHHHHH
T ss_conf             998279999999981-16999999999999983571226--89999999--458999-9999999872737099999999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             7888999999986998999999998629172
Q gi|254780592|r  207 RIRQNLALVVGLQGRMKEAYSIASQELSPEE  237 (271)
Q Consensus       207 ~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~  237 (271)
                      ++++.||..+..+|+.++|..+|+-+++.+-
T Consensus       238 EaYFYLaK~~~~~G~~~~A~~~fKLAla~NV  268 (297)
T PRK11189        238 ETYFYLAKYYLSLGDLDEAANLFKLALANNV  268 (297)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             9999999999987998999999999870482


No 45 
>KOG0550 consensus
Probab=99.61  E-value=2.3e-14  Score=105.68  Aligned_cols=194  Identities=18%  Similarity=0.138  Sum_probs=136.9

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99842019999999999999575787999999999987410012446665566327521001355553210000011258
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      +.+.+..|.+|+..+..|++..|++...|.+.+.+++..|++++|.-..++.+.++|.....+...+.++..+++..+|.
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~  137 (486)
T KOG0550          58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE  137 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             17778668889988899998584003654416889998776752421166530057874101245224455567889899


Q ss_pred             HHH----------------------------------------------------HHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             876----------------------------------------------------4221100002335669999999742
Q gi|254780592|r  125 DAI----------------------------------------------------NRAQRPDIPDWQLISAKGSVLAQMG  152 (271)
Q Consensus       125 ~~~----------------------------------------------------~~a~~~~p~~~~~~~~lg~~~~~~~  152 (271)
                      +.+                                                    -..+..++.+.+.+..+|.++...+
T Consensus       138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~  217 (486)
T KOG0550         138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND  217 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
T ss_conf             88621016677653122200242346773256788741056543034316778888887516301678886153310232


Q ss_pred             HHHHHHHHHHHCCCCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHH
Q ss_conf             111110000000000000001------------245777654332235543599999995389854----7888999999
Q gi|254780592|r  153 KHSEALIEYERALELSPNESS------------IVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS----RIRQNLALVV  216 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~La~~~  216 (271)
                      +.+.++..|.+++.+.|+...            .+..-|.-..+.|++..|.++|..++.++|++.    ..|.+.|.+.
T Consensus       218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~  297 (486)
T KOG0550         218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN  297 (486)
T ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             06888888765202680256677676407899988750566763442467899887763379322224689998767664


Q ss_pred             HHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             9869989999999986291728
Q gi|254780592|r  217 GLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       217 ~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                      ..+|+..||+...+.+++.++.
T Consensus       298 ~rLgrl~eaisdc~~Al~iD~s  319 (486)
T KOG0550         298 IRLGRLREAISDCNEALKIDSS  319 (486)
T ss_pred             CCCCCCHHHHHHHHHHHHCCHH
T ss_conf             2067716566544666634798


No 46 
>KOG0548 consensus
Probab=99.60  E-value=6.8e-14  Score=102.80  Aligned_cols=205  Identities=13%  Similarity=0.125  Sum_probs=174.6

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHH
Q ss_conf             99984201999999999999957578799999999998741001244666556632752100-------13555532100
Q gi|254780592|r   44 LENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE-------VLAAYGKSLAN  116 (271)
Q Consensus        44 ~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~  116 (271)
                      .......++..|+..+.++++.+ .+...+.+.+-+|...|++.+.+....++++..-+...       ....+|..+..
T Consensus       232 naaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k  310 (539)
T KOG0548         232 NAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK  310 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99887454899999999998675-66678888988997313798744220889987578999999999999986311355


Q ss_pred             HCCHHHHHHHHHHHHH--------------------------HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             0001125887642211--------------------------00002335669999999742111110000000000000
Q gi|254780592|r  117 AGYLDEGLDAINRAQR--------------------------PDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN  170 (271)
Q Consensus       117 ~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~  170 (271)
                      .++++.+...|.+++.                          .+|.....-..-|+.+.+.|++..|+..|.+++..+|+
T Consensus       311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~  390 (539)
T KOG0548         311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE  390 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             77678899999998663258887877789999999988887318467899998778877535889999999999842984


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH--HHHHH
Q ss_conf             0012457776543322355435999999953898547888999999986998999999998629172866599--99999
Q gi|254780592|r  171 ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK--YIKSI  248 (271)
Q Consensus       171 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~--~l~~~  248 (271)
                      +...+.|.+.+|...|.+..|+...+++++++|+....|.+-|.++..+.+|+.|...|+.++..+|.+..+.  +-+++
T Consensus       391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~  470 (539)
T KOG0548         391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV  470 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             15788889999998731798998899987509318999999999999999899999999998734915589999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780592|r  249 L  249 (271)
Q Consensus       249 l  249 (271)
                      -
T Consensus       471 ~  471 (539)
T KOG0548         471 E  471 (539)
T ss_pred             H
T ss_conf             9


No 47 
>KOG1174 consensus
Probab=99.60  E-value=1.5e-13  Score=100.78  Aligned_cols=179  Identities=16%  Similarity=0.081  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             99999999957578799999999998741001244666556632752100135555321000001125887642211000
Q gi|254780592|r   56 TSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDI  135 (271)
Q Consensus        56 ~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  135 (271)
                      ...+-.....-|+|...+..+|.++...|++++|+-.|+++.-++|+....--.+|..+...|+++.-..........+.
T Consensus       218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~  297 (564)
T KOG1174         218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK  297 (564)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             88878765406760889988755653416756899999887507815555689999999860487678999999985220


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             02335669999999742111110000000000000001245777654332235543599999995389854788899999
Q gi|254780592|r  136 PDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALV  215 (271)
Q Consensus       136 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~  215 (271)
                      ....-|+.-+..++..++++.|...-++++..+|.+..++...|.++...++.++|+-.|+.|..+.|.+-++|..|.-.
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174         298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             23240234310145776689999999887615855336788613998854562889999999874251457899889999


Q ss_pred             HHHCCCHHHHHHHHHHHCC
Q ss_conf             9986998999999998629
Q gi|254780592|r  216 VGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       216 ~~~~g~~~eA~~~~~~~L~  234 (271)
                      |..+|++.||....+.++.
T Consensus       378 YLA~~~~kEA~~~An~~~~  396 (564)
T KOG1174         378 YLAQKRFKEANALANWTIR  396 (564)
T ss_pred             HHHHCCHHHHHHHHHHHHH
T ss_conf             9961408999999999999


No 48 
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.56  E-value=3.9e-14  Score=104.26  Aligned_cols=150  Identities=15%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHH
Q ss_conf             99998420199999999999995757879--99999999987410012446665566327521---00135555321000
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKM--IGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGKSLANA  117 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~--~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~  117 (271)
                      ..++.-...|.-+.+.+.+++..+|+..+  ++++.|.++...|++++|++.+++++++.|+.   ..++..+|.++...
T Consensus         6 ~ndnfidk~ftv~ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~   85 (172)
T PRK02603          6 RNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASN   85 (172)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             46411442489999999998158863368999997225777457999999999998727789620899997799999986


Q ss_pred             CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00112588764221100002335669999999742111110000000000000001245777654332235543599999
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRF  197 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  197 (271)
                      |++++|++.|.+++..+|+.+.+++++|.+|..+|+.....                    |..-.....+++|..++.+
T Consensus        86 G~~~kAie~Y~kALeiNP~~~~AlNNlgvIY~k~G~~a~~~--------------------~~~~~~~~~fdkAa~yw~k  145 (172)
T PRK02603         86 GEHDKALETYHQALELNPKQPSALNNIAVIYHKRGRKAEEA--------------------GDQDEAEAWFDKAAEYWKQ  145 (172)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHH
T ss_conf             99889999999999868997899999999999985999984--------------------5877899999999999999


Q ss_pred             HHHCCCCCHHHHHHH
Q ss_conf             995389854788899
Q gi|254780592|r  198 ASQMIGADSRIRQNL  212 (271)
Q Consensus       198 al~~~p~~~~~~~~L  212 (271)
                      |+++.|++--...++
T Consensus       146 AI~l~P~nyi~aqn~  160 (172)
T PRK02603        146 AIRLAPNNYIEAQNW  160 (172)
T ss_pred             HHHHCCCCHHHHHHH
T ss_conf             885099870999999


No 49 
>KOG2076 consensus
Probab=99.56  E-value=3.1e-13  Score=98.75  Aligned_cols=205  Identities=17%  Similarity=0.144  Sum_probs=147.9

Q ss_pred             CCCCCCCCHHHHHHH--HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH---
Q ss_conf             368543311799999--984201999999999999957578799999999998741001244666556632752100---
Q gi|254780592|r   31 HLNPRISIPDPESLE--NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE---  105 (271)
Q Consensus        31 ~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~---  105 (271)
                      +.+|..- ..+....  ..+.|.+.+|.-+|.+|++.+|.|-......+..|.+.|+...|...+.++++..|....   
T Consensus       201 HL~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~  279 (895)
T KOG2076         201 HLNPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI  279 (895)
T ss_pred             HCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             6699886-899999999986012999999999998608862289999999999847078889999999862890158999


Q ss_pred             ---HH-----------------------------------HHHHHHHHHHCCHHHHHHHHHHHH----------------
Q ss_conf             ---13-----------------------------------555532100000112588764221----------------
Q gi|254780592|r  106 ---VL-----------------------------------AAYGKSLANAGYLDEGLDAINRAQ----------------  131 (271)
Q Consensus       106 ---~~-----------------------------------~~~~~~~~~~g~~~~A~~~~~~a~----------------  131 (271)
                         ++                                   ..++.++.....++.+......-.                
T Consensus       280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~  359 (895)
T KOG2076         280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER  359 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99999999999971078999999997774103403562789999999986788876699999860136787165400220


Q ss_pred             ---------------------------------------------HH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------------------------------------------10---000233566999999974211111000000
Q gi|254780592|r  132 ---------------------------------------------RP---DIPDWQLISAKGSVLAQMGKHSEALIEYER  163 (271)
Q Consensus       132 ---------------------------------------------~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  163 (271)
                                                                   ..   -...++.+..++..+...|++..|+..+..
T Consensus       360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~  439 (895)
T KOG2076         360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP  439 (895)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             34555320147877775630576754320024434588898888883378455578999999999836558889999999


Q ss_pred             CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             00000000-01245777654332235543599999995389854788899999998699899999999862917
Q gi|254780592|r  164 ALELSPNE-SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       164 ~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      .....+.. ..+|..+|.+|...|.+++|+.+|++++...|++.+++..|+.++..+|++++|.+.+.+...++
T Consensus       440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076         440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf             86483335513469899999987428999999999995289860166319999976388889999871345899


No 50 
>KOG0548 consensus
Probab=99.55  E-value=3.1e-13  Score=98.75  Aligned_cols=177  Identities=18%  Similarity=0.190  Sum_probs=121.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             01999999999999957578799999999998741001244666556632752100135555321000001125887642
Q gi|254780592|r   50 EQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINR  129 (271)
Q Consensus        50 ~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  129 (271)
                      +++..|+.+|.+++...-.        ..++.+....++++...+...-.+|+-..-...-|..+...|+|..|+..|.+
T Consensus       312 ~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548         312 EDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             HHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7678899999998663258--------88787778999999998888731846789999877887753588999999999


Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             21100002335669999999742111110000000000000001245777654332235543599999995389854788
Q gi|254780592|r  130 AQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIR  209 (271)
Q Consensus       130 a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  209 (271)
                      ++..+|+++..+.+++.||..++.+..|+......++++|+....+...|.++....+|+.|...|+++++.+|.+.++.
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548         384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             98429841578888999999873179899889998750931899999999999999989999999999873491558999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             8999999986998999999998629
Q gi|254780592|r  210 QNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       210 ~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      ..+..+...+......+++.++++.
T Consensus       464 ~~~~rc~~a~~~~~~~ee~~~r~~~  488 (539)
T KOG0548         464 DGYRRCVEAQRGDETPEETKRRAMA  488 (539)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf             9999999986357988999876306


No 51 
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.55  E-value=1.5e-12  Score=94.57  Aligned_cols=100  Identities=18%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             99984201999999999999957578799999999998741001244666556632752100135555321000001125
Q gi|254780592|r   44 LENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEG  123 (271)
Q Consensus        44 ~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  123 (271)
                      ...-+.+++..|++.+++++.++|+|++.++.++.++...|++++|+..+++.....|+... +..++.++...|+.-.+
T Consensus       107 ka~Rn~kq~~~Al~ly~~~~~~~P~n~d~~lGlalt~Ada~~~~~Al~~~~~~~~~~p~~~~-~~~~aY~~~~~~~~~~a  185 (818)
T PRK10049        107 RAYRNLKQWQNSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAKQLVAGAPDVAN-LLALAYIYRLAGRHYDA  185 (818)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHCCCCHHH
T ss_conf             99863554677999999985029999407899999998638869999999998762897678-99999999862742999


Q ss_pred             HHHHHHHHHHHCHHHHHHHHH
Q ss_conf             887642211000023356699
Q gi|254780592|r  124 LDAINRAQRPDIPDWQLISAK  144 (271)
Q Consensus       124 ~~~~~~a~~~~p~~~~~~~~l  144 (271)
                      +..+.+++..+|++.+....+
T Consensus       186 L~~~~~al~~~P~~~~~~~~y  206 (818)
T PRK10049        186 LRAMTEALRRAPSSQEVLTEY  206 (818)
T ss_pred             HHHHHHHHHHCCCCHHHHHHH
T ss_conf             999999997689998999999


No 52 
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53  E-value=1.2e-12  Score=95.27  Aligned_cols=152  Identities=20%  Similarity=0.164  Sum_probs=117.6

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98420199999999999995757879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      ....|+-+++.....+....+|.+.+.+..+|....+.|++.+|+..+.++..+.|.+++++..+|.+|.+.|+++.|..
T Consensus        76 ~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~  155 (257)
T COG5010          76 LYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR  155 (257)
T ss_pred             HHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             77405555007887554014745499999999999980456889999999843699974666677899997367567789


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             764221100002335669999999742111110000000000000001245777654332235543599999
Q gi|254780592|r  126 AINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRF  197 (271)
Q Consensus       126 ~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  197 (271)
                      .|.++++..|.++....++|..+.-.|+.+.|...+..+....+.+..+..|++.....+|++++|.....+
T Consensus       156 ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         156 AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf             999999842588446665899999727798999999999867887638999899998404886777762420


No 53 
>KOG1127 consensus
Probab=99.53  E-value=2e-13  Score=99.88  Aligned_cols=186  Identities=15%  Similarity=0.086  Sum_probs=170.2

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             20199999999999995757879999999999874100124466655663275210013555532100000112588764
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAIN  128 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  128 (271)
                      ..+...|...|-+++..||.-.-++-.+|.+|+..-+..+|..+|+++-+++|.+.++....++.+.+..+++.|.....
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127         471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             41078899999999854642238999988999878989999999988863791234467888887631541889999998


Q ss_pred             HHHHHHCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             2211000023--35669999999742111110000000000000001245777654332235543599999995389854
Q gi|254780592|r  129 RAQRPDIPDW--QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS  206 (271)
Q Consensus       129 ~a~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  206 (271)
                      ++.+..|...  ..|..+|..|...++..+|+..|+.++..+|++...|..+|.+|...|++..|+..|.+|..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127         551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCCHHH
T ss_conf             87421547787752354043436852155589999998638906578899877887743762007776424574482768


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             7888999999986998999999998629
Q gi|254780592|r  207 RIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       207 ~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      -..+--|.+.-..|++.+|...+...+.
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127         631 YGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999876668999999999999


No 54 
>KOG1128 consensus
Probab=99.53  E-value=1.9e-13  Score=100.00  Aligned_cols=182  Identities=15%  Similarity=0.133  Sum_probs=146.5

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98420199999999999995757879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      +...|+-..|.....+.++ +|.++..|..+|++.....=+++|.++.+..      +..+...+|......++++++..
T Consensus       434 Y~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~  506 (777)
T KOG1128         434 YLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADK  506 (777)
T ss_pred             HHHHCCCCHHHHHHHHHHC-CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             9984230047899999826-9985126997531203848999999986565------57787752543335212899999


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             76422110000233566999999974211111000000000000000124577765433223554359999999538985
Q gi|254780592|r  126 AINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD  205 (271)
Q Consensus       126 ~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  205 (271)
                      +++..+..+|-....|+.+|.+..+.++.+.|...|...+...|++..+|+|+..+|+..++..+|-..+++|++-+-++
T Consensus       507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128         507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99987650663255787414899987636789999998962488820555236689999751488899999986147788


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             47888999999986998999999998629
Q gi|254780592|r  206 SRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       206 ~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      ..+|.|.-.+....|.+++|.+.+.+.+.
T Consensus       587 w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128         587 WQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             CEEEECHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             73220312345531408999999999987


No 55 
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=99.51  E-value=6.7e-12  Score=90.58  Aligned_cols=197  Identities=10%  Similarity=0.052  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHCCCCCC------CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCCHH
Q ss_conf             9999999998540368543------31179999998420199999999999995757879---99999999987410012
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRI------SIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKM---IGIVYADVLRRVGRTAQ   88 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~---~~~~~a~~l~~~g~~~~   88 (271)
                      +++++++++++||++....      ......+.+.++.|++.+|+..|+......|..+.   +.+.+|.++...|++++
T Consensus         8 ~~~~~l~l~l~gCs~~~~~~~~~~~~~~Y~~A~~~~~~~~y~~A~~~fe~l~~~yP~s~~A~qA~L~~ayayy~~~~y~~   87 (243)
T PRK10866          8 VAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPL   87 (243)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             99999999998768998888899999999999999987899999999999998689976789999999999873077899


Q ss_pred             HHHHHHHHHHCCCCCCHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             446665566327521001---35555321000001125887642211000023356699999997421111100000000
Q gi|254780592|r   89 ALAVMRQVAILYPEDQEV---LAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERAL  165 (271)
Q Consensus        89 A~~~~~~al~~~p~~~~~---~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~  165 (271)
                      |+..+++.++++|.++.+   +...|.++...+  +.....+...   ++.+           ..++...+|...|...+
T Consensus        88 A~~~~~rFi~lyP~~~~v~Ya~Yl~gl~~~~~~--~~~~~~~~~~---~~~~-----------rD~~~~~~A~~~f~~li  151 (243)
T PRK10866         88 AQAAIDRFMRLNPTHPNIDYVMYMRGLTNMALD--DSALQGFFGV---DRSD-----------RDPQHARAAFSDFSKLV  151 (243)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC--HHHHHHHHCC---CHHH-----------CCHHHHHHHHHHHHHHH
T ss_conf             999999999867899973899999889877401--3588887432---5643-----------07699999999999999


Q ss_pred             CCCCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHH
Q ss_conf             0000000-----------------124577765433223554359999999538985---47888999999986998999
Q gi|254780592|r  166 ELSPNES-----------------SIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLALVVGLQGRMKEA  225 (271)
Q Consensus       166 ~~~p~~~-----------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~~~~~~g~~~eA  225 (271)
                      ...|++.                 .--...|..|++.|.+..|+.-++..++.-|+.   .++...|+.+|..+|..++|
T Consensus       152 ~~yP~S~Ya~dA~~r~~~lrn~LA~~El~Va~fY~kr~~y~AAi~R~~~vi~~Yp~t~~~~eAL~~l~eaY~~Lgl~~~A  231 (243)
T PRK10866        152 RGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTKRGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQA  231 (243)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             87899845899999999999999999999999999926569999999999976899963399999999999986997899


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780592|r  226 YSIAS  230 (271)
Q Consensus       226 ~~~~~  230 (271)
                      ....+
T Consensus       232 ~~~~~  236 (243)
T PRK10866        232 DKVAK  236 (243)
T ss_pred             HHHHH
T ss_conf             99999


No 56 
>KOG0553 consensus
Probab=99.50  E-value=1.7e-13  Score=100.34  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=80.0

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      ....+..++|.+|+..|.+||+.+|+|+..+.+.|.+|.+.|+++.|+.-++.++.++|....+|..+|.+|..+|++++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553          88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             89999862599999999999845887626777899999986011789999999776290899999998799980673799


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             588764221100002335669999999742111
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKHS  155 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~  155 (271)
                      |.+.|++++.++|.+...+.++...-..++...
T Consensus       168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553         168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             999997643168884899988999998724787


No 57 
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.50  E-value=1.3e-13  Score=101.09  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             112588764221100002--335669999999742111110000000000000001---245777654332235543599
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPD--WQLISAKGSVLAQMGKHSEALIEYERALELSPNESS---IVSNIAMSYLLMGDLKTAEEK  194 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~~~~~~g~~~~A~~~  194 (271)
                      +..+...+.+++...|..  +..+...|..+...|++++|++.|.+++++.|++.+   ++.++|.+|...|++++|+.+
T Consensus        15 ftv~ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie~   94 (172)
T PRK02603         15 FTVMADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALET   94 (172)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             89999999998158863368999997225777457999999999998727789620899997799999986998899999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHCCCCCCC
Q ss_conf             999995389854788899999998699--------------899999999862917286
Q gi|254780592|r  195 LRFASQMIGADSRIRQNLALVVGLQGR--------------MKEAYSIASQELSPEEAT  239 (271)
Q Consensus       195 ~~~al~~~p~~~~~~~~La~~~~~~g~--------------~~eA~~~~~~~L~~~~~~  239 (271)
                      |++|++++|..+.++.++|.+|..+|+              +++|.+++.+++...|.+
T Consensus        95 Y~kALeiNP~~~~AlNNlgvIY~k~G~~a~~~~~~~~~~~~fdkAa~yw~kAI~l~P~n  153 (172)
T PRK02603         95 YHQALELNPKQPSALNNIAVIYHKRGRKAEEAGDQDEAEAWFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999868997899999999999985999984587789999999999999988509987


No 58 
>PRK12370 invasion protein regulator; Provisional
Probab=99.50  E-value=3.4e-12  Score=92.38  Aligned_cols=199  Identities=11%  Similarity=0.062  Sum_probs=161.9

Q ss_pred             CCCCHHHHHH--HHHHHHHHH---CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC---------HHHHHHHHHHHH
Q ss_conf             7578799999--999998741---00124466655663275210013555532100000---------112588764221
Q gi|254780592|r   66 HTKNKMIGIV--YADVLRRVG---RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY---------LDEGLDAINRAQ  131 (271)
Q Consensus        66 ~P~~~~~~~~--~a~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---------~~~A~~~~~~a~  131 (271)
                      .|.+.++|..  +|.-++...   +...|+.+|++++.++|+...++..++.||.+...         ...|.....+++
T Consensus       252 ~~~sLDA~~~Yl~Gl~hl~rft~edn~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~~~d~~~~~~~A~~~Aerav  331 (553)
T PRK12370        252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             89997489999978999973188779999999999873397744667878999997634036882889999999999987


Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             10000233566999999974211111000000000000000124577765433223554359999999538985478889
Q gi|254780592|r  132 RPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQN  211 (271)
Q Consensus       132 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  211 (271)
                      +.+|.++.+...+|.++.-.++++-+...|+++..++|+....++..|..+.-.|+..+|...++++++++|..+..+..
T Consensus       332 Eldp~dp~a~~~lg~~~~L~~d~~~a~~~f~rA~~L~Pnsa~~~Y~~~W~~~maGr~~ea~~~i~~a~~LdP~~~~~~~~  411 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             43878878889999998723552244799987642599842579999999997586899999999988359865202799


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999869989999999986291728-66599999999832129999999971
Q gi|254780592|r  212 LALVVGLQGRMKEAYSIASQELSPEEA-TRNIKYIKSILSQRDPWKKIAKARSN  264 (271)
Q Consensus       212 La~~~~~~g~~~eA~~~~~~~L~~~~~-~~~~~~l~~~l~~~~~~~~~a~a~~~  264 (271)
                      ...+..-....|+|+.....-.+..+. +.-+.-..+|.-.-.|..+.|+....
T Consensus       412 ~l~~~~~~~~~d~a~~l~~~~~~q~~~~~~~~~s~~~m~~~~~g~~~~a~~~~~  465 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK  465 (553)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999842310799999986250778783699999999973383899999998


No 59 
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49  E-value=3.9e-11  Score=85.91  Aligned_cols=224  Identities=12%  Similarity=0.072  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHC
Q ss_conf             7999999842019999999999999575787999999999987410012446665566327521-001355553210000
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED-QEVLAAYGKSLANAG  118 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g  118 (271)
                      ..++...+..|+|.+|+..+.++-+-.+.-.-+++.-+++-.++|+.+.+-.++.++.+..+++ ..+....++.+...|
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999987067389999999976534734089999999998863057789899999862589940889999999998678


Q ss_pred             CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------------------------
Q ss_conf             0112588764221100002335669999999742111110000000000-------------------------------
Q gi|254780592|r  119 YLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALEL-------------------------------  167 (271)
Q Consensus       119 ~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------------------------------  167 (271)
                      +++.|...........|.+++.......+|.+.|++........+..+.                               
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             86568988999987286886999999999998511899999889998735788299999999999999998736200147


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHCCCCC
Q ss_conf             -----------000001245777654332235543599999-------------------------------99538985
Q gi|254780592|r  168 -----------SPNESSIVSNIAMSYLLMGDLKTAEEKLRF-------------------------------ASQMIGAD  205 (271)
Q Consensus       168 -----------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~-------------------------------al~~~p~~  205 (271)
                                 .-+++.+...++.-+...|+.++|....+.                               .+...|++
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~  327 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED  327 (400)
T ss_pred             HHHHHHHCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             89999866497605834899999999975876889999999987445856999886518899367999999999839998


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4788899999998699899999999862917286659999999983212999999997
Q gi|254780592|r  206 SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPWKKIAKARS  263 (271)
Q Consensus       206 ~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a~a~~  263 (271)
                      +..+..||..+...+.|.+|...++.+++..++..+...+...+.+.+.-.+..+.+.
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             1499999999998417899999999997258974369999999998188688999999


No 60 
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49  E-value=5.2e-12  Score=91.26  Aligned_cols=217  Identities=10%  Similarity=0.046  Sum_probs=142.0

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCH
Q ss_conf             999998420199999999999995757879999999999874100124466655663275210-0135555321000001
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ-EVLAAYGKSLANAGYL  120 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~g~~  120 (271)
                      ++.-.+..|++..|...+.+..+....-.-.++.-|.+-.++|++++.-.+++++.+..|+.. .+....+......|++
T Consensus        90 ~Gl~~l~EG~~~~AeK~l~k~a~~~~~pllnyL~AArAA~~~g~~~~rd~yL~~A~e~~p~a~lav~lt~Ael~l~~~q~  169 (398)
T PRK10747         90 QALLKLAEGDYQQVEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRVRLQLARNEN  169 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH
T ss_conf             99999877799999999986343567748899999999998889899999999988858984889999999999977998


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC----------------------------
Q ss_conf             12588764221100002335669999999742111110000000000---00----------------------------
Q gi|254780592|r  121 DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALEL---SP----------------------------  169 (271)
Q Consensus       121 ~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p----------------------------  169 (271)
                      +.|...+.+.....|.++.....+..+|...++++.....+....+.   .+                            
T Consensus       170 e~Ala~L~~L~~~~p~~~~VL~Ll~~~y~~~~dW~aL~~LLp~L~K~~~l~~~e~~~L~~~a~~~ll~~~~~~~~~~~L~  249 (398)
T PRK10747        170 HAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHVGDEEHRAMLEQQAWIGLMDQARADNGSEGLR  249 (398)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             99999999998619999999999999999874599999999999875799999999999999999999987323479999


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             -----------000124577765433223554359999999538985478889999999869989999999986291728
Q gi|254780592|r  170 -----------NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       170 -----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                                 .++.....++..+...|+.++|...+.+.+...++..-+ ..++.+  ..++..+.....++-+...|.
T Consensus       250 ~~W~~lp~~~r~~~~l~~~ya~~Li~~g~~~~A~~ll~~~Lkk~wd~~Lv-~ly~~l--~~~d~~~~l~~~e~wlk~~~~  326 (398)
T PRK10747        250 NWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIIDGLKRQYDDRLV-LPIPRL--KTNNPEQLEKVLRQQIKQVGD  326 (398)
T ss_pred             HHHHHCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH-HHHHHC--CCCCHHHHHHHHHHHHHCCCC
T ss_conf             99986899875699999999999986899689999999998618998999-998756--779989999999998731899


Q ss_pred             CHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             66599999999-832129999999
Q gi|254780592|r  239 TRNIKYIKSIL-SQRDPWKKIAKA  261 (271)
Q Consensus       239 ~~~~~~l~~~l-~~~~~~~~~a~a  261 (271)
                      ++.+....+.+ .+.+.|.++..+
T Consensus       327 ~~~Ll~aLGrL~~~~~lwgkA~~y  350 (398)
T PRK10747        327 RPLLWSTLGQSLMKHGEWQEASLA  350 (398)
T ss_pred             CHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             989999999999973509999999


No 61 
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.49  E-value=2.3e-11  Score=87.31  Aligned_cols=194  Identities=13%  Similarity=0.076  Sum_probs=121.9

Q ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             33117999999842019999999999999575787999999999987410012446665566327521001355553210
Q gi|254780592|r   36 ISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLA  115 (271)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  115 (271)
                      ........+-....|++..|+.++++..+..|.+.......-.++.=.|+-.+++.++++....-|-+..++..++..+.
T Consensus        31 ~d~~yd~~Ii~AR~G~~~~al~~L~~~~~~~~~~~~~v~D~l~i~sWag~d~~v~~~~~~~~~~~~lp~~~l~~~Aka~R  110 (818)
T PRK10049         31 ADTAYDALIIEARAGDTAPALSWLQQKSKAGALSNGQVADWLQIALWAGQDQEVITVYERYQSHMQLPARGLAAAARAYR  110 (818)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             25689999999864882368999998753387667889889999853477779999999618888899799999999986


Q ss_pred             HHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00001125887642211000023356699999997421111100000000000000012457776543322355435999
Q gi|254780592|r  116 NAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKL  195 (271)
Q Consensus       116 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  195 (271)
                      ..++|+.|++.+++++...|.++..+..++..+...|+.+.|...+.+.....|+... +..++.++...|+.-.++..+
T Consensus       111 n~kq~~~Al~ly~~~~~~~P~n~d~~lGlalt~Ada~~~~~Al~~~~~~~~~~p~~~~-~~~~aY~~~~~~~~~~aL~~~  189 (818)
T PRK10049        111 NLKQWQNSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAKQLVAGAPDVAN-LLALAYIYRLAGRHYDALRAM  189 (818)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHCCCCHHHHHHH
T ss_conf             3554677999999985029999407899999998638869999999998762897678-999999998627429999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99995389854788899999998699899999999
Q gi|254780592|r  196 RFASQMIGADSRIRQNLALVVGLQGRMKEAYSIAS  230 (271)
Q Consensus       196 ~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~  230 (271)
                      ++++...|++.++...+-.++...+-...|.....
T Consensus       190 ~~al~~~P~~~~~~~~y~~al~~~~i~~pA~~l~~  224 (818)
T PRK10049        190 TEALRRAPSSQEVLTEYVQALQRNRIAAPALRLAK  224 (818)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99997689998999999999986699718999765


No 62 
>KOG4162 consensus
Probab=99.48  E-value=4.9e-11  Score=85.28  Aligned_cols=212  Identities=16%  Similarity=0.096  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             99999999999995757879999999999874100124466655663275-21001355553210000011258876422
Q gi|254780592|r   52 LLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYP-EDQEVLAAYGKSLANAGYLDEGLDAINRA  130 (271)
Q Consensus        52 ~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  130 (271)
                      -.+++..++++++.+|.||.+.+.++.-|...++.+.|..+.++++++++ ++..+|..++.++...+++.+|+...+.+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162         460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999861899824899999999999769999999999987157764889999999996224167789999999


Q ss_pred             HHHHCHHH------------------------------------------------------------------------
Q ss_conf             11000023------------------------------------------------------------------------
Q gi|254780592|r  131 QRPDIPDW------------------------------------------------------------------------  138 (271)
Q Consensus       131 ~~~~p~~~------------------------------------------------------------------------  138 (271)
                      +...|.+.                                                                        
T Consensus       540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l  619 (799)
T KOG4162         540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL  619 (799)
T ss_pred             HHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99741222001011101221165888888899999998731167665413456654121143765654530346898899


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             -------------------------------3566999999974211111000000000000000124577765433223
Q gi|254780592|r  139 -------------------------------QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGD  187 (271)
Q Consensus       139 -------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~  187 (271)
                                                     ..|...+..+...++.+++..++.++....|.....++..|..+..+|+
T Consensus       620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~  699 (799)
T KOG4162         620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ  699 (799)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             98655421561016741015788732789999999999998853883288999999875031338999986489998774


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             5543599999995389854788899999998699899999--999862917286659999-999983212999999997
Q gi|254780592|r  188 LKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYS--IASQELSPEEATRNIKYI-KSILSQRDPWKKIAKARS  263 (271)
Q Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~--~~~~~L~~~~~~~~~~~l-~~~l~~~~~~~~~a~a~~  263 (271)
                      ..+|...|..|+.++|++..+...+|.++...|+..-|..  .+..++..+|.+...+|. +.+..+++..++.+..+.
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162         700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             6899999999873288874778999999997188420778999999986088777999999999997466678999999


No 63 
>KOG1156 consensus
Probab=99.48  E-value=1.4e-11  Score=88.55  Aligned_cols=201  Identities=15%  Similarity=0.100  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             79999998420199999999999995757879999999999874100124466655663275210013555532100000
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      ..++..-.+.+||..-....++.+++.|++++.+-..|..+...|+.++|..+...++..++...-.|..+|.++....+
T Consensus        11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~   90 (700)
T KOG1156          11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK   90 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999998877888689999999873776422578604323024661889999987740276655107888888741175


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11258876422110000233566999999974211111000000000000000124577765433223554359999999
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFAS  199 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  199 (271)
                      |++|..+|+.++..+|++.+.+..++.+-.+.++++.....-...++..|.....|...+.++...|++..|...++.-.
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156          91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999833997299999999999999861618888999977224537999999999999877887789999999


Q ss_pred             HCC---CCC---------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             538---985---------------------------------------47888999999986998999999998629172
Q gi|254780592|r  200 QMI---GAD---------------------------------------SRIRQNLALVVGLQGRMKEAYSIASQELSPEE  237 (271)
Q Consensus       200 ~~~---p~~---------------------------------------~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~  237 (271)
                      +..   |+.                                       ......-|.++..+|+.++|..+++.-+...|
T Consensus       171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP  250 (700)
T KOG1156         171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP  250 (700)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             86204998888999999899999999724688999999852067777778864288899987418768999999986293


Q ss_pred             CCH
Q ss_conf             866
Q gi|254780592|r  238 ATR  240 (271)
Q Consensus       238 ~~~  240 (271)
                      .+-
T Consensus       251 dn~  253 (700)
T KOG1156         251 DNL  253 (700)
T ss_pred             HHH
T ss_conf             367


No 64 
>KOG1128 consensus
Probab=99.48  E-value=2.7e-12  Score=92.99  Aligned_cols=203  Identities=13%  Similarity=0.052  Sum_probs=165.1

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98420199999999999995757879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      .++-|=..+|+..+.+        ++.|-....+|...|+..+|..+..+-++ .|.++..|..+|++....--|++|.+
T Consensus       408 l~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawE  478 (777)
T KOG1128         408 LLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWE  478 (777)
T ss_pred             HHHHCHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             9970107899999984--------87778789999984230047899999826-99851269975312038489999999


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             76422110000233566999999974211111000000000000000124577765433223554359999999538985
Q gi|254780592|r  126 AINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD  205 (271)
Q Consensus       126 ~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  205 (271)
                      ..+....      .+...+|......++++++...++.+++.+|-....|++.|.+.++.+++..|..+|...+...|++
T Consensus       479 lsn~~sa------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~  552 (777)
T KOG1128         479 LSNYISA------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN  552 (777)
T ss_pred             HHHHHHH------HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8656557------7877525433352128999999998765066325578741489998763678999999896248882


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             47888999999986998999999998629172866599999999-83212999999997
Q gi|254780592|r  206 SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSIL-SQRDPWKKIAKARS  263 (271)
Q Consensus       206 ~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l-~~~~~~~~~a~a~~  263 (271)
                      .++|.|++..|...|+..+|...++.+++-+..+-.+.-.-.++ ..-+.|+++-+++.
T Consensus       553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128         553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCHHHHHHHHH
T ss_conf             05552366899997514888999999861477887322031234553140899999999


No 65 
>KOG0624 consensus
Probab=99.47  E-value=4.9e-12  Score=91.45  Aligned_cols=165  Identities=17%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHH---H----------
Q ss_conf             999998420199999999999995757879999999999874100124466655663275210013---5----------
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVL---A----------  108 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~---~----------  108 (271)
                      .+..++.-|....|+..+.+.++..|+-..+.+..|.++..+|++++|..-|+++++.+|++....   .          
T Consensus        78 RaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~  157 (504)
T KOG0624          78 RATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV  157 (504)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             77777652577400330899986183188888872203553252888987999997259873026889988776899999


Q ss_pred             --HHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             --555321000001125887642211000023356699999997421111100000000000000012457776543322
Q gi|254780592|r  109 --AYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMG  186 (271)
Q Consensus       109 --~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g  186 (271)
                        .....+...|+...+.+.....++..|.++..+..++.||...|+...|+...+.+-++..++.+.++.+..++...|
T Consensus       158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg  237 (504)
T KOG0624         158 LVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG  237 (504)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999988438746559999988885371336899999888885386888888899987404665388898998997661


Q ss_pred             HHHHHHHHHHHHHHCCCCCH
Q ss_conf             35543599999995389854
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGADS  206 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~~  206 (271)
                      +.+.++...++.++++|++.
T Consensus       238 d~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624         238 DAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HHHHHHHHHHHHHCCCCCHH
T ss_conf             18878999999980695333


No 66 
>KOG1127 consensus
Probab=99.47  E-value=6.9e-12  Score=90.50  Aligned_cols=208  Identities=14%  Similarity=0.080  Sum_probs=159.9

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             4201999999999999957578799999999998-----74100124466655663275210013555532100000112
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLR-----RVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      +...+.++.-.+.+++++.-+-....+..+..+.     .+.+...|...|-+++.++|....++..+|.+|....+-..
T Consensus       431 nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~R  510 (1238)
T KOG1127         431 NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKR  510 (1238)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             76266676677777677642499999987779999999964107889999999985464223899998899987898999


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5887642211000023356699999997421111100000000000000--01245777654332235543599999995
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNE--SSIVSNIAMSYLLMGDLKTAEEKLRFASQ  200 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~  200 (271)
                      |...|+++...|+.+.+.+...+..|....+.+.|........+..|..  ...|...|..|...++...|+..|+.|+.
T Consensus       511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR  590 (1238)
T KOG1127         511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR  590 (1238)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             99999888637912344678888876315418899999988742154778775235404343685215558999999863


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             3898547888999999986998999999998629172866599999999832129
Q gi|254780592|r  201 MIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPW  255 (271)
Q Consensus       201 ~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~  255 (271)
                      .+|.+.+.|..||.+|...|++.-|.+++.++.-.+|.+-...+-.+.+.+..|.
T Consensus       591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk  645 (1238)
T KOG1127         591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK  645 (1238)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8906578899877887743762007776424574482768999999999987666


No 67 
>KOG3060 consensus
Probab=99.46  E-value=2.2e-11  Score=87.43  Aligned_cols=162  Identities=22%  Similarity=0.150  Sum_probs=90.5

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999874100124466655663275210013555532100000112588764221100002335669999999742111
Q gi|254780592|r   76 YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHS  155 (271)
Q Consensus        76 ~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~  155 (271)
                      ...+....|+.+-|-.+++++....|+..++....|..+...|++++|.+.|+..+..+|.+...+-..-.+...+|+.-
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l  137 (289)
T KOG3060          58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL  137 (289)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             99999983313789999999998678970679899999998613545999999984468631489999999999718857


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHH
Q ss_conf             1100000000000000012457776543322355435999999953898547888999999986998---9999999986
Q gi|254780592|r  156 EALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRM---KEAYSIASQE  232 (271)
Q Consensus       156 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~---~eA~~~~~~~  232 (271)
                      +|++.+...++..+++.++|..++.+|+..|+++.|.-++++.+=..|.++..+..||.++.-+|-.   .-|.++|.++
T Consensus       138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060         138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA  217 (289)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999835769999999999976768999999999999759871899999999999984188899999999999


Q ss_pred             CCCCC
Q ss_conf             29172
Q gi|254780592|r  233 LSPEE  237 (271)
Q Consensus       233 L~~~~  237 (271)
                      +...+
T Consensus       218 lkl~~  222 (289)
T KOG3060         218 LKLNP  222 (289)
T ss_pred             HHHCH
T ss_conf             87274


No 68 
>KOG0553 consensus
Probab=99.45  E-value=2.3e-12  Score=93.41  Aligned_cols=117  Identities=19%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999874100124466655663275210013555532100000112588764221100002335669999999742
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG  152 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~  152 (271)
                      +..-|.-++..++|.+|+..|.++++++|.++..+.+.+.+|.++|.++.|.+.++.++..||..+.+|..+|..|..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553          84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf             99988999986259999999999984588762677789999998601178999999977629089999999879998067


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1111100000000000000012457776543322355
Q gi|254780592|r  153 KHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLK  189 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~  189 (271)
                      ++++|++.|+++++++|++.....++..+-...+...
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553         164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             3799999997643168884899988999998724787


No 69 
>KOG2376 consensus
Probab=99.45  E-value=7.9e-12  Score=90.17  Aligned_cols=193  Identities=21%  Similarity=0.190  Sum_probs=145.6

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99842019999999999999575787999999999987410012446665566327521001355553210000011258
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      -+...++|++|+....+.+...|+++.++.-.-.++.+.++|++|+.+.++-....-.+. ..+..+.|.++++..++|+
T Consensus        21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Deal   99 (652)
T KOG2376          21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEAL   99 (652)
T ss_pred             HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCH-HHHHHHHHHHHCCCHHHHH
T ss_conf             733533799999999888725899476686667642036679999999985111431111-3578888998705678899


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------------------CC-HHHH
Q ss_conf             8764221100002335669999999742111110000000000------------------------------00-0001
Q gi|254780592|r  125 DAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALEL------------------------------SP-NESS  173 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~------------------------------~p-~~~~  173 (271)
                      ..++   ..++.+.......+.++.+++++++|.+.|+...+.                              .| ++.+
T Consensus       100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sye  176 (652)
T KOG2376         100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYE  176 (652)
T ss_pred             HHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             9875---0355661889999999998753899999999998558705789999789998874047798745588854299


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             2457776543322355435999999953-------8985--------478889999999869989999999986291728
Q gi|254780592|r  174 IVSNIAMSYLLMGDLKTAEEKLRFASQM-------IGAD--------SRIRQNLALVVGLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       174 ~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~--------~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                      .++|.+.++...|+|.+|++.+++++.+       +..+        ..++..|+.++..+|+..||.+.|...+..++.
T Consensus       177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~  256 (652)
T KOG2376         177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA  256 (652)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999985034899999999999988876314665306688887789999999999943308789999999872688


Q ss_pred             CHH
Q ss_conf             665
Q gi|254780592|r  239 TRN  241 (271)
Q Consensus       239 ~~~  241 (271)
                      +..
T Consensus       257 D~~  259 (652)
T KOG2376         257 DEP  259 (652)
T ss_pred             CCH
T ss_conf             822


No 70 
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.43  E-value=1.6e-11  Score=88.25  Aligned_cols=135  Identities=20%  Similarity=0.120  Sum_probs=114.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             52100135555321000001125887642211000023356699999997421111100000000000000012457776
Q gi|254780592|r  101 PEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM  180 (271)
Q Consensus       101 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  180 (271)
                      |....++...+..++..|.+++|+..++..+...|+++-.+...+.++...++..+|.+.+++++...|+....+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             36537788899999983270157899999998489987999999999987588677999999998408985079999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             5433223554359999999538985478889999999869989999999986291
Q gi|254780592|r  181 SYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSP  235 (271)
Q Consensus       181 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~  235 (271)
                      +|+..|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+...+..
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9995699789999999986448777369999999999847617799999999986


No 71 
>KOG3060 consensus
Probab=99.42  E-value=1.6e-11  Score=88.27  Aligned_cols=180  Identities=14%  Similarity=0.084  Sum_probs=163.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             99999984201999999999999957578799999999998741001244666556632752100135555321000001
Q gi|254780592|r   41 PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL  120 (271)
Q Consensus        41 ~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  120 (271)
                      .-.+..+..+...-|...++..-..-|+++.+....|..+...|++++|+++++..++-+|.+.-.+...-.+...+|+.
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~  136 (289)
T KOG3060          57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN  136 (289)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999998331378999999999867897067989999999861354599999998446863148999999999971885


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_conf             125887642211000023356699999997421111100000000000000012457776543322---35543599999
Q gi|254780592|r  121 DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMG---DLKTAEEKLRF  197 (271)
Q Consensus       121 ~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~  197 (271)
                      .+|++.+...++.-+.+.++|..++.+|...|++++|.-+++..+-..|.++..+..++..+..+|   ++..|..+|.+
T Consensus       137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~  216 (289)
T KOG3060         137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER  216 (289)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999983576999999999997676899999999999975987189999999999998418889999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             99538985478889999999869
Q gi|254780592|r  198 ASQMIGADSRIRQNLALVVGLQG  220 (271)
Q Consensus       198 al~~~p~~~~~~~~La~~~~~~g  220 (271)
                      ++++.|.+.+.++.+-.+-...-
T Consensus       217 alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060         217 ALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             98727473899999999899999


No 72 
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.42  E-value=3e-12  Score=92.73  Aligned_cols=121  Identities=15%  Similarity=0.089  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC---HHHHHHH
Q ss_conf             0199999999999995757879999999999874100124466655663275210013555532100000---1125887
Q gi|254780592|r   50 EQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY---LDEGLDA  126 (271)
Q Consensus        50 ~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~  126 (271)
                      ...+..+..++..++.+|+|.+.|+.+|.+|...|+++.|+..|++++++.|+++.++..++.++...++   .+++...
T Consensus        61 q~~e~~~~~L~~rL~~~Pdd~~gW~~LGr~y~~~~~~~~A~~Ay~kA~~L~p~~~~il~~yA~aL~~~~~~~~t~~~~~l  140 (206)
T PRK10370         61 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNAYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM  140 (206)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             41799999999999839988899999999999768989999999999975799878999999999987598776899999


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             64221100002335669999999742111110000000000000
Q gi|254780592|r  127 INRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN  170 (271)
Q Consensus       127 ~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~  170 (271)
                      +++++..+|.+..++..+|......++|..|+...++.++..|.
T Consensus       141 L~~AL~lDp~~~~AL~Lla~~AFe~~dY~~AI~~Wq~lL~~~~p  184 (206)
T PRK10370        141 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKLLDLNSP  184 (206)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf             99998749897889999999999826499999999999845799


No 73 
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.42  E-value=1e-12  Score=95.61  Aligned_cols=98  Identities=27%  Similarity=0.363  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             56699999997421111100000000000000012457776543322355435999999953898547888999999986
Q gi|254780592|r  140 LISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQ  219 (271)
Q Consensus       140 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~  219 (271)
                      .+..+|.++...|++++|+..|.++++..|+++.++..+|.++...|++++|+.+|+++++.+|.+..++.++|.++..+
T Consensus         2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             89999999998499999999999999859998999999999999859858999999999986989899999999999994


Q ss_pred             CCHHHHHHHHHHHCCCCC
Q ss_conf             998999999998629172
Q gi|254780592|r  220 GRMKEAYSIASQELSPEE  237 (271)
Q Consensus       220 g~~~eA~~~~~~~L~~~~  237 (271)
                      |++++|...+++++..+|
T Consensus        82 ~~~~~A~~~~~~al~~~P   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             CCHHHHHHHHHHHHHHCC
T ss_conf             999999999999997490


No 74 
>KOG0550 consensus
Probab=99.42  E-value=2.1e-12  Score=93.62  Aligned_cols=167  Identities=18%  Similarity=0.166  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHH------------
Q ss_conf             99999999987410012446665566327521001355553210000011258876422110000233------------
Q gi|254780592|r   72 IGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQ------------  139 (271)
Q Consensus        72 ~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~------------  139 (271)
                      +-+.-+.++...|++++|....-..+++++.+..++...|.++...++.+.+..++++++..+|....            
T Consensus       171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le  250 (486)
T KOG0550         171 AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE  250 (486)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             88741056543034316778888887516301678886153310232068888887652026802566776764078999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             5669999999742111110000000000000001----245777654332235543599999995389854788899999
Q gi|254780592|r  140 LISAKGSVLAQMGKHSEALIEYERALELSPNESS----IVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALV  215 (271)
Q Consensus       140 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~  215 (271)
                      .+-..|+...+.|++..|.+.|..++.++|.+..    .+.+.+......|+.++|+..+..|++++|....++...|.+
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550         251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             88750566763442467899887763379322224689998767664206771656654466663479888999998898


Q ss_pred             HHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99869989999999986291728
Q gi|254780592|r  216 VGLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       216 ~~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                      +..+++|.+|.+.+++++..+..
T Consensus       331 ~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550         331 HLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88998999999999999863056


No 75 
>KOG1156 consensus
Probab=99.42  E-value=8.7e-12  Score=89.91  Aligned_cols=177  Identities=13%  Similarity=0.051  Sum_probs=126.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             99999984201999999999999957578799999999998741001244666556632752100135555321000001
Q gi|254780592|r   41 PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL  120 (271)
Q Consensus        41 ~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  120 (271)
                      ......-.-|+-++|.+..+..+..||.+...|-.+|.+++...++++|+.+|..|+...|++...+..++....+++++
T Consensus        46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156          46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             HCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             60432302466188999998774027665510788888874117589999999999833997299999999999999861


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---C----------------------------
Q ss_conf             125887642211000023356699999997421111100000000000---0----------------------------
Q gi|254780592|r  121 DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELS---P----------------------------  169 (271)
Q Consensus       121 ~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p----------------------------  169 (271)
                      +.....-.+.+...|.....|...+....-.|++..|....+......   |                            
T Consensus       126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al  205 (700)
T KOG1156         126 EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL  205 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             61888899997722453799999999999987788778999999986204998888999999899999999724688999


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             -----------000124577765433223554359999999538985478889999999
Q gi|254780592|r  170 -----------NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVG  217 (271)
Q Consensus       170 -----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~  217 (271)
                                 +........+.++...+++++|...+...+..+|++...+..+-.++.
T Consensus       206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg  264 (700)
T KOG1156         206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG  264 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99985206777777886428889998741876899999998629336789999999999


No 76 
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.41  E-value=1.9e-11  Score=87.76  Aligned_cols=156  Identities=20%  Similarity=0.147  Sum_probs=138.1

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             99957578799999999998741001244666556632752100135555321000001125887642211000023356
Q gi|254780592|r   62 QYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLI  141 (271)
Q Consensus        62 al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  141 (271)
                      ....+|.-+.+++..+..++..|++++|...++.++...|+++..+...+.++...++..+|.+.+++++..+|...-.+
T Consensus       298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~  377 (484)
T COG4783         298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ  377 (484)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             97617365377888999999832701578999999984899879999999999875886779999999984089850799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             69999999742111110000000000000001245777654332235543599999995389854788899999998699
Q gi|254780592|r  142 SAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGR  221 (271)
Q Consensus       142 ~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~  221 (271)
                      .++|..+...|++.+|+..+.......|+++..|..++.+|..+|+..++..                 ..|..+...|+
T Consensus       378 ~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~  440 (484)
T COG4783         378 LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGR  440 (484)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH-----------------HHHHHHHHCCC
T ss_conf             9999999956997899999999864487773699999999998476177999-----------------99999986788


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             8999999998629
Q gi|254780592|r  222 MKEAYSIASQELS  234 (271)
Q Consensus       222 ~~eA~~~~~~~L~  234 (271)
                      +++|+..+.++..
T Consensus       441 ~~~A~~~l~~A~~  453 (484)
T COG4783         441 LEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             7899999999998


No 77 
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38  E-value=1.1e-10  Score=83.04  Aligned_cols=212  Identities=9%  Similarity=-0.002  Sum_probs=173.9

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             842019999999999999575787-----999999999987410012446665566327521001355553210000011
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNK-----MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD  121 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~-----~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  121 (271)
                      -+.|..+.|+..=+ .+-..|+-+     -++..+|.-|+..|-+|.|..+|..+++....-..++..+-.+|....+|+
T Consensus        80 RsRGEvDRAIRiHQ-~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~  158 (389)
T COG2956          80 RSRGEVDRAIRIHQ-TLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWE  158 (389)
T ss_pred             HHCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86350889999999-88528998668999999999899998564668999999973463432899999999999836899


Q ss_pred             HHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2588764221100002-----33566999999974211111000000000000000124577765433223554359999
Q gi|254780592|r  122 EGLDAINRAQRPDIPD-----WQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLR  196 (271)
Q Consensus       122 ~A~~~~~~a~~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  196 (271)
                      +|.+..++.....+..     +..+..++..+....+.+.|...+.+++..+|+...+-..+|.++...|+|..|++.++
T Consensus       159 KAIe~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e  238 (389)
T COG2956         159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALE  238 (389)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999997188521258999999999997403118999999999986282001035454388875266699999999


Q ss_pred             HHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999538985-478889999999869989999999986291728665999999998321299999
Q gi|254780592|r  197 FASQMIGAD-SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPWKKIA  259 (271)
Q Consensus       197 ~al~~~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a  259 (271)
                      .+++.+|+. +++...|..+|..+|+.++....+.++....+...-...+.-++...+|..++.
T Consensus       239 ~v~~Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l~e~~eG~~~Aq  302 (389)
T COG2956         239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQ  302 (389)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHH
T ss_conf             9998495779999999999999947877899999999864478519999999999710779999


No 78 
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.37  E-value=9.6e-13  Score=95.76  Aligned_cols=97  Identities=24%  Similarity=0.337  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999874100124466655663275210013555532100000112588764221100002335669999999742
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG  152 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~  152 (271)
                      ++++|.++...|++++|+..|+++++++|.++.++..+|.++...|++++|...+++++..+|.++..+..+|.++..+|
T Consensus         3 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             99999999984999999999999998599989999999999998598589999999999869898999999999999949


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             11111000000000000
Q gi|254780592|r  153 KHSEALIEYERALELSP  169 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p  169 (271)
                      ++++|+..|+++++..|
T Consensus        83 ~~~~A~~~~~~al~~~P   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             CHHHHHHHHHHHHHHCC
T ss_conf             99999999999997490


No 79 
>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=99.33  E-value=8.5e-10  Score=77.68  Aligned_cols=201  Identities=16%  Similarity=0.115  Sum_probs=149.7

Q ss_pred             CHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             19999999999999--5757879999999999874100124466655663275210013555532100000112588764
Q gi|254780592|r   51 QLLEVTSTIGLQYQ--SHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAIN  128 (271)
Q Consensus        51 ~~~~A~~~~~~al~--~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  128 (271)
                      +.+.+...+...+.  ..+.|+...+..|.+|...|++++|+.++.+.     ++.+.......++..++|.+-|.+.++
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~~e~AL~~l~~~-----~~lE~~al~VQi~L~~nR~DLA~ke~~  155 (290)
T pfam04733        81 RKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKG-----ENLEAMALNVQILLKMHRIDLAEQQLK  155 (290)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             145699999999874015667899999999999779999999998558-----966799999999997288367999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             221100002335669999999742--111110000000000000001245777654332235543599999995389854
Q gi|254780592|r  129 RAQRPDIPDWQLISAKGSVLAQMG--KHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS  206 (271)
Q Consensus       129 ~a~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  206 (271)
                      .....+.+..-.....+.+....|  .+..|.-.|.......+.++..++..+.+.+.+|++++|...+++++..+|.++
T Consensus       156 ~~q~~~eDs~l~qLa~awv~l~~Ggek~q~A~yif~EL~~~~~~t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d~  235 (290)
T pfam04733       156 KMQQIDEDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDP  235 (290)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             98843510599999999999972647789899999999852289789999999999874787999999999987288988


Q ss_pred             HHHHHHHHHHHHCCCHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7888999999986998999-9999986291728665999999998321299999
Q gi|254780592|r  207 RIRQNLALVVGLQGRMKEA-YSIASQELSPEEATRNIKYIKSILSQRDPWKKIA  259 (271)
Q Consensus       207 ~~~~~La~~~~~~g~~~eA-~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a  259 (271)
                      +...|+..+....|+..|. .+++.+.-...|.++.+   ..+..+...+..++
T Consensus       236 dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v---~~~~~k~~~FD~~~  286 (290)
T pfam04733       236 ETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLV---KDLNEKEAEFDRAV  286 (290)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHH
T ss_conf             9999999999980998789999999998629998599---99999999999999


No 80 
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32  E-value=4.4e-11  Score=85.59  Aligned_cols=119  Identities=18%  Similarity=0.148  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf             12446665566327521001355553210000011258876422110000233566999999974211---111000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKH---SEALIEYER  163 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~---~~A~~~~~~  163 (271)
                      ++.+.-++.-++.+|++...|..+|++|...|+++.|...|+++....|++++.+..++..+...++.   .++...+++
T Consensus        64 e~~~~~L~~rL~~~Pdd~~gW~~LGr~y~~~~~~~~A~~Ay~kA~~L~p~~~~il~~yA~aL~~~~~~~~t~~~~~lL~~  143 (206)
T PRK10370         64 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNAYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK  143 (206)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             99999999999839988899999999999768989999999999975799878999999999987598776899999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             000000000124577765433223554359999999538985
Q gi|254780592|r  164 ALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD  205 (271)
Q Consensus       164 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  205 (271)
                      +++.+|++..++..+|...+..+||.+|+.++++.+...|.+
T Consensus       144 AL~lDp~~~~AL~Lla~~AFe~~dY~~AI~~Wq~lL~~~~p~  185 (206)
T PRK10370        144 ALALDANEVTALMLLASDAFMQADYAQAIELWQKLLDLNSPR  185 (206)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf             987498978899999999998264999999999998457999


No 81 
>KOG4340 consensus
Probab=99.26  E-value=3.6e-10  Score=80.01  Aligned_cols=187  Identities=16%  Similarity=0.096  Sum_probs=154.8

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99842019999999999999575787999999999987410012446665566327521001355553210000011258
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      ..+....|..|+..+....+.+|++...+..+|.+|+...++..|..+++++-.+.|.......-.+..+...+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340          19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99987667889999988874396006788899999999999988889999998637188889999999999703528899


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             87642211000023356699999997421111100000000000000012457776543322355435999999953898
Q gi|254780592|r  125 DAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA  204 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  204 (271)
                      .........+.-..+....-+.+....++...+....++.-.  .++.+...+.|-+..+.|+++.|+.-|+.|++.+.-
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340          99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC--CCCHHHHHCCHHHEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             999995684989999999999986054555354999985778--885023303012000165489999999998730576


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             54788899999998699899999999862
Q gi|254780592|r  205 DSRIRQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       205 ~~~~~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      ++..-+++|++....|+++.|.......+
T Consensus       177 qpllAYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340         177 QPLLAYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             72789999999873120778999999999


No 82 
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25  E-value=1.3e-09  Score=76.61  Aligned_cols=187  Identities=18%  Similarity=0.121  Sum_probs=145.3

Q ss_pred             HHHCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             842019999999999999575-7879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHT-KNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P-~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      -.-||++.|-.++.++-+..| ++....+..+.++...|+++.|.+-..++++..|.+++++....++|...|+|.....
T Consensus       129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~  208 (400)
T COG3071         129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA  208 (400)
T ss_pred             HHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             86305778989999986258994088999999999867886568988999987286886999999999998511899999


Q ss_pred             HHHHHHH------------------------------------------HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             7642211------------------------------------------000023356699999997421111100000-
Q gi|254780592|r  126 AINRAQR------------------------------------------PDIPDWQLISAKGSVLAQMGKHSEALIEYE-  162 (271)
Q Consensus       126 ~~~~a~~------------------------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~-  162 (271)
                      .+.+..+                                          .-..+++.-..++.-+...|++++|.+... 
T Consensus       209 ~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~  288 (400)
T COG3071         209 ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIED  288 (400)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             88999873578829999999999999999873620014789999866497605834899999999975876889999999


Q ss_pred             ------------------------------HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             ------------------------------00000000001245777654332235543599999995389854788899
Q gi|254780592|r  163 ------------------------------RALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNL  212 (271)
Q Consensus       163 ------------------------------~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~L  212 (271)
                                                    +.++..|+++..+..+|..+...+.+.+|..+|+.+++..|+. ..+..+
T Consensus       289 ~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~l  367 (400)
T COG3071         289 ALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAEL  367 (400)
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHH
T ss_conf             9874458569998865188993679999999998399981499999999998417899999999997258974-369999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             9999986998999999998629
Q gi|254780592|r  213 ALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       213 a~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      |.++..+|+..+|..+.+.+|.
T Consensus       368 a~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         368 ADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999981886889999999998


No 83 
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.25  E-value=1.6e-10  Score=82.13  Aligned_cols=129  Identities=21%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf             11258876422110000233566999999974211111000000000000000124577765433223---554359999
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGD---LKTAEEKLR  196 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~  196 (271)
                      .+.....++..+..+|++.+-|..+|.+|..+|+.+.|...|.+++.+.|++++.+..+|.++..+.+   ..++...|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             99999999999984988724499999999984443479999999987379988999999999999538844499999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH-HHHHHHH
Q ss_conf             999538985478889999999869989999999986291728665-9999999
Q gi|254780592|r  197 FASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRN-IKYIKSI  248 (271)
Q Consensus       197 ~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~-~~~l~~~  248 (271)
                      +++..+|++.++.+.||..+...|++.+|...++.-|+..|.+.. ...+...
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99843973288999999999981459999999999985189998237899999


No 84 
>KOG2053 consensus
Probab=99.25  E-value=2.7e-09  Score=74.62  Aligned_cols=214  Identities=17%  Similarity=0.167  Sum_probs=161.1

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      -.+.+..+++..|....++.++++|+.+.+..--|.++.++|+.++|..+++..-...+.+...+..+..+|..+|+.++
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053          16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             88775267799999999999987899179999999999981586467888751304799856899999999998742568


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-H---------HHHHH
Q ss_conf             5887642211000023356699999997421111100000000000000012457776543322-3---------55435
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMG-D---------LKTAE  192 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g-~---------~~~A~  192 (271)
                      +...|+++...+|+ .+....+-.+|.+.+.+.+-.+..-+..+..|+.+-..+....+.++.- .         ..-|.
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053          96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             99999998710884-88999999999998889999999999998587664058999999998225886321103278899


Q ss_pred             HHHHHHHHCC-CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCHHHH-HHHHHHHHHHHHHHH
Q ss_conf             9999999538-9854--788899999998699899999999862917--2866599-999999832129999
Q gi|254780592|r  193 EKLRFASQMI-GADS--RIRQNLALVVGLQGRMKEAYSIASQELSPE--EATRNIK-YIKSILSQRDPWKKI  258 (271)
Q Consensus       193 ~~~~~al~~~-p~~~--~~~~~La~~~~~~g~~~eA~~~~~~~L~~~--~~~~~~~-~l~~~l~~~~~~~~~  258 (271)
                      ..+++.++.+ +-.+  ++.. .-.++..+|.++||..++..-+...  +.+..+. .-..++..-+.|+++
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l  245 (932)
T KOG2053         175 KMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL  245 (932)
T ss_pred             HHHHHHHCCCCCCCHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf             999998614775103899999-99999862467889999978888742654468999888999984676889


No 85 
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.19  E-value=7.7e-11  Score=84.10  Aligned_cols=76  Identities=12%  Similarity=-0.015  Sum_probs=41.9

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9998420199999999999995757---879999999999874100124466655663275210013555532100000
Q gi|254780592|r   44 LENMNHEQLLEVTSTIGLQYQSHTK---NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        44 ~~~~~~~~~~~A~~~~~~al~~~P~---~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      +...+.|++.+|++.|.++++..++   ...++.++|.++...|++++|+++|.++++++|+.+.++.++|.+|..+|+
T Consensus        39 msaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pqA~NNlGvIyh~qG~  117 (165)
T CHL00033         39 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  117 (165)
T ss_pred             CHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             1010135389999999986234568512668998999999985888899999999998599968999789999999879


No 86 
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.18  E-value=6.6e-09  Score=72.25  Aligned_cols=196  Identities=17%  Similarity=0.070  Sum_probs=127.5

Q ss_pred             HHHHCCCCC--------CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             854036854--------33117999999842019999999999999575787---9999999999874100124466655
Q gi|254780592|r   27 FSSCHLNPR--------ISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNK---MIGIVYADVLRRVGRTAQALAVMRQ   95 (271)
Q Consensus        27 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~---~~~~~~a~~l~~~g~~~~A~~~~~~   95 (271)
                      .++|+....        ......++...++.|++.+|+..|++....+|.++   .+.+.++.++++.|++++|+..+++
T Consensus        17 ~~~cs~~~~~~~~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr   96 (254)
T COG4105          17 STGCSGDKDKNGVYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDR   96 (254)
T ss_pred             HCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             12577623330555788999999999998637889999999999870999811289999999998813558999999999


Q ss_pred             HHHCCCCCCHH---HHHHHHHHHH--------HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             66327521001---3555532100--------000112588764221100002335669999999742111110000000
Q gi|254780592|r   96 VAILYPEDQEV---LAAYGKSLAN--------AGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERA  164 (271)
Q Consensus        96 al~~~p~~~~~---~~~~~~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~  164 (271)
                      .+.++|.++.+   +...|.++..        ......|...++..+..-|+..                 =+...-.+.
T Consensus        97 Fi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-----------------Ya~dA~~~i  159 (254)
T COG4105          97 FIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-----------------YAPDAKARI  159 (254)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHH
T ss_conf             998789998716999999998752677544477999999999999998788970-----------------235599999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             000000001245777654332235543599999995389854---7888999999986998999999998629172866
Q gi|254780592|r  165 LELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS---RIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       165 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                      ......-..-=...|..|...|.+..|+.-++..++..|+.+   +++..+..+|..+|-.++|...- +.|..+..+.
T Consensus       160 ~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s  237 (254)
T COG4105         160 VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHCCCCC
T ss_conf             99999988999999999999057699999999998714555204778999999999828727899999-9997368988


No 87 
>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=99.17  E-value=8.1e-09  Score=71.70  Aligned_cols=205  Identities=13%  Similarity=0.089  Sum_probs=153.4

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHCC
Q ss_conf             999998420199999999999995757879999999999874100124466655663--275210013555532100000
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAI--LYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      ....++..|++...+..+..   ..+-...+...++..+....+.+.+++.+.+.+.  ..+.++.+....|.++...|+
T Consensus        41 ~~Ra~IAlg~~~~vl~ei~~---~~~p~L~av~~lA~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~  117 (290)
T pfam04733        41 MYRSYLALGSYQIVISEIKE---SAATPLQAVRLLAEYLNSPSRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGD  117 (290)
T ss_pred             HHHHHHHCCCHHHHHHHCCC---CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999973770378886267---898317999999998748411456999999998740156678999999999997799


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf             1125887642211000023356699999997421111100000000000000012457776543322--35543599999
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMG--DLKTAEEKLRF  197 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~  197 (271)
                      +++|+..+.+.     .+.+.......++.++++.+.|.+.+..+.+.+.+..-.....+++.+..|  ++.+|.-.|++
T Consensus       118 ~e~AL~~l~~~-----~~lE~~al~VQi~L~~nR~DLA~ke~~~~q~~~eDs~l~qLa~awv~l~~Ggek~q~A~yif~E  192 (290)
T pfam04733       118 FDDALKHLHKG-----ENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATLTQLANAWVKLAVGGEKIQDAYYIFQE  192 (290)
T ss_pred             HHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99999998558-----9667999999999972883679999999884351059999999999997264778989999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             995389854788899999998699899999999862917286659999999983212
Q gi|254780592|r  198 ASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDP  254 (271)
Q Consensus       198 al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~  254 (271)
                      .-+..+..+-.+..+|.+...+|+++||+..+..++..++.++++......+.+.-|
T Consensus       193 L~~~~~~t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d~dtlaNliv~s~~~g  249 (290)
T pfam04733       193 FSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINLVVCALHLG  249 (290)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             985228978999999999987478799999999998728898899999999999809


No 88 
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16  E-value=7.5e-10  Score=78.02  Aligned_cols=216  Identities=14%  Similarity=0.078  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99999999999985403685433-117999999842019999999999999575----7879999999999874100124
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNPRIS-IPDPESLENMNHEQLLEVTSTIGLQYQSHT----KNKMIGIVYADVLRRVGRTAQA   89 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~P----~~~~~~~~~a~~l~~~g~~~~A   89 (271)
                      +...+++.++++++||++++... ....-+....-.=+.+=++.-+.+.+....    .-...++..|.+|-..|-..-|
T Consensus         5 ~r~~~~~~~~l~LsGC~s~~~~~~~~~~~a~plqp~~q~Ev~laRl~qlL~~~~Lt~e~rA~l~yeRGvlyDSlGLr~LA   84 (297)
T PRK11189          5 LRWCFVATAALLLAGCASSNTSWRKSEVLAVPLQPSYQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALA   84 (297)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999999999998640588764448651446787799999999999997434589899999999831477641209999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             46665566327521001355553210000011258876422110000233566999999974211111000000000000
Q gi|254780592|r   90 LAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSP  169 (271)
Q Consensus        90 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p  169 (271)
                      .--|.+++.+.|+-+.++..+|..+...|+++.|.+.|+.+++.+|+..-++.++|..+...|+++.|.+.+.+....+|
T Consensus        85 R~DF~qAL~l~P~~adayN~LGiy~tq~~~fD~AyEAFDs~LEL~P~y~YA~lNRGIAlYYg~R~~LA~~D~~~fy~~dp  164 (297)
T PRK11189         85 RNDFSQALALRPDMADAYNYLGIYLTQEGEFDAAYEAFDSVLELDPTYDYAYLNRGIALYYGGRYDLAQDDLLAFYQDDP  164 (297)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             86499897539985899999999999971199999998777726987348998302788744637889999999996099


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             000124577765433--22355435999999953898547888999999986998999999998629
Q gi|254780592|r  170 NESSIVSNIAMSYLL--MGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       170 ~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      +++-=..   +.|+.  .-+..+|...+++-.+...++... .++...|...-..++........+.
T Consensus       165 ~DpYR~L---WLYl~e~~~d~~~A~~~L~~r~~~~~~~~W~-~~iV~~ylg~ise~~~~~~~~~~~~  227 (297)
T PRK11189        165 NDPYRAL---WLYLIEQKLDPKQAKENLKQRYEKLDKEQWG-WNIVDFYLGKISEEQLFERLKAGAT  227 (297)
T ss_pred             CCCHHHH---HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             9827999---9999981169999999999999835712268-9999999458999999999987273


No 89 
>PRK10803 hypothetical protein; Provisional
Probab=99.16  E-value=1.3e-08  Score=70.34  Aligned_cols=102  Identities=10%  Similarity=0.112  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCC
Q ss_conf             997421111100000000000000---0124577765433223554359999999538985---4788899999998699
Q gi|254780592|r  148 LAQMGKHSEALIEYERALELSPNE---SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLALVVGLQGR  221 (271)
Q Consensus       148 ~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~~~~~~g~  221 (271)
                      ....+++++|+..|..-++..|++   +.+++++|.+|..+|++++|+..|.+.++..|++   +++++.+|.++...|+
T Consensus       152 vl~~k~y~~Ai~aF~~Fi~~yP~s~y~~nA~YWLGe~~y~~~~~~~A~~~F~~vv~~yP~s~K~pdAllklg~~~~~lg~  231 (262)
T PRK10803        152 VQDKSRQDDAIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD  231 (262)
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99735699999999999987879987743099999999974378999999999998677998678999999999998599


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             8999999998629172866599999999
Q gi|254780592|r  222 MKEAYSIASQELSPEEATRNIKYIKSIL  249 (271)
Q Consensus       222 ~~eA~~~~~~~L~~~~~~~~~~~l~~~l  249 (271)
                      .++|...|++.+...|........+..+
T Consensus       232 ~~~Ak~~l~~vi~~YP~S~aA~lAk~~L  259 (262)
T PRK10803        232 TAKAKAVYQQVIKKYPGTDGAKQAQKRL  259 (262)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999999999885998999999998


No 90 
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.13  E-value=7.4e-10  Score=78.08  Aligned_cols=121  Identities=20%  Similarity=0.193  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC
Q ss_conf             4466655663275210013555532100000112588764221100002335669999999742---1111100000000
Q gi|254780592|r   89 ALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG---KHSEALIEYERAL  165 (271)
Q Consensus        89 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~  165 (271)
                      -+.-++.-+..+|++.+-|..+|.+|..+|+++.|...|.++....|++++.+..+|.++....   ...++...+++++
T Consensus       141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99999999984988724499999999984443479999999987379988999999999999538844499999999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             00000001245777654332235543599999995389854788
Q gi|254780592|r  166 ELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIR  209 (271)
Q Consensus       166 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  209 (271)
                      ..+|++..++..+|..++.+|+|.+|...++..+...|.+..-+
T Consensus       221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             43973288999999999981459999999999985189998237


No 91 
>KOG4648 consensus
Probab=99.11  E-value=1.1e-10  Score=83.10  Aligned_cols=201  Identities=7%  Similarity=-0.076  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             79999998420199999999999995757879999999999874100124466655663275210013555532100000
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      ..+...+..+|+|++|+.+|.+.+..+|-|+..+.+.|.+|.+..++..|..-++.++.++.....++...+.+-..+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648         101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87633676425413566665301245788864200588999988877754302889876328899998777789998775


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHC
Q ss_conf             11258876422110000233566999999-----------------------------------9742111110000000
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVL-----------------------------------AQMGKHSEALIEYERA  164 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~-----------------------------------~~~~~~~~A~~~~~~~  164 (271)
                      ..+|.+.++.++.+.|+..+..-.++.+-                                   ...|.++.++.++...
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~  260 (536)
T KOG4648         181 NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP  260 (536)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECC
T ss_conf             78777778899860856178999999861636544665257885667760555304257763132321214432675146


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             00000000124577765433223554359999999538985478889999999869989999999986291728665
Q gi|254780592|r  165 LELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRN  241 (271)
Q Consensus       165 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~  241 (271)
                      +.....+.....+ +..+..-.+++.++....+++-.+|........-+.+..-.|...|+...++.++...|....
T Consensus       261 ~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648         261 RATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             CCCCCCCCCCCCC-HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEECCCCCC
T ss_conf             4446841237664-778998862122478888750789986822369950678875544227341213551456556


No 92 
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.11  E-value=2.4e-09  Score=74.91  Aligned_cols=178  Identities=13%  Similarity=-0.009  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99999999999957578799999999998741001244666556632752100135555321000001125887642211
Q gi|254780592|r   53 LEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR  132 (271)
Q Consensus        53 ~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  132 (271)
                      .-|.-.|.+++..+|+-|+++.-+|.-+...|+++.|.+.|+.+++++|.+.-+..+.|..+.-.|++.-|.+.+.+--.
T Consensus        82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             99860145666349675899989999998602205799986667104775107776044023444751555999999984


Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------
Q ss_conf             0000233566999999974211111000-000000000000124577765433223554359999999538985------
Q gi|254780592|r  133 PDIPDWQLISAKGSVLAQMGKHSEALIE-YERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD------  205 (271)
Q Consensus       133 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------  205 (271)
                      .||+++.--.++-.. ...-++.+|... .+++...+...+...  +.  -...|+..+ ...++++.+...++      
T Consensus       162 ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~--iV--~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~  235 (297)
T COG4785         162 DDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWN--IV--EFYLGKISE-ETLMERLKADATDNTSLAEH  235 (297)
T ss_pred             CCCCCHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCCHHHHHHH--HH--HHHHHHCCH-HHHHHHHHHHHHHHHHHHHH
T ss_conf             498980789999987-6107868999999999870567655187--99--999704039-99999998631212899999


Q ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             -4788899999998699899999999862917
Q gi|254780592|r  206 -SRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       206 -~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                       ++.++.||.-+...|..++|..+++-+++.+
T Consensus       236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         236 LTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999861311788999999999887


No 93 
>KOG1915 consensus
Probab=99.08  E-value=2.3e-08  Score=68.96  Aligned_cols=207  Identities=10%  Similarity=-0.031  Sum_probs=141.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH--H-------HHHHHHH-HHHHCCHHHHHHHH
Q ss_conf             999999957578799999999998741001244666556632752100--1-------3555532-10000011258876
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE--V-------LAAYGKS-LANAGYLDEGLDAI  127 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~--~-------~~~~~~~-~~~~g~~~~A~~~~  127 (271)
                      .|.+.+..||-|.++|+.+-......|+.++-.+.|++++...|...+  .       |.+++.. .....+.+.+.+.|
T Consensus       310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy  389 (677)
T KOG1915         310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY  389 (677)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999872987706899999999722778899999999870599446778899999999999999999831278899999


Q ss_pred             HHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             422110000----2335669999999742111110000000000000001245777654332235543599999995389
Q gi|254780592|r  128 NRAQRPDIP----DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG  203 (271)
Q Consensus       128 ~~a~~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  203 (271)
                      +..+.+.|.    .+..|...+....++.+...|...+..++..-|.+... ..+..+-++.++++.-...|++-++.+|
T Consensus       390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcRkLYEkfle~~P  468 (677)
T KOG1915         390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCRKLYEKFLEFSP  468 (677)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             999863674311299999999999998703278999988874349716677-7787899987657899999999981692


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             85478889999999869989999999986291728665999999998321299999999711
Q gi|254780592|r  204 ADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPWKKIAKARSNH  265 (271)
Q Consensus       204 ~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a~a~~~~  265 (271)
                      .+..+|...|..-..+|+++.|..+|+-+++....+---.++++.+--.-.-.+..++|+.|
T Consensus       469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY  530 (677)
T KOG1915         469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY  530 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             76589998999998740078888999998338532037899987600454002578899999


No 94 
>KOG1070 consensus
Probab=99.06  E-value=6e-08  Score=66.39  Aligned_cols=190  Identities=13%  Similarity=0.019  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-CCCC----CHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99999999999957578799999999998741001244666556632-7521----001355553210000011258876
Q gi|254780592|r   53 LEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAIL-YPED----QEVLAAYGKSLANAGYLDEGLDAI  127 (271)
Q Consensus        53 ~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~g~~~~A~~~~  127 (271)
                      .+..+.|.+.+..+|+..-.|++|-.-..+.++.++|.+++++++.. ++..    ..+|..+-.....-|.-+...+.|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070        1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             76778899998609984028999999885024567789999998611786416777778999986787527689999999


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--C
Q ss_conf             42211000023356699999997421111100000000000000012457776543322355435999999953898--5
Q gi|254780592|r  128 NRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA--D  205 (271)
Q Consensus       128 ~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~  205 (271)
                      +++.+.... ...+..+..+|.....+++|.+.++.+++...+....|..++..++.+++-+.|...+++|++.-|.  +
T Consensus      1521 eRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070        1521 ERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHHCCH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf             999874336-8899998879987623104899999999986532568999999985144788999999999864650236


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             47888999999986998999999998629172866599
Q gi|254780592|r  206 SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       206 ~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      .++...-|++....|+.+.+..+++..|...|..-+++
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW 1637 (1710)
T KOG1070        1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLW 1637 (1710)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             88999999987651884356789887776385430279


No 95 
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06  E-value=6.1e-10  Score=78.58  Aligned_cols=120  Identities=13%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             99999999998741001244666556632752---100135555321000001125887642211000023356699999
Q gi|254780592|r   71 MIGIVYADVLRRVGRTAQALAVMRQVAILYPE---DQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV  147 (271)
Q Consensus        71 ~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~  147 (271)
                      -++++-|..-...|++.+|++.+.+++++.++   ...++.++|.++...|++++|++.|.+++..+|+.+++++++|.+
T Consensus        32 f~yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pqA~NNlGvI  111 (165)
T CHL00033         32 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  111 (165)
T ss_pred             HHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99998151010135389999999986234568512668998999999985888899999999998599968999789999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHH
Q ss_conf             9974211111000000000000000124577765433223554359999999538985-47888
Q gi|254780592|r  148 LAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD-SRIRQ  210 (271)
Q Consensus       148 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~  210 (271)
                      |..+|.........                    -.....+++|..++.+|+.+.|++ .++..
T Consensus       112 yh~qG~~a~~~~~~--------------------~~~~~~fd~aa~~w~~ai~lap~ny~eaqn  155 (165)
T CHL00033        112 CHYRGEQAIEQGDS--------------------EIAEAWFDQAAEYWKQAIALAPGNYIEAQN  155 (165)
T ss_pred             HHHHHHHHHHCCCH--------------------HHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             99987999984586--------------------789999999999999987038997099999


No 96 
>KOG1070 consensus
Probab=99.03  E-value=4.9e-08  Score=66.93  Aligned_cols=204  Identities=11%  Similarity=0.054  Sum_probs=172.0

Q ss_pred             CCCCCCCHHHHHHH-HHHHCCHHHHHHHHHHHHHH-CCCCH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             68543311799999-98420199999999999995-75787----99999999998741001244666556632752100
Q gi|254780592|r   32 LNPRISIPDPESLE-NMNHEQLLEVTSTIGLQYQS-HTKNK----MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE  105 (271)
Q Consensus        32 ~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~-~P~~~----~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~  105 (271)
                      ++|..+..+.+-++ +++.++.++|.....+|+.. |+...    ..|+.+-.....-|.-+.-..+|+++.+.. +.-.
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~ 1531 (1710)
T KOG1070        1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYT 1531 (1710)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CHHH
T ss_conf             099840289999998850245677899999986117864167777789999867875276899999999998743-3688


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHH
Q ss_conf             13555532100000112588764221100002335669999999742111110000000000000--0012457776543
Q gi|254780592|r  106 VLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN--ESSIVSNIAMSYL  183 (271)
Q Consensus       106 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~  183 (271)
                      ++..+..+|...+.+++|.+.++..++.-......|..++..+.++++.+.|...+.+++..-|.  ........+++-+
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070        1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             99998879987623104899999999986532568999999985144788999999999864650236889999999876


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             32235543599999995389854788899999998699899999999862917
Q gi|254780592|r  184 LMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       184 ~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      +.||.+.+...|+..+...|...+.|..+..+-...|..+....+|++++...
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070        1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             51884356789887776385430279999998870477799999999998647


No 97 
>KOG2376 consensus
Probab=99.02  E-value=3.9e-08  Score=67.49  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             79999998420199999999999995757879999999999874100124466655663
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAI   98 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~   98 (271)
                      ..++.-.++.+..++|...++   -.++.+..++...|.++++.|++++|+.+|+++++
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k  138 (652)
T KOG2376          83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK  138 (652)
T ss_pred             HHHHHHHHHCCCHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             788889987056788999875---03556618899999999987538999999999985


No 98 
>KOG3785 consensus
Probab=99.01  E-value=4e-08  Score=67.43  Aligned_cols=132  Identities=9%  Similarity=-0.027  Sum_probs=53.7

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH-------------------
Q ss_conf             9984201999999999999957578799999999998741001244666556632752100-------------------
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE-------------------  105 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~-------------------  105 (271)
                      -+...|+|++|...|.-+.+++.-+.+.+.++|.+..-.|++.+|.+...++-+ .|-..+                   
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh  144 (557)
T KOG3785          66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFH  144 (557)
T ss_pred             HHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             887521399999999988536799701025289999999989999999861898-7599999999998717688999999


Q ss_pred             --------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             --------135555321000001125887642211000023356699999997421111100000000000000012457
Q gi|254780592|r  106 --------VLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSN  177 (271)
Q Consensus       106 --------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  177 (271)
                              -...++-+....-.|++|...|.+.+..+|.....-..++.||.+...++-+.+.+...+...|++.-+.+.
T Consensus       145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NL  224 (557)
T KOG3785         145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNL  224 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             88754678777677779999989999999999970486364567889999985561666899999999968995888889


No 99 
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.00  E-value=1.2e-07  Score=64.45  Aligned_cols=198  Identities=22%  Similarity=0.256  Sum_probs=152.8

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH
Q ss_conf             999999842019999999999999--575787999999999987410012446665566327521001355553-21000
Q gi|254780592|r   41 PESLENMNHEQLLEVTSTIGLQYQ--SHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGK-SLANA  117 (271)
Q Consensus        41 ~~~~~~~~~~~~~~A~~~~~~al~--~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~  117 (271)
                      .........+++..+...+...+.  ..+.....+...+..+...+++.+++..+.+++...+.+.......+. ++...
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (291)
T COG0457          64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL  143 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             98889998663799999899988775352359999999999999843999999999987336564269999999999986


Q ss_pred             CCHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             001125887642211000---02335669999999742111110000000000000-00124577765433223554359
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDI---PDWQLISAKGSVLAQMGKHSEALIEYERALELSPN-ESSIVSNIAMSYLLMGDLKTAEE  193 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~  193 (271)
                      |+++.+...+.++....|   .........+..+...++++.+...+...+...+. ....+...+..+...++++.|..
T Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  223 (291)
T COG0457         144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE  223 (291)
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             40999999999998749444678999999998988703399999999999862801227999999999987525999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             999999538985478889999999869989999999986291728
Q gi|254780592|r  194 KLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       194 ~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                      .+..++...|.....+..++..+...|..+++...+.+.+...+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHH
T ss_conf             999998729101799999999988388699999999999987988


No 100
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.99  E-value=4e-08  Score=67.43  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHH
Q ss_conf             6699999997421111100000000000000---0124577765433223554359999999538985---478889999
Q gi|254780592|r  141 ISAKGSVLAQMGKHSEALIEYERALELSPNE---SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLAL  214 (271)
Q Consensus       141 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~  214 (271)
                      .+..+.-+...|++..|...|...+...|++   +.+++++|.++..+|+++.|...|..+++-.|.+   ++.++.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99999999983878899999999997099975560249998899986246167999999999838999988289999999


Q ss_pred             HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             999869989999999986291728665999999
Q gi|254780592|r  215 VVGLQGRMKEAYSIASQELSPEEATRNIKYIKS  247 (271)
Q Consensus       215 ~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~  247 (271)
                      +...+|+.++|-..++++++..|..+.....+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             999821779999999999987899779999999


No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD; InterPro: IPR005415    The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell  and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Yersinia spp. secrete effector proteins called YopB and YopD that facilitate the spread of other translocated proteins through the type III needle and the host cell cytoplasm . Both are believed to act as pore translocases, forming apertures in the host cell membrane and allowing the bacterium easy access to its cytoplasm. YopD also acts as a negative regulator of the Yersinia low-calcium response, and in turn is controlled by a chaperone, SycD . This protein also regulates YopB secretion. SycD is located on the Yop pathogenicity island of Yersinia spp., and is speculated to prevent a premature interaction between YopB, YopD and the calcium-response LcrV protein .   It has been speculated that a type III secretion mechanism also exists in Chlamydial species. With the sequencing of the Chlamydia trachomatis genome, several proteins similar to characterised type III proteins have emerged, including a SycD homologue . The Pseudomonas aeruginosa gene PcrH is also similar to the Yersinia chaperone, suggesting a comparable function.   Proteins in this entry are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system ,. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role . In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent . ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array .; GO: 0006950 response to stress.
Probab=98.97  E-value=1.6e-09  Score=76.04  Aligned_cols=109  Identities=22%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             56632752100135555321000001125887642211000023356699999997421111100000000000000012
Q gi|254780592|r   95 QVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSI  174 (271)
Q Consensus        95 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  174 (271)
                      .+..++++.-+.....|......|++++|...|.-....+|.+...|..||.|+..++++++|+..|..+..+++++|..
T Consensus         9 ~~~~l~~~~L~~~Y~~AY~~y~~G~Y~~A~~~F~~L~~~~~~~~~Y~~gLa~c~q~~~~Y~~A~~~Y~~a~~l~~~~P~p   88 (137)
T TIGR02552         9 SLLGLDSEQLEAIYALAYNLYQQGRYDEALKLFQLLAAYDPWNADYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP   88 (137)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             77289998999999999999853667999999999999743036899999999998616789999999997527686951


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             45777654332235543599999995389
Q gi|254780592|r  175 VSNIAMSYLLMGDLKTAEEKLRFASQMIG  203 (271)
Q Consensus       175 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p  203 (271)
                      +...|.+++..|+.+.|...|+-++++.+
T Consensus        89 ~~~~a~C~l~~g~~~~A~~aL~~a~~~~~  117 (137)
T TIGR02552        89 YYHAAECYLALGEPESALKALDLAIEIAG  117 (137)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf             26998999872897899999999999848


No 102
>KOG1915 consensus
Probab=98.97  E-value=2.8e-07  Score=62.23  Aligned_cols=192  Identities=15%  Similarity=0.069  Sum_probs=131.4

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             84201999999999999957578799999999998741001244666556632752100135555321000001125887
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDA  126 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~  126 (271)
                      .+++++..|.+.+.+|++.+..|...|+.++++-++......|..++++++.+-|.-...|.-+......+|+...|.+.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915          84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             76789999999999987034223359999999998640576788789888885330899999999999996541879999


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             64221100002335669999999742111110000000000000001245777654332235543599999995389854
Q gi|254780592|r  127 INRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS  206 (271)
Q Consensus       127 ~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  206 (271)
                      |.+.+...|.. .+|......-.+.+..+.|...|++-+-..|+ ...|...+..-..-|+...+...|+.|++.-.++-
T Consensus       164 ferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~  241 (677)
T KOG1915         164 FERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE  241 (677)
T ss_pred             HHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99997079727-89999999999865787788999888503602-89899999998752718889999999999861378


Q ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             ---7888999999986998999999998629172866
Q gi|254780592|r  207 ---RIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       207 ---~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                         ......|..-..+..++.|..+|+-+|+.-|.+.
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r  278 (677)
T KOG1915         242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR  278 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999999988899999999999987468650


No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162   Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.96  E-value=8.7e-09  Score=71.52  Aligned_cols=104  Identities=12%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf             356699999997421111100000000000000---0124577765433223554359999999538985---4788899
Q gi|254780592|r  139 QLISAKGSVLAQMGKHSEALIEYERALELSPNE---SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNL  212 (271)
Q Consensus       139 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~L  212 (271)
                      +.....+....+.|+++.|+..|..-++..|++   +.+++++|.++..+|+++.|...|..+++..|.+   +++++.|
T Consensus         3 ~~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKl   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             67899999998538878999999999886879876710547999999997339999999999986458998606899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             999998699899999999862917286659
Q gi|254780592|r  213 ALVVGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       213 a~~~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
                      |.++..+|+.++|..+|++++...|.....
T Consensus        83 g~~~~~~g~~~~A~~~l~~V~~~YP~s~aA  112 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             999987289889999999998566998788


No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94  E-value=1.4e-07  Score=64.12  Aligned_cols=165  Identities=17%  Similarity=0.078  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             1799999984201999999999999957578799999---9999987410012446665566327521001355553210
Q gi|254780592|r   39 PDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIV---YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLA  115 (271)
Q Consensus        39 ~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~---~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  115 (271)
                      .-.++....-.|++.+|...+.+.++.+|.|.-++..   .--.-...|..+....++......+|.+.-.+-.++..+.
T Consensus        46 ~hv~a~~~~~~g~~~~A~~~~~~~l~~~P~D~lalk~~~~~f~lg~~~g~~~~~~~~l~~~~p~~~~~~~~~gm~AF~le  125 (355)
T cd05804          46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999987997899999999998698359999987674102541324056999987257348983699999999999


Q ss_pred             HHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0000112588764221100002335669999999742111110000000000000----001245777654332235543
Q gi|254780592|r  116 NAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN----ESSIVSNIAMSYLLMGDLKTA  191 (271)
Q Consensus       116 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~~~~g~~~~A  191 (271)
                      +.|++++|.+.-++++..+|.+.=+...+++++..+|+.++++...+.....-..    ..-.++-.+..++..|+++++
T Consensus       126 E~g~~~~Ae~~a~~al~~np~d~wa~HAvAHv~~~~g~~~eG~~~l~~~~~~w~~~~~l~~H~wWH~AL~~Le~g~~~~~  205 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             85889999999999996399993799999999998388788999998517525778858989999999998877898899


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             599999995389
Q gi|254780592|r  192 EEKLRFASQMIG  203 (271)
Q Consensus       192 ~~~~~~al~~~p  203 (271)
                      ...|..-+...+
T Consensus       206 l~iyD~~i~~~~  217 (355)
T cd05804         206 LAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999888744566


No 105
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.93  E-value=8.4e-08  Score=65.48  Aligned_cols=190  Identities=16%  Similarity=0.094  Sum_probs=109.3

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99842019999999999999575787999999999987410012446665566327521001355553210000011258
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      .....||+..|...+.+.-... -+....+.-+......|+...+..+++.+.+..-++....-.+...+...|+.+.|+
T Consensus       518 ~~~~~Gd~aaa~~aw~~l~~~~-l~~~~RLtaa~~alaAGd~~aa~r~~~~a~~~~a~~~A~~a~i~~~~~~~g~~~~Al  596 (987)
T PRK09782        518 QAYQVEDYATALAAWQKISLHD-MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHH-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             9997103789999998489543-465888888887775489789999999987526732778999998763038738788


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             87642211000023356699999997421111100000000000000012457776543322355435999999953898
Q gi|254780592|r  125 DAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA  204 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  204 (271)
                      ...++++...|. ...+...+..+.+.|+...++..+..++...|+.+.....+|..+...|+..++...++++-.-.|.
T Consensus       597 ~~~r~al~~ap~-a~~~~A~~~~~~Q~~d~~qa~~~LAeAv~lepd~~~y~A~lGy~la~~~D~Aq~~~~lerAh~~~p~  675 (987)
T PRK09782        597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKDLPD  675 (987)
T ss_pred             HHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf             889999860800-4668999999997368078999999998179998541156777861399899999999975215775


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             54788899999998699899999999862917
Q gi|254780592|r  205 DSRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       205 ~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      +..+...|+.++.+.|+.+.|...++++|+..
T Consensus       676 d~~~~~~lAy~~~rl~D~a~a~~~~r~vID~~  707 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             52324788899876134699999999998654


No 106
>KOG1130 consensus
Probab=98.91  E-value=1.1e-08  Score=70.94  Aligned_cols=188  Identities=19%  Similarity=0.158  Sum_probs=116.0

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHC------CCCCCHHHHHHHHHHH
Q ss_conf             98420199999999999995757879----9999999998741001244666556632------7521001355553210
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKM----IGIVYADVLRRVGRTAQALAVMRQVAIL------YPEDQEVLAAYGKSLA  115 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~----~~~~~a~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~  115 (271)
                      .-..|+.+.-+..|+.+++...++..    ++..+|.+|...++|++|+++-..-+.+      .-....+--++|.++-
T Consensus        27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK  106 (639)
T KOG1130          27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK  106 (639)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHH
T ss_conf             87514624568999999983612788999999974114446763999976422357799874442012200455201456


Q ss_pred             HHCCHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHCCCCCC
Q ss_conf             0000112588764221100------0023356699999997421111--------------------1000000000000
Q gi|254780592|r  116 NAGYLDEGLDAINRAQRPD------IPDWQLISAKGSVLAQMGKHSE--------------------ALIEYERALELSP  169 (271)
Q Consensus       116 ~~g~~~~A~~~~~~a~~~~------p~~~~~~~~lg~~~~~~~~~~~--------------------A~~~~~~~~~~~p  169 (271)
                      -+|.|++|.....+.+...      -....+++++|++|...|+...                    |.+.|..-+++..
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130         107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30232068899998867999974777665777411111221264158888143065547889999999999999899998


Q ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             0------0012457776543322355435999999953898------54788899999998699899999999862
Q gi|254780592|r  170 N------ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA------DSRIRQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       170 ~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      .      .-.++-++|..|...|+|++|+.+-+.-+.+...      ..+++.|||.++.-+|+++.|.+.|+..+
T Consensus       187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130         187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             HHHHHHHHCCHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf             7446776331102457635650457999999999999999863188887764043103555304276999999999


No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD; InterPro: IPR005415    The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell  and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Yersinia spp. secrete effector proteins called YopB and YopD that facilitate the spread of other translocated proteins through the type III needle and the host cell cytoplasm . Both are believed to act as pore translocases, forming apertures in the host cell membrane and allowing the bacterium easy access to its cytoplasm. YopD also acts as a negative regulator of the Yersinia low-calcium response, and in turn is controlled by a chaperone, SycD . This protein also regulates YopB secretion. SycD is located on the Yop pathogenicity island of Yersinia spp., and is speculated to prevent a premature interaction between YopB, YopD and the calcium-response LcrV protein .   It has been speculated that a type III secretion mechanism also exists in Chlamydial species. With the sequencing of the Chlamydia trachomatis genome, several proteins similar to characterised type III proteins have emerged, including a SycD homologue . The Pseudomonas aeruginosa gene PcrH is also similar to the Yersinia chaperone, suggesting a comparable function.   Proteins in this entry are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system ,. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role . In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent . ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array .; GO: 0006950 response to stress.
Probab=98.90  E-value=2.9e-09  Score=74.47  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=46.7

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      +....++|+|.+|...|.-..-.||.+.+.++.+|.+....|++++|+..|..+..++|++|......+.|+..+|+...
T Consensus        25 AY~~y~~G~Y~~A~~~F~~L~~~~~~~~~Y~~gLa~c~q~~~~Y~~A~~~Y~~a~~l~~~~P~p~~~~a~C~l~~g~~~~  104 (137)
T TIGR02552        25 AYNLYQQGRYDEALKLFQLLAAYDPWNADYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYYHAAECYLALGEPES  104 (137)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf             99998536679999999999997430368999999999986167899999999975276869512699899987289789


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             5887642211000
Q gi|254780592|r  123 GLDAINRAQRPDI  135 (271)
Q Consensus       123 A~~~~~~a~~~~p  135 (271)
                      |...++.++....
T Consensus       105 A~~aL~~a~~~~~  117 (137)
T TIGR02552       105 ALKALDLAIEIAG  117 (137)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999848


No 108
>PRK10803 hypothetical protein; Provisional
Probab=98.90  E-value=1.9e-08  Score=69.41  Aligned_cols=97  Identities=11%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHH
Q ss_conf             10000011258876422110000---23356699999997421111100000000000000---0124577765433223
Q gi|254780592|r  114 LANAGYLDEGLDAINRAQRPDIP---DWQLISAKGSVLAQMGKHSEALIEYERALELSPNE---SSIVSNIAMSYLLMGD  187 (271)
Q Consensus       114 ~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~g~  187 (271)
                      ....++|++|...|..-+...|+   .+.+++++|.+|...|++++|...|...+...|++   ++++..+|.++...|+
T Consensus       152 vl~~k~y~~Ai~aF~~Fi~~yP~s~y~~nA~YWLGe~~y~~~~~~~A~~~F~~vv~~yP~s~K~pdAllklg~~~~~lg~  231 (262)
T PRK10803        152 VQDKSRQDDAIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD  231 (262)
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99735699999999999987879987743099999999974378999999999998677998678999999999998599


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             55435999999953898547888
Q gi|254780592|r  188 LKTAEEKLRFASQMIGADSRIRQ  210 (271)
Q Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~  210 (271)
                      .++|..+|++.++..|++..+..
T Consensus       232 ~~~Ak~~l~~vi~~YP~S~aA~l  254 (262)
T PRK10803        232 TAKAKAVYQQVIKKYPGTDGAKQ  254 (262)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999999999998859989999


No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90  E-value=2e-07  Score=63.19  Aligned_cols=168  Identities=21%  Similarity=0.188  Sum_probs=112.5

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             879999999999874100124466655663275210013555532100----0001125887642211000023356699
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN----AGYLDEGLDAINRAQRPDIPDWQLISAK  144 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l  144 (271)
                      ..+-...-+..+...|++.+|...+++.+..+|.+.-++.. -..+.-    .|..+.....+......+|.++-.+..+
T Consensus        42 ~RE~~hv~a~~~~~~g~~~~A~~~~~~~l~~~P~D~lalk~-~~~~f~lg~~~g~~~~~~~~l~~~~p~~~~~~~~~gm~  120 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             89999999999998799789999999999869835999998-76741025413240569999872573489836999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHCC
Q ss_conf             9999974211111000000000000000124577765433223554359999999538985----478889999999869
Q gi|254780592|r  145 GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD----SRIRQNLALVVGLQG  220 (271)
Q Consensus       145 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~La~~~~~~g  220 (271)
                      +..+...|++++|.+.-+++++++|++.=+...++-.+..+|+.++++.+++.....-..+    .-.|..+|+.+...|
T Consensus       121 AF~leE~g~~~~Ae~~a~~al~~np~d~wa~HAvAHv~~~~g~~~eG~~~l~~~~~~w~~~~~l~~H~wWH~AL~~Le~g  200 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999858899999999999963999937999999999983887889999985175257788589899999999988778


Q ss_pred             CHHHHHHHHHHHCCCCC
Q ss_conf             98999999998629172
Q gi|254780592|r  221 RMKEAYSIASQELSPEE  237 (271)
Q Consensus       221 ~~~eA~~~~~~~L~~~~  237 (271)
                      +++++..+|...+.+..
T Consensus       201 ~~~~~l~iyD~~i~~~~  217 (355)
T cd05804         201 DYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CHHHHHHHHHHHHCCCC
T ss_conf             98899999888744566


No 110
>KOG0543 consensus
Probab=98.89  E-value=2.1e-08  Score=69.21  Aligned_cols=101  Identities=21%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             9999999742111110000000000000---------------0012457776543322355435999999953898547
Q gi|254780592|r  143 AKGSVLAQMGKHSEALIEYERALELSPN---------------ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR  207 (271)
Q Consensus       143 ~lg~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  207 (271)
                      ..|+.+.+.|++..|...|++++..-+.               -...+.|++.++++.++|..|+..+.++++.+|.|..
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543         213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             75158875121999999999999875113469978999998888777647998887412188999999998845899626


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             888999999986998999999998629172866599
Q gi|254780592|r  208 IRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       208 ~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      +.++-|.++..+|.++.|...+++++..+|.+..+.
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~  328 (397)
T KOG0543         293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR  328 (397)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             777878898864209899999999997488868999


No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162   Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.88  E-value=1.4e-08  Score=70.29  Aligned_cols=103  Identities=13%  Similarity=0.084  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q ss_conf             1799999984201999999999999957578---7999999999987410012446665566327521---001355553
Q gi|254780592|r   39 PDPESLENMNHEQLLEVTSTIGLQYQSHTKN---KMIGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGK  112 (271)
Q Consensus        39 ~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~---~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~  112 (271)
                      ....+...+..|||+.|+..|+.-++..|++   |.+++.+|++++..|+++.|...|..+++.+|++   ++++..+|.
T Consensus         5 ~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             89999999853887899999999988687987671054799999999733999999999998645899860689999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             21000001125887642211000023356
Q gi|254780592|r  113 SLANAGYLDEGLDAINRAQRPDIPDWQLI  141 (271)
Q Consensus       113 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  141 (271)
                      ++..+|+.++|...|++.+..-|....+.
T Consensus        85 ~~~~~g~~~~A~~~l~~V~~~YP~s~aA~  113 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99872898899999999985669987889


No 112
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.83  E-value=2.9e-06  Score=56.06  Aligned_cols=192  Identities=23%  Similarity=0.234  Sum_probs=165.7

Q ss_pred             HCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             20199999999999995757--879999999999874100124466655663--27521001355553210000011258
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTK--NKMIGIVYADVLRRVGRTAQALAVMRQVAI--LYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~--~~~~~~~~a~~l~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      .+.+..+...+...+...+.  ........+..+...++...+...+.....  ..+.....+...+......+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             44699999999999876331111689999888999866379999989998877535235999999999999984399999


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8764221100002335669999-99974211111000000000000---0001245777654332235543599999995
Q gi|254780592|r  125 DAINRAQRPDIPDWQLISAKGS-VLAQMGKHSEALIEYERALELSP---NESSIVSNIAMSYLLMGDLKTAEEKLRFASQ  200 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~~~lg~-~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  200 (271)
                      ..+.......+.........+. ++...|+++.+...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999873365642699999999999864099999999999874944467899999999898870339999999999986


Q ss_pred             CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             3898-547888999999986998999999998629172866
Q gi|254780592|r  201 MIGA-DSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       201 ~~p~-~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                      ..+. ....+..++..+...|.+++|...+..++...+...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  236 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA  236 (291)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             28012279999999999875259999999999987291017


No 113
>KOG0543 consensus
Probab=98.81  E-value=7.5e-08  Score=65.78  Aligned_cols=143  Identities=13%  Similarity=0.141  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999874100124466655663275210013555532100000112588764221100002335669999999742
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG  152 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~  152 (271)
                      .-..|..|.+.|++..|...|++++..-+.....-.            ++..       .........+.+++.|+.+++
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------ee~~-------~~~~~k~~~~lNlA~c~lKl~  271 (397)
T KOG0543         211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------EEQK-------KAEALKLACHLNLAACYLKLK  271 (397)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCH------------HHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_conf             877515887512199999999999987511346997------------8999-------998888777647998887412


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH-HHHHHH
Q ss_conf             1111100000000000000012457776543322355435999999953898547888999999986998999-999998
Q gi|254780592|r  153 KHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEA-YSIASQ  231 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA-~~~~~~  231 (271)
                      ++..|+..-.+.++..|++..+++..|.++...|+++.|...|+++++..|.|..+...|..+-....++.+. .+.|.+
T Consensus       272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543         272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             18899999999884589962677787889886420989999999999748886899999999999999999889999999


Q ss_pred             HCC
Q ss_conf             629
Q gi|254780592|r  232 ELS  234 (271)
Q Consensus       232 ~L~  234 (271)
                      .+.
T Consensus       352 mF~  354 (397)
T KOG0543         352 MFA  354 (397)
T ss_pred             HHH
T ss_conf             850


No 114
>KOG3785 consensus
Probab=98.78  E-value=3.3e-07  Score=61.85  Aligned_cols=187  Identities=10%  Similarity=0.015  Sum_probs=98.0

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             9999842019999999999999575787-999999999987410012446665566327521001355553210000011
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNK-MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD  121 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~-~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  121 (271)
                      -.+-+...||..|+..++-....+.... ..-..+|.++...|++++|++.++-+.+.+.-+.+.+..++-+..-+|.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785          29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             88887525514589999886044414467899999998875213999999999885367997010252899999999899


Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             25887642211000023356699999997421111100000000000000012457776543322355435999999953
Q gi|254780592|r  122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM  201 (271)
Q Consensus       122 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  201 (271)
                      +|.....++.+ .|-..+.++.++   .+.++... +-.|...+.   +..+....++....-...|.+|+..|++.+.-
T Consensus       109 eA~~~~~ka~k-~pL~~RLlfhla---hklndEk~-~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785         109 EAKSIAEKAPK-TPLCIRLLFHLA---HKLNDEKR-ILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHH---HHHCCHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999861898-759999999999---87176889-999998875---46787776777799999899999999999704


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             898547888999999986998999999998629172
Q gi|254780592|r  202 IGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEE  237 (271)
Q Consensus       202 ~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~  237 (271)
                      +|.....-..+|++|..+.-++-+.+++.--|..-|
T Consensus       181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p  216 (557)
T KOG3785         181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP  216 (557)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf             863645678899999855616668999999999689


No 115
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.75  E-value=1.3e-06  Score=58.21  Aligned_cols=147  Identities=14%  Similarity=0.089  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9999999999995757879999999999874100124466655663-275210013555532100000112588764221
Q gi|254780592|r   53 LEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAI-LYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQ  131 (271)
Q Consensus        53 ~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  131 (271)
                      +.......+.++.-|.+ .-.+.+|..+.+.|++.+|...|++++. +.-+++..+..++......+++-.+...+++..
T Consensus        73 ~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          73 ERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             58999999887646137-88999999999841056668899998546567988999888988886165888888999986


Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             10000233566999999974211111000000000000000124577765433223554359999999538985478889
Q gi|254780592|r  132 RPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQN  211 (271)
Q Consensus       132 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  211 (271)
                      +.+|..                                ..++....++..+..+|.+.+|...|+.++...|+ ...+-.
T Consensus       152 e~~pa~--------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~  198 (251)
T COG4700         152 EYNPAF--------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIY  198 (251)
T ss_pred             HCCCCC--------------------------------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf             059765--------------------------------89972589999998458805589999999985887-778989


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             9999998699899999999862
Q gi|254780592|r  212 LALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       212 La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      ++.++..+|+.+||...+....
T Consensus       199 Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         199 YAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHH
T ss_conf             9999997122167888799999


No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72  E-value=1.4e-06  Score=58.00  Aligned_cols=166  Identities=11%  Similarity=-0.067  Sum_probs=116.2

Q ss_pred             CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHH---HHH
Q ss_conf             7879999999999874100124466655663275210---0135555321000001125887642211000023---356
Q gi|254780592|r   68 KNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ---EVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDW---QLI  141 (271)
Q Consensus        68 ~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~  141 (271)
                      ..+..++..|..+...|++.+|+..|+++...+|..+   .+...++.++...|++++|...+++-+...|.+.   .++
T Consensus        31 ~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~~~~ya~  110 (235)
T TIGR03302        31 RPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             89999999999999878999999999999986899313799999999999976439999999999999887743499999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-------------
Q ss_conf             6999999974211111000000000000000124577765433223554359999999538985478-------------
Q gi|254780592|r  142 SAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRI-------------  208 (271)
Q Consensus       142 ~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------  208 (271)
                      ...|.++..+-.                .          ....++....|+..|+..+...|++.-+             
T Consensus       111 y~~a~s~~~~~~----------------~----------~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~~l~~~  164 (235)
T TIGR03302       111 YLRGLSNYKQID----------------D----------SDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR  164 (235)
T ss_pred             HHHHHHHHHHCC----------------C----------CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             998799887366----------------5----------44580899999999999998889965799999999999999


Q ss_pred             ----HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHHHHHHHH
Q ss_conf             ----88999999986998999999998629172866---5999999998321299999
Q gi|254780592|r  209 ----RQNLALVVGLQGRMKEAYSIASQELSPEEATR---NIKYIKSILSQRDPWKKIA  259 (271)
Q Consensus       209 ----~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~---~~~~l~~~l~~~~~~~~~a  259 (271)
                          -...|..|...|++..|...++..+..-|...   ...+...-....-|..+.|
T Consensus       165 LA~~e~~ia~~Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A  222 (235)
T TIGR03302       165 LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLA  222 (235)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9999999999999841709999999999986899851399999999999986998999


No 117
>KOG2047 consensus
Probab=98.70  E-value=3.1e-06  Score=55.90  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             HCCHHHHHHHHHHHHHH-CCCC-----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHC
Q ss_conf             20199999999999995-7578-----7999999999987410012446665566327521----001355553210000
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQS-HTKN-----KMIGIVYADVLRRVGRTAQALAVMRQVAILYPED----QEVLAAYGKSLANAG  118 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~-~P~~-----~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g  118 (271)
                      .++..+-+..|..|++. ||.-     ...|..+|..|...|+.+.|..+|+++.+..-..    ..+|..++....+..
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047         360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             47767787889999971695437897026799999999833748889999988414786326789999999999887665


Q ss_pred             CHHHHHHHHHHHHHHH------------C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             0112588764221100------------0------023356699999997421111100000000000000012457776
Q gi|254780592|r  119 YLDEGLDAINRAQRPD------------I------PDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM  180 (271)
Q Consensus       119 ~~~~A~~~~~~a~~~~------------p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  180 (271)
                      +++.|+...+++...-            |      .....|..++......|-++.....|.+.++++--.+....|+|.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047         440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             28999999876304898515555058985899998719999999889997252799999999888876187999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             543322355435999999953
Q gi|254780592|r  181 SYLLMGDLKTAEEKLRFASQM  201 (271)
Q Consensus       181 ~~~~~g~~~~A~~~~~~al~~  201 (271)
                      .+..-.-++++...|++-+.+
T Consensus       520 fLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047         520 FLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             987558999999999737756


No 118
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.67  E-value=6.4e-07  Score=60.05  Aligned_cols=186  Identities=12%  Similarity=0.020  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q ss_conf             79999998420199999999999995757879999999999874100124466655663275210013555532100---
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN---  116 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---  116 (271)
                      ..++.....++++.+|+..++-++..-|+|..+...++++|.+.|++.+|..++++..+.+|.+...-..+..+...   
T Consensus        48 iDkAy~e~k~~~~~~a~re~~h~l~~vP~n~~~~~~Laea~~h~g~~~eA~all~~~~~~~~gDA~L~l~L~wie~~pp~  127 (987)
T PRK09782         48 LDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKS  127 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             67999998715488899999999986889619999999999983893899999986134898257999888764148998


Q ss_pred             --------------------------------HCCHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------------------------------0001125887642-2110000233566999999974211111000000
Q gi|254780592|r  117 --------------------------------AGYLDEGLDAINR-AQRPDIPDWQLISAKGSVLAQMGKHSEALIEYER  163 (271)
Q Consensus       117 --------------------------------~g~~~~A~~~~~~-a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  163 (271)
                                                      +..+..+...++- .....+.-......++.......++..++..+..
T Consensus       128 a~~~Ee~la~~k~~~~v~~~q~~S~~~~~al~LAk~~ga~~aL~~~~~pp~~~g~~lr~~r~~~a~~lk~w~~a~~~l~~  207 (987)
T PRK09782        128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE  207 (987)
T ss_pred             CCHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCHHHCCCCHHHCCHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             42699999750543020067786553003346554058253250321899755636478999999870377888766578


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             00000000012457776543322355435999999953898--54788899999998699899999999
Q gi|254780592|r  164 ALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA--DSRIRQNLALVVGLQGRMKEAYSIAS  230 (271)
Q Consensus       164 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~La~~~~~~g~~~eA~~~~~  230 (271)
                      +.....-+..-+..++.+++..++-+....+     +..+-  +...+..++.-+...|.+++|...+.
T Consensus       208 ~~~~~~l~a~d~~~la~a~l~~~~e~~l~al-----qa~~~~~~~Q~rl~ya~~li~~G~~~~aq~~L~  271 (987)
T PRK09782        208 ARQQNTLSAAERRQWFDVLLAGQLDDRLLAL-----QSQGIFTDPQSRITYATALAYRGEKARLQHYLI  271 (987)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8735688889999999888730237889873-----279877677789999999998306999999987


No 119
>KOG4648 consensus
Probab=98.65  E-value=9.6e-08  Score=65.12  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             69999999742111110000000000000001245777654332235543599999995389854788899999998699
Q gi|254780592|r  142 SAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGR  221 (271)
Q Consensus       142 ~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~  221 (271)
                      -..|+-|.++|.+++|+++|.+++...|.++..+.|.+.+|+....+..|...+..|+.++.....+|.+.+.+...+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648         101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87633676425413566665301245788864200588999988877754302889876328899998777789998775


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             8999999998629172866599
Q gi|254780592|r  222 MKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       222 ~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      ..||.+.++.+|..+|....+.
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELk  202 (536)
T KOG4648         181 NMEAKKDCETVLALEPKNIELK  202 (536)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHH
T ss_conf             7877777889986085617899


No 120
>pfam09295 ChAPs ChAPs (Chs5p-Arf1p-binding proteins). ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialized cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other.
Probab=98.64  E-value=3e-07  Score=62.13  Aligned_cols=113  Identities=14%  Similarity=0.131  Sum_probs=91.7

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             20199999999999995757879999999999874100124466655663275210013555532100000112588764
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAIN  128 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  128 (271)
                      .+.++.++..+++..+.+|   ++..-++.++...++--+|+..+.+.+...|.+...+...+..+...++++-|+...+
T Consensus       182 t~~~~~~~~~le~L~~~~p---~v~~llakv~~~~~~E~~av~~i~~~L~~~p~d~~LL~~Qa~FLl~K~~yelAL~~A~  258 (395)
T pfam09295       182 TKRYDRALNLLEKLREEEP---EVVSLLARVLLLMDEEIDAVKLMHDALQENPMDYELLCLQAEFLLSKKKDELALECAK  258 (395)
T ss_pred             CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             4438989999999875184---4999999999965608999999999986188767899999999981798899999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             221100002335669999999742111110000000
Q gi|254780592|r  129 RAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERA  164 (271)
Q Consensus       129 ~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~  164 (271)
                      +++...|.+...|..++.+|...|+++.|.-.++..
T Consensus       259 ~av~~~P~~F~~W~~La~~Yi~l~d~e~ALl~LNS~  294 (395)
T pfam09295       259 RAVNSAPSEFKTWALLVKVYIKLEDWENALLTLNSC  294 (395)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             987317866188999999999863299999999568


No 121
>pfam09295 ChAPs ChAPs (Chs5p-Arf1p-binding proteins). ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialized cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other.
Probab=98.60  E-value=4.4e-07  Score=61.07  Aligned_cols=118  Identities=19%  Similarity=0.216  Sum_probs=92.2

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99987410012446665566327521001355553210000011258876422110000233566999999974211111
Q gi|254780592|r   78 DVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEA  157 (271)
Q Consensus        78 ~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A  157 (271)
                      ......++++.++.+++++...+|+   +...+++++...++..+|...+.+++...|.+...+...+..+...++++.|
T Consensus       177 ~~~~~t~~~~~~~~~le~L~~~~p~---v~~llakv~~~~~~E~~av~~i~~~L~~~p~d~~LL~~Qa~FLl~K~~yelA  253 (395)
T pfam09295       177 KYVRLTKRYDRALNLLEKLREEEPE---VVSLLARVLLLMDEEIDAVKLMHDALQENPMDYELLCLQAEFLLSKKKDELA  253 (395)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf             9994244389899999998751844---9999999999656089999999999861887678999999999817988999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00000000000000012457776543322355435999999
Q gi|254780592|r  158 LIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA  198 (271)
Q Consensus       158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  198 (271)
                      ....+++....|.+...|..++.+|+..|+++.|+-.+...
T Consensus       254 L~~A~~av~~~P~~F~~W~~La~~Yi~l~d~e~ALl~LNS~  294 (395)
T pfam09295       254 LECAKRAVNSAPSEFKTWALLVKVYIKLEDWENALLTLNSC  294 (395)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999987317866188999999999863299999999568


No 122
>KOG2053 consensus
Probab=98.59  E-value=3.3e-06  Score=55.72  Aligned_cols=199  Identities=15%  Similarity=0.097  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             79999998420199999999999995757879999999999874100124466655663275210013555532100000
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      --++....+.|..++|...++......|+|...+-.+-.+|...|+.++|..+|+++++.+|+ .+.+..+-.+|.+.+.
T Consensus        47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053          47 VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_conf             999999998158646788875130479985689999999999874256899999998710884-8899999999999888


Q ss_pred             HHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHHCCCCCCH-H-HHHHHHHHHHHHHHHH
Q ss_conf             112588764221100002335-6699999997421111100---------00000000000-0-0124577765433223
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQL-ISAKGSVLAQMGKHSEALI---------EYERALELSPN-E-SSIVSNIAMSYLLMGD  187 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~-~~~lg~~~~~~~~~~~A~~---------~~~~~~~~~p~-~-~~~~~~~~~~~~~~g~  187 (271)
                      |.+-.+.--+.-+..|+.+-. |.....+...+...+....         ...+.++..+. . ..=...+-.++..+|+
T Consensus       126 yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k  205 (932)
T KOG2053         126 YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK  205 (932)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999999985876640589999999982258863211032788999999986147751038999999999986246


Q ss_pred             HHHHHHHH-HHHHHCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             55435999-999953898547888-99999998699899999999862917286
Q gi|254780592|r  188 LKTAEEKL-RFASQMIGADSRIRQ-NLALVVGLQGRMKEAYSIASQELSPEEAT  239 (271)
Q Consensus       188 ~~~A~~~~-~~al~~~p~~~~~~~-~La~~~~~~g~~~eA~~~~~~~L~~~~~~  239 (271)
                      +++|...+ .+..+..+....... .-...+...+++.+=.++..+.+...+.+
T Consensus       206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053         206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf             788999997888874265446899988899998467688999999999847841


No 123
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.57  E-value=9.2e-07  Score=59.10  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHH
Q ss_conf             355553210000011258876422110000---23356699999997421111100000000000000---012457776
Q gi|254780592|r  107 LAAYGKSLANAGYLDEGLDAINRAQRPDIP---DWQLISAKGSVLAQMGKHSEALIEYERALELSPNE---SSIVSNIAM  180 (271)
Q Consensus       107 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~  180 (271)
                      .+..+.-+...|+|..|...|...+...|+   .+.+++++|.++..+|++++|...|.......|++   ++.+..+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99999999983878899999999997099975560249998899986246167999999999838999988289999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             543322355435999999953898547888
Q gi|254780592|r  181 SYLLMGDLKTAEEKLRFASQMIGADSRIRQ  210 (271)
Q Consensus       181 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  210 (271)
                      +....|+.++|...|+++++..|+.+.+..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999821779999999999987899779999


No 124
>KOG2047 consensus
Probab=98.56  E-value=3.4e-05  Score=49.50  Aligned_cols=205  Identities=16%  Similarity=0.113  Sum_probs=140.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC------------------C
Q ss_conf             984201999999999999957578----799999999998741001244666556632752------------------1
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKN----KMIGIVYADVLRRVGRTAQALAVMRQVAILYPE------------------D  103 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~----~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~------------------~  103 (271)
                      +.+.++++.|...|+++.+.+=.-    ..+|...|+.-.+..+++.|+.+++++...-..                  .
T Consensus       397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS  476 (835)
T KOG2047         397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS  476 (835)
T ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf             98337488899999884147863267899999999998876652899999987630489851555505898589999871


Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH-
Q ss_conf             00135555321000001125887642211000023356699999997421111100000000000000--012457776-
Q gi|254780592|r  104 QEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNE--SSIVSNIAM-  180 (271)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~-  180 (271)
                      ..+|..+++.....|-++.....|++.+.+.--.++...+.|..+.....++++.+.|++.+.+.+-+  .++|..+-. 
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk  556 (835)
T KOG2047         477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK  556 (835)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999998899972527999999998888761879999999999875589999999997377567883289999999999


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             --5433223554359999999538985--478889999999869989999999986291728665999999998
Q gi|254780592|r  181 --SYLLMGDLKTAEEKLRFASQMIGAD--SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILS  250 (271)
Q Consensus       181 --~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~  250 (271)
                        .....-..+.|...|++|++..|..  ..++...|..-..-|--..|.++|+++-+.-+...........+.
T Consensus       557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~  630 (835)
T KOG2047         557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK  630 (835)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99996688778899999999835998877899999999999850799899999998732798999999999999


No 125
>KOG4340 consensus
Probab=98.56  E-value=3.5e-06  Score=55.52  Aligned_cols=157  Identities=14%  Similarity=0.049  Sum_probs=105.0

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      +.-+....+|..|...|.+.-...|+.....+-.|..+++.+.+..|+.+.........-..+.+..-+.+....+++..
T Consensus        51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g  130 (459)
T KOG4340          51 GYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPG  130 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999998888999999863718888999999999970352889999999568498999999999998605455535


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5887642211000023356699999997421111100000000000000012457776543322355435999999953
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM  201 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  201 (271)
                      +....++...  .+++....+.|-+..+.|+++.|.+-|..+++..+-.+..-++++.+....++++.|+.+..+.++.
T Consensus       131 ~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340         131 SRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHHHHHHCCC--CCCHHHHHCCHHHEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4999985778--8850233030120001654899999999987305767278999999987312077899999999975


No 126
>KOG1130 consensus
Probab=98.52  E-value=1.9e-07  Score=63.33  Aligned_cols=127  Identities=15%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCH--HHH
Q ss_conf             135555321000001125887642211000------02335669999999742111110000000000----000--001
Q gi|254780592|r  106 VLAAYGKSLANAGYLDEGLDAINRAQRPDI------PDWQLISAKGSVLAQMGKHSEALIEYERALEL----SPN--ESS  173 (271)
Q Consensus       106 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~  173 (271)
                      ++-.+|..|+-+|+|+.|...-+.-+....      ....++.++|+++.-.|+++.|.+.|+..+.+    ...  ...
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130         197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             10245763565045799999999999999986318888776404310355530427699999999999999631368889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             245777654332235543599999995389------85478889999999869989999999986
Q gi|254780592|r  174 IVSNIAMSYLLMGDLKTAEEKLRFASQMIG------ADSRIRQNLALVVGLQGRMKEAYSIASQE  232 (271)
Q Consensus       174 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~La~~~~~~g~~~eA~~~~~~~  232 (271)
                      ..+.+|..|....++..|+.++++-+.+..      ...++++.||..+...|..+.|....++.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130         277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89876448999999999999999999999998876414899999878887642178889999999


No 127
>KOG3081 consensus
Probab=98.51  E-value=9.7e-06  Score=52.83  Aligned_cols=166  Identities=18%  Similarity=0.129  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             87999999999987410012446665566327521001355553210000011258876422110000233566999999
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVL  148 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~  148 (271)
                      |...+..-|.++...|++++|.....+.     .+.++...-..++.++.+.+-|...+++....+..  .....++..|
T Consensus       107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw  179 (299)
T KOG3081         107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW  179 (299)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHH
T ss_conf             3899997668754278868999998521-----24889998779999878999999999999711357--8999999999


Q ss_pred             HH----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             97----42111110000000000000001245777654332235543599999995389854788899999998699899
Q gi|254780592|r  149 AQ----MGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKE  224 (271)
Q Consensus       149 ~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~e  224 (271)
                      ..    .+...+|.=.|+..-+..|..+..+...+.+.+.+|++++|...++.++..++.+++...|+-..-...|..++
T Consensus       180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081         180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf             99960632454689999998353599768870699998971699999999999985347878999999999998189917


Q ss_pred             HHHHHHHHC-CCCCCCHH
Q ss_conf             999999862-91728665
Q gi|254780592|r  225 AYSIASQEL-SPEEATRN  241 (271)
Q Consensus       225 A~~~~~~~L-~~~~~~~~  241 (271)
                      +..-+-.-| ...|.+..
T Consensus       260 ~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081         260 VTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHHCCCCCHH
T ss_conf             788899998740876537


No 128
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51  E-value=7.5e-06  Score=53.53  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--
Q ss_conf             22110000233566999999974211111000000000-000000124577765433223554359999999538985--
Q gi|254780592|r  129 RAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE-LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD--  205 (271)
Q Consensus       129 ~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--  205 (271)
                      +.+...|.. .....+|..+...|++.+|...|.+++. ....+...+..++.+.+..+++..|...+++..+.+|..  
T Consensus        81 ~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~  159 (251)
T COG4700          81 EELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS  159 (251)
T ss_pred             HHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             887646137-8899999999984105666889999854656798899988898888616588888899998605976589


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             478889999999869989999999986291728665999999998321-2999999997
Q gi|254780592|r  206 SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRD-PWKKIAKARS  263 (271)
Q Consensus       206 ~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~-~~~~~a~a~~  263 (271)
                      ++....+|.++..+|++.+|+..++.+++..|...-..+...++..++ ....-++++.
T Consensus       160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             97258999999845880558999999998588777898999999971221678887999


No 129
>KOG3081 consensus
Probab=98.51  E-value=3.2e-05  Score=49.66  Aligned_cols=179  Identities=14%  Similarity=0.089  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             79999999999874100124466655663275--2100135555321000001125887642211000023356699999
Q gi|254780592|r   70 KMIGIVYADVLRRVGRTAQALAVMRQVAILYP--EDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV  147 (271)
Q Consensus        70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~  147 (271)
                      ..+...++..+..-++.+.-++-+.+.+....  .+...+..-+.++...|++++|+....+.     ...+....-..+
T Consensus        72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI  146 (299)
T KOG3081          72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQI  146 (299)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC-----CHHHHHHHHHHH
T ss_conf             899999998860800267788879999875014413899997668754278868999998521-----248899987799


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             9974211111000000000000000124577765433----223554359999999538985478889999999869989
Q gi|254780592|r  148 LAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLL----MGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMK  223 (271)
Q Consensus       148 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~  223 (271)
                      +.+..+.+.|....+++...+.+..  +..++.+++.    .+.+..|.-+|+..-+..|..+......|.+...+||++
T Consensus       147 ~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081         147 LLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHCCHH
T ss_conf             9987899999999999971135789--99999999999606324546899999983535997688706999989716999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999998629172866599999999832129
Q gi|254780592|r  224 EAYSIASQELSPEEATRNIKYIKSILSQRDPW  255 (271)
Q Consensus       224 eA~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~  255 (271)
                      ||+.+++.+|..++.+++.......+.+..|.
T Consensus       225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081         225 EAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999985347878999999999998189


No 130
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42  E-value=1.3e-06  Score=58.17  Aligned_cols=183  Identities=19%  Similarity=0.136  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH--HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             999999998540368543311799999984201999--999999999957----57879999999999874100124466
Q gi|254780592|r   19 VFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLE--VTSTIGLQYQSH----TKNKMIGIVYADVLRRVGRTAQALAV   92 (271)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~----P~~~~~~~~~a~~l~~~g~~~~A~~~   92 (271)
                      +.+++++.++||+......-...+.+..-.+..++.  -+.-+.+.+...    ......++..|..|-..|-..-|.--
T Consensus         8 ~~~~~~~~LagC~~~~~~~~~k~~~~~~~~qp~lqqEV~iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~D   87 (297)
T COG4785           8 CFVATALTLAGCSNQNETFWRKSEVLAVPLQPTLQQEVILARMSQILASRALTDEERAQLLFERGVLYDSLGLRALARND   87 (297)
T ss_pred             HHHHHHHHHHHHHCCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99999998775304667410356203346787488899999999999860488788889988612034224079998601


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             65566327521001355553210000011258876422110000233566999999974211111000000000000000
Q gi|254780592|r   93 MRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNES  172 (271)
Q Consensus        93 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~  172 (271)
                      |.+++.+.|+-+.+...+|..+...|+++.|.+.|+...+.||...-+..++|..+..-|++..|.+.+.+-...+|+++
T Consensus        88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCH
T ss_conf             45666349675899989999998602205799986667104775107776044023444751555999999984498980


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHHH-HHHHHCCCC
Q ss_conf             124577765433--22355435999-999953898
Q gi|254780592|r  173 SIVSNIAMSYLL--MGDLKTAEEKL-RFASQMIGA  204 (271)
Q Consensus       173 ~~~~~~~~~~~~--~g~~~~A~~~~-~~al~~~p~  204 (271)
                      ---   -+.|+.  .-++.+|...+ +++.+.+.+
T Consensus       168 fR~---LWLYl~E~k~dP~~A~tnL~qR~~~~d~e  199 (297)
T COG4785         168 FRS---LWLYLNEQKLDPKQAKTNLKQRAEKSDKE  199 (297)
T ss_pred             HHH---HHHHHHHHCCCHHHHHHHHHHHHHCCCHH
T ss_conf             789---99998761078689999999998705676


No 131
>KOG3617 consensus
Probab=98.41  E-value=2.1e-05  Score=50.78  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98420199999999999995757879999999999874100124466655663275210013555532100000112588
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD  125 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  125 (271)
                      .++.|.+++|...|++.-.-|        .+-..|...|.+++|.++.+.--.++  -...+..++.-+...++.+.|++
T Consensus       810 AieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Ale  879 (1416)
T KOG3617         810 AIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALE  879 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCCCHHHHHHHHHHCCCEE--HHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             998734889999999888887--------99999986100888888775104031--24568778788886212889998


Q ss_pred             HHHHHHH----------HHC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------
Q ss_conf             7642211----------000----------02335669999999742111110000000000------------------
Q gi|254780592|r  126 AINRAQR----------PDI----------PDWQLISAKGSVLAQMGKHSEALIEYERALEL------------------  167 (271)
Q Consensus       126 ~~~~a~~----------~~p----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~------------------  167 (271)
                      +|+++-.          .+|          .+...|.+.|..+...|+.+.|+..|..+...                  
T Consensus       880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~  959 (1416)
T KOG3617         880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAAR  959 (1416)
T ss_pred             HHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHH
T ss_conf             88751873878899988583889999985065289999999975243157889999876555542366763167358899


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---0000012457776543322355435999999
Q gi|254780592|r  168 ---SPNESSIVSNIAMSYLLMGDLKTAEEKLRFA  198 (271)
Q Consensus       168 ---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  198 (271)
                         ...+..+-+.+|..|...|++.+|+.+|.+|
T Consensus       960 iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617         960 IAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9886141788999999862247788899998998


No 132
>KOG1941 consensus
Probab=98.40  E-value=8.2e-05  Score=47.16  Aligned_cols=165  Identities=18%  Similarity=0.154  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHH------H
Q ss_conf             7999999999987410012446665566327521-----0013555532100000112588764221100002------3
Q gi|254780592|r   70 KMIGIVYADVLRRVGRTAQALAVMRQVAILYPED-----QEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPD------W  138 (271)
Q Consensus        70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~  138 (271)
                      .+++.+++..+.+.-++.+++.+-+--+.+.-..     ..+...++.....++.++++++.|+++.......      .
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941          83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999899889999985668998878742898785556503565777775137889999999999998765069840354


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
Q ss_conf             356699999997421111100000000000000----0------124577765433223554359999999538------
Q gi|254780592|r  139 QLISAKGSVLAQMGKHSEALIEYERALELSPNE----S------SIVSNIAMSYLLMGDLKTAEEKLRFASQMI------  202 (271)
Q Consensus       139 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~----~------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------  202 (271)
                      +....+|.++....++++|.-+..++.++....    +      .+++.++.++-.+|..-.|.++.+++.++.      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941         163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH
T ss_conf             13533889999987446777614769999875275605689999999999999998412113999999999999984777


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             98547888999999986998999999998629
Q gi|254780592|r  203 GADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       203 p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      +...+....+|.||...|+.+.|..-|+++..
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941         243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             98899999999998861307668999999998


No 133
>KOG4234 consensus
Probab=98.39  E-value=3.1e-06  Score=55.89  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             55321000001125887642211000023-----3566999999974211111000000000000000124577765433
Q gi|254780592|r  110 YGKSLANAGYLDEGLDAINRAQRPDIPDW-----QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLL  184 (271)
Q Consensus       110 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  184 (271)
                      -|.-+...|+|++|...|..++..-|..+     -.+.++|.++.+++.++.|+....+++++.|....++...+.+|.+
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234         101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             77776513407789999999998686630888999972058899875668989999876575084067999999999885


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             22355435999999953898547888999
Q gi|254780592|r  185 MGDLKTAEEKLRFASQMIGADSRIRQNLA  213 (271)
Q Consensus       185 ~g~~~~A~~~~~~al~~~p~~~~~~~~La  213 (271)
                      ...+++|+..|++.++.+|....++...+
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234         181 MEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             55178889999999871820689999998


No 134
>KOG1941 consensus
Probab=98.38  E-value=8e-06  Score=53.36  Aligned_cols=192  Identities=11%  Similarity=0.056  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC----------
Q ss_conf             7999999842019999999999999575787------999999999987410012446665566327521----------
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNK------MIGIVYADVLRRVGRTAQALAVMRQVAILYPED----------  103 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~------~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~----------  103 (271)
                      ..-+..++.-+.|+++.+.|+++++...++.      .+...+|..+.+..++++|..+..++.++....          
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr  205 (518)
T KOG1941         126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR  205 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             57777751378899999999999987650698403541353388999998744677761476999987527560568999


Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH------H
Q ss_conf             0013555532100000112588764221100------002335669999999742111110000000000000------0
Q gi|254780592|r  104 QEVLAAYGKSLANAGYLDEGLDAINRAQRPD------IPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN------E  171 (271)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~------~  171 (271)
                      .-++..++..+..+|+.-+|.+..+.+.+..      +.......-+|.+|...|+.+.|..-|+.+......      .
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq  285 (518)
T KOG1941         206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ  285 (518)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999984121139999999999999847779889999999999886130766899999999899875057788


Q ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCC----CC--HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             01245777654332235-----543599999995389----85--47888999999986998999999998
Q gi|254780592|r  172 SSIVSNIAMSYLLMGDL-----KTAEEKLRFASQMIG----AD--SRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       172 ~~~~~~~~~~~~~~g~~-----~~A~~~~~~al~~~p----~~--~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      ..++...+..+....-.     =+|+++-++++++..    ..  ...+..++.+|..+|.-++=...+.+
T Consensus       286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r  356 (518)
T KOG1941         286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR  356 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99987689899999876124454054688899999998535788899999799999850430668999999


No 135
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36  E-value=2.2e-05  Score=50.66  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHH--H
Q ss_conf             87999999999987410012446665566327521001355553210000011258876422110000233566999--9
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKG--S  146 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg--~  146 (271)
                      ..+.-+..+.-....|++.+|...++.++...|++..+...++.++...|+.+.|...+...-.......... ..+  .
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~  211 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIE  211 (304)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH-HHHHHH
T ss_conf             7788898766654165445589999999985845663777899999981885899999972850010457888-999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHH
Q ss_conf             999742111110000000000000001245777654332235543599999995389--854788899999998699899
Q gi|254780592|r  147 VLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG--ADSRIRQNLALVVGLQGRMKE  224 (271)
Q Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~La~~~~~~g~~~e  224 (271)
                      .+.+.....+ ...+......+|++..+...++..+...|+.+.|...+-..+..+-  .+..++..|-.++...|..|.
T Consensus       212 ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         212 LLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             HHHHHHCCCC-HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf             9999745997-789999987099988999999999997388799999999998750344376899999999996388987


Q ss_pred             HHHHHHHHC
Q ss_conf             999999862
Q gi|254780592|r  225 AYSIASQEL  233 (271)
Q Consensus       225 A~~~~~~~L  233 (271)
                      +...+++-|
T Consensus       291 ~~~~~RRkL  299 (304)
T COG3118         291 LVLAYRRKL  299 (304)
T ss_pred             HHHHHHHHH
T ss_conf             899999999


No 136
>KOG2610 consensus
Probab=98.35  E-value=5.1e-05  Score=48.44  Aligned_cols=152  Identities=14%  Similarity=0.031  Sum_probs=97.7

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHCCHHHH
Q ss_conf             4201999999999999957578799999999998741001244666556632-7521---00135555321000001125
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAIL-YPED---QEVLAAYGKSLANAGYLDEG  123 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~g~~~~A  123 (271)
                      ..|++.+|...+++.++..|.|.-++..--.++.-+|+.+.....+++.+.. +|+-   .-+.-.++..+...|-+++|
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610         115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             35664177888999987585035544544467874141442145799843345899857899888998667872550269


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887642211000023356699999997421111100000000000000----0124577765433223554359999999
Q gi|254780592|r  124 LDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNE----SSIVSNIAMSYLLMGDLKTAEEKLRFAS  199 (271)
Q Consensus       124 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al  199 (271)
                      .+..++++..++.+.=+....++++...+++.++.+.-.+.-..=...    .--+...+..++..+.|+.|++.|.+-+
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610         195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99998631478741688988999998402056579999853141212368876506888886410111357888887999


No 137
>KOG0376 consensus
Probab=98.33  E-value=1e-06  Score=58.86  Aligned_cols=121  Identities=12%  Similarity=0.014  Sum_probs=103.8

Q ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             11799999984201999999999999957578799999999998741001244666556632752100135555321000
Q gi|254780592|r   38 IPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANA  117 (271)
Q Consensus        38 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  117 (271)
                      .+..++.+.+...+|+.|+..|.++++++|++...+-+.+.++...+.+..|+.-+.++++.+|.....+...|.+...+
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376           6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHEEECHHHHHHHHHHHHHHCCCHHHHEEEECCHHHHHH
T ss_conf             41467765412001999999999998528863244230212343200033677877763540801233034311778757


Q ss_pred             CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf             0011258876422110000233566999999--9742111110
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDIPDWQLISAKGSVL--AQMGKHSEAL  158 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~--~~~~~~~~A~  158 (271)
                      +++.+|...|+......|+++.....+-.|-  .....++.++
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376          86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7799999999876623867688998789999999887641124


No 138
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=98.32  E-value=0.00011  Score=46.37  Aligned_cols=157  Identities=12%  Similarity=-0.008  Sum_probs=113.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHH---H
Q ss_conf             7879999999999874100124466655663275210---013555532100000112588764221100002335---6
Q gi|254780592|r   68 KNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ---EVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQL---I  141 (271)
Q Consensus        68 ~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~  141 (271)
                      .++..++..|......|++.+|+..|+++....|..+   .+...++.++...+++++|...+++-+...|.++..   +
T Consensus        30 ~~~~~~Y~~A~~~~~~~~y~~A~~~fe~l~~~yP~s~~A~qA~L~~ayayy~~~~y~~A~~~~~rFi~lyP~~~~v~Ya~  109 (243)
T PRK10866         30 NPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVM  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             99999999999999878999999999999986899767899999999998730778999999999998678999738999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH---H-------H--
Q ss_conf             699999997421111100000000000000012457776543322355435999999953898547---8-------8--
Q gi|254780592|r  142 SAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR---I-------R--  209 (271)
Q Consensus       142 ~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~-------~--  209 (271)
                      ...|.++...++     ..+.....           .-..-..++...+|...|++.+...|++.-   +       +  
T Consensus       110 Yl~gl~~~~~~~-----~~~~~~~~-----------~~~~~rD~~~~~~A~~~f~~li~~yP~S~Ya~dA~~r~~~lrn~  173 (243)
T PRK10866        110 YMRGLTNMALDD-----SALQGFFG-----------VDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR  173 (243)
T ss_pred             HHHHHHHHHCCH-----HHHHHHHC-----------CCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             998898774013-----58888743-----------25643076999999999999998789984589999999999999


Q ss_pred             -----HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             -----8999999986998999999998629172866
Q gi|254780592|r  210 -----QNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       210 -----~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                           ...|..|...|.+.-|..-++.++..-|...
T Consensus       174 LA~~El~Va~fY~kr~~y~AAi~R~~~vi~~Yp~t~  209 (243)
T PRK10866        174 LAKYEYSVAEYYTKRGAWVAVVNRVEGMLRDYPDTQ  209 (243)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999992656999999999997689996


No 139
>KOG4234 consensus
Probab=98.30  E-value=3.9e-06  Score=55.28  Aligned_cols=102  Identities=22%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             669999999742111110000000000000001-----245777654332235543599999995389854788899999
Q gi|254780592|r  141 ISAKGSVLAQMGKHSEALIEYERALELSPNESS-----IVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALV  215 (271)
Q Consensus       141 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~  215 (271)
                      .-.-|+-+...|++++|...|..+++.-|..+.     .+.+.|.+++.++..+.|+..+.++++++|.+..+..+.|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234          98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             98877776513407789999999998686630888999972058899875668989999876575084067999999999


Q ss_pred             HHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             998699899999999862917286659
Q gi|254780592|r  216 VGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       216 ~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
                      |..+.++++|+.-|++.+..+|.....
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234         178 YEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             885551788899999998718206899


No 140
>KOG2796 consensus
Probab=98.25  E-value=3.5e-05  Score=49.44  Aligned_cols=168  Identities=17%  Similarity=0.175  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHH------------CCCCC---------CHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             999999999874100124466655663------------27521---------001355553210000011258876422
Q gi|254780592|r   72 IGIVYADVLRRVGRTAQALAVMRQVAI------------LYPED---------QEVLAAYGKSLANAGYLDEGLDAINRA  130 (271)
Q Consensus        72 ~~~~~a~~l~~~g~~~~A~~~~~~al~------------~~p~~---------~~~~~~~~~~~~~~g~~~~A~~~~~~a  130 (271)
                      ..+-.|++....|.+.+.+.-+..+..            ..|+.         ..+-..+..++...|+|.-.+..+.+.
T Consensus       124 mR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~v  203 (366)
T KOG2796         124 MRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSV  203 (366)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEHHHHHHH
T ss_conf             99999998865699267799999999999999999882566042799999999999999999983630451109999999


Q ss_pred             HHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             1100-00233566999999974211111000000000000------0001245777654332235543599999995389
Q gi|254780592|r  131 QRPD-IPDWQLISAKGSVLAQMGKHSEALIEYERALELSP------NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG  203 (271)
Q Consensus       131 ~~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  203 (271)
                      ++.+ |.++.....+|.+-.+.|+.+.|...|...-+...      ....+..+.+.+++.++++..|...+.+.+..+|
T Consensus       204 i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~  283 (366)
T KOG2796         204 IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP  283 (366)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             86387306799999878888604388899899999987614323404678876344202213335999998850422489


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             854788899999998699899999999862917286
Q gi|254780592|r  204 ADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEAT  239 (271)
Q Consensus       204 ~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~  239 (271)
                      .++.+..+-|+++.-.|+..+|.++++..+...|..
T Consensus       284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796         284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             CCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             870220519999999877889999999876118862


No 141
>KOG4555 consensus
Probab=98.25  E-value=8.8e-06  Score=53.09  Aligned_cols=87  Identities=15%  Similarity=0.063  Sum_probs=38.1

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCHHHH
Q ss_conf             420199999999999995757879999999999874100124466655663275210----0135555321000001125
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ----EVLAAYGKSLANAGYLDEG  123 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~g~~~~A  123 (271)
                      ..|+++.|++.|.+++..-|+++.++.+.+.+++-.|+.++|+.-+++++++.-...    .++...|.+|..+|+.+.|
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A  134 (175)
T KOG4555          55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA  134 (175)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             50456789999999998543353866139999987288187899899999862862069999999999999993761888


Q ss_pred             HHHHHHHHHHH
Q ss_conf             88764221100
Q gi|254780592|r  124 LDAINRAQRPD  134 (271)
Q Consensus       124 ~~~~~~a~~~~  134 (271)
                      ...|..+-...
T Consensus       135 R~DFe~AA~LG  145 (175)
T KOG4555         135 RADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHC
T ss_conf             88699999867


No 142
>KOG2796 consensus
Probab=98.24  E-value=1.3e-05  Score=51.95  Aligned_cols=146  Identities=15%  Similarity=0.179  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCH------HHHHHHH
Q ss_conf             999999999987410012446665566327-521001355553210000011258876422110000------2335669
Q gi|254780592|r   71 MIGIVYADVLRRVGRTAQALAVMRQVAILY-PEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIP------DWQLISA  143 (271)
Q Consensus        71 ~~~~~~a~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~  143 (271)
                      .+-+-+..++.-.|++.-++..++++++.+ |.++.....+|++.++.|+.+.+...+++..+....      ..-...+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796         178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHHCCHHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999983630451109999999863873067999998788886043888998999999876143234046788763


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHH
Q ss_conf             999999742111110000000000000001245777654332235543599999995389854---7888999999
Q gi|254780592|r  144 KGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS---RIRQNLALVV  216 (271)
Q Consensus       144 lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~La~~~  216 (271)
                      .+.++...+++..|...+.+.+..+|.++.+.++.+.+++..|+...|+..++.++++.|...   ....||-.+|
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796         258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HHHEEECCCCHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             4420221333599999885042248987022051999999987788999999987611886210145888789899


No 143
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.23  E-value=0.00034  Score=43.33  Aligned_cols=157  Identities=13%  Similarity=0.067  Sum_probs=91.6

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             98420199999999999995757879999-99999987410012446665566327521001355553210000011258
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGI-VYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~-~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      .+-.|+++.|...|+..+ .+|.-...-+ .+-..-.+.|..+-|..+.+++..+-|.-+-+....-......|+|+.|+
T Consensus       130 al~eG~~~~Ar~kfeAMl-~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al  208 (531)
T COG3898         130 ALLEGDYEDARKKFEAML-DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL  208 (531)
T ss_pred             HHHCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf             886476187999999873-6838877767889999986021899999999987636677167999999998667868899


Q ss_pred             HHHHHHHHH---HCHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             876422110---000233---56699999-99742111110000000000000001245777654332235543599999
Q gi|254780592|r  125 DAINRAQRP---DIPDWQ---LISAKGSV-LAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRF  197 (271)
Q Consensus       125 ~~~~~a~~~---~p~~~~---~~~~lg~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  197 (271)
                      +..+.....   .+...+   .-..-+.. -.-..+...|.+....+.++.|+-...-..-+.++...|+..++-..++.
T Consensus       209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~  288 (531)
T COG3898         209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILET  288 (531)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99998888775261167789899998888877248867788999987503876336999999998742462433248899


Q ss_pred             HHHCCC
Q ss_conf             995389
Q gi|254780592|r  198 ASQMIG  203 (271)
Q Consensus       198 al~~~p  203 (271)
                      +-+..|
T Consensus       289 aWK~eP  294 (531)
T COG3898         289 AWKAEP  294 (531)
T ss_pred             HHHCCC
T ss_conf             873499


No 144
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23  E-value=2.9e-05  Score=49.93  Aligned_cols=126  Identities=14%  Similarity=-0.010  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHH
Q ss_conf             55553210000011258876422110000233566999999974211111000000000000000-12457776543322
Q gi|254780592|r  108 AAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNES-SIVSNIAMSYLLMG  186 (271)
Q Consensus       108 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~g  186 (271)
                      ..-+.-....|++.++...+..++...|...+....++.++...|+.+.|...+...-....+.. ..+......+.+..
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             98766654165445589999999985845663777899999981885899999972850010457888999999999974


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             355435999999953898547888999999986998999999998629
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      +..+ ...++..+..+|++.++.+.||..+...|+.++|.+.+=..+.
T Consensus       218 ~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         218 ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             CCCC-HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             5997-7899999870999889999999999973887999999999987


No 145
>KOG2610 consensus
Probab=98.21  E-value=2.8e-05  Score=50.00  Aligned_cols=182  Identities=17%  Similarity=0.099  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HCHH---HHHHHHHHHHHHH
Q ss_conf             99999987410012446665566327521001355553210000011258876422110-0002---3356699999997
Q gi|254780592|r   75 VYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRP-DIPD---WQLISAKGSVLAQ  150 (271)
Q Consensus        75 ~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~---~~~~~~lg~~~~~  150 (271)
                      .-+.++.-.|++.+|-...++.++.+|.+-.++..--+.+..+|+.+.-...+++.+.. ++..   .-..-.++..+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610         108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             26787633566417788899998758503554454446787414144214579984334589985789988899866787


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHCCCHHHH
Q ss_conf             4211111000000000000000124577765433223554359999999538985-----47888999999986998999
Q gi|254780592|r  151 MGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD-----SRIRQNLALVVGLQGRMKEA  225 (271)
Q Consensus       151 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~La~~~~~~g~~~eA  225 (271)
                      .|-+++|.+...+++++++.+.=+....+-.+...|+..++.++.++--. +-..     +.-|...|+.+.+.+.++.|
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610         188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-DWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             HCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             25502699999863147874168898899999840205657999985314-12123688765068888864101113578


Q ss_pred             HHHHHHHCC----CCCCCHHHHHH--HHHHHHHHHHHH
Q ss_conf             999998629----17286659999--999983212999
Q gi|254780592|r  226 YSIASQELS----PEEATRNIKYI--KSILSQRDPWKK  257 (271)
Q Consensus       226 ~~~~~~~L~----~~~~~~~~~~l--~~~l~~~~~~~~  257 (271)
                      +++|.+.+-    .+.+.+...++  .++....+-|.+
T Consensus       267 leIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~k  304 (491)
T KOG2610         267 LEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRK  304 (491)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88887999987511331455544335567767888887


No 146
>KOG0551 consensus
Probab=98.09  E-value=3.9e-05  Score=49.16  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=42.5

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9998420199999999999995757879----999999999874100124466655663275210013555532100000
Q gi|254780592|r   44 LENMNHEQLLEVTSTIGLQYQSHTKNKM----IGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY  119 (271)
Q Consensus        44 ~~~~~~~~~~~A~~~~~~al~~~P~~~~----~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  119 (271)
                      ..++...+|..|+..|.+.++..-.|++    .+.+.|-+....|++..|+.-..+++..+|.+..++..-+.|+..+.+
T Consensus        89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~  168 (390)
T KOG0551          89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER  168 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             89877756768999998887641899237899884299999999989999999999861487304434356689999988


Q ss_pred             HHHHHHHHHHH
Q ss_conf             11258876422
Q gi|254780592|r  120 LDEGLDAINRA  130 (271)
Q Consensus       120 ~~~A~~~~~~a  130 (271)
                      +.+|..+.+..
T Consensus       169 ~~~a~nw~ee~  179 (390)
T KOG0551         169 FAEAVNWCEEG  179 (390)
T ss_pred             HHHHHHHHHHH
T ss_conf             88877777653


No 147
>KOG3617 consensus
Probab=98.06  E-value=0.00039  Score=43.03  Aligned_cols=147  Identities=18%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999874100124466655663275210013555532100000112588764221100002335669999999742111
Q gi|254780592|r   76 YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHS  155 (271)
Q Consensus        76 ~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~  155 (271)
                      .|..-...|-.++|..+|.+....+        .+...|...|.|++|.+..+.--...  ....+++.+..+...++.+
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617         806 VAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCCCHHHHHHHHHHCCCEE--HHHHHHHHHHHHHHHCCHH
T ss_conf             7899998734889999999888887--------99999986100888888775104031--2456877878888621288


Q ss_pred             HHHHHHHHCCCC----------CC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf             110000000000----------00----------0001245777654332235543599999995---------------
Q gi|254780592|r  156 EALIEYERALEL----------SP----------NESSIVSNIAMSYLLMGDLKTAEEKLRFASQ---------------  200 (271)
Q Consensus       156 ~A~~~~~~~~~~----------~p----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---------------  200 (271)
                      .|++.|+++-..          .|          .+...|.++|..+.-.|+.+.|+.+|..|-.               
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~  955 (1416)
T KOG3617         876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD  955 (1416)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCH
T ss_conf             99988875187387889998858388999998506528999999997524315788999987655554236676316735


Q ss_pred             ------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             ------38985478889999999869989999999986
Q gi|254780592|r  201 ------MIGADSRIRQNLALVVGLQGRMKEAYSIASQE  232 (271)
Q Consensus       201 ------~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~  232 (271)
                            ....+..+-+.||..|...|+..+|...|.++
T Consensus       956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617         956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999886141788999999862247788899998998


No 148
>KOG4555 consensus
Probab=98.06  E-value=2.4e-05  Score=50.40  Aligned_cols=90  Identities=27%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHH
Q ss_conf             9999999742111110000000000000001245777654332235543599999995389854----788899999998
Q gi|254780592|r  143 AKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS----RIRQNLALVVGL  218 (271)
Q Consensus       143 ~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~La~~~~~  218 (271)
                      .-|..+...|+.+.|++.|.+++.+-|...++++|.++++-.+|+.++|+..+.+|+++..+..    .++...|.+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555          48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99889885045678999999999854335386613999998728818789989999986286206999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             69989999999986
Q gi|254780592|r  219 QGRMKEAYSIASQE  232 (271)
Q Consensus       219 ~g~~~eA~~~~~~~  232 (271)
                      +|+.+.|..-|+.+
T Consensus       128 ~g~dd~AR~DFe~A  141 (175)
T KOG4555         128 LGNDDAARADFEAA  141 (175)
T ss_pred             HCCHHHHHHHHHHH
T ss_conf             37618888869999


No 149
>KOG0376 consensus
Probab=98.02  E-value=6.3e-06  Score=53.96  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999874100124466655663275210013555532100000112588764221100002335669999999742
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG  152 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~  152 (271)
                      +-+.+......+.++.|+..+-++++++|++...+...+..+...+++-.|+..+.++++.+|.....|...|......+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376           7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHEEECHHHHHHHHHHHHHHCCCHHHHEEEECCHHHHHHH
T ss_conf             14677654120019999999999985288632442302123432000336778777635408012330343117787577


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             11111000000000000000124577765
Q gi|254780592|r  153 KHSEALIEYERALELSPNESSIVSNIAMS  181 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  181 (271)
                      ++.+|...|+....+.|+++.+...+..+
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376          87 EFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             79999999987662386768899878999


No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.01  E-value=0.00095  Score=40.63  Aligned_cols=57  Identities=25%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             776543322355435999999953898------547888999999986998999999998629
Q gi|254780592|r  178 IAMSYLLMGDLKTAEEKLRFASQMIGA------DSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       178 ~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      .+.+++..|+++.|...++........      ..++...++.++...|+.++|...+.+++.
T Consensus       697 ~ar~~l~~g~~~~A~~~l~~l~~~a~~~~~~~~~~~~~ll~A~a~~~~g~~~~A~~~l~~AL~  759 (903)
T PRK04841        697 IARAQILLGQFDEAEIVLEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSDAQRALLEALK  759 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999829979999999999999987275346999999999999987999999999999999


No 151
>KOG4642 consensus
Probab=98.00  E-value=7.1e-06  Score=53.67  Aligned_cols=88  Identities=11%  Similarity=-0.020  Sum_probs=81.7

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99842019999999999999575787999999999987410012446665566327521001355553210000011258
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      ...-...|..|+..|.+++..+|..+..+-+.|.++.+..+++....-..++++++|+.......+|..+.....+++|.
T Consensus        19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642          19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             CCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             02530111468999999885489730244547888887620026666178898607287899999888887523660789


Q ss_pred             HHHHHHHH
Q ss_conf             87642211
Q gi|254780592|r  125 DAINRAQR  132 (271)
Q Consensus       125 ~~~~~a~~  132 (271)
                      ..+.++..
T Consensus        99 ~~Lqra~s  106 (284)
T KOG4642          99 KVLQRAYS  106 (284)
T ss_pred             HHHHHHHH
T ss_conf             99999998


No 152
>KOG1914 consensus
Probab=97.99  E-value=0.0011  Score=40.34  Aligned_cols=197  Identities=11%  Similarity=0.024  Sum_probs=126.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCC---
Q ss_conf             9999999575787999999999987410--------------0124466655663275-210013555532100000---
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGR--------------TAQALAVMRQVAILYP-EDQEVLAAYGKSLANAGY---  119 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~---  119 (271)
                      .+++++..-+-.|++|+..+.-+...++              .+++.+++++++...- .+...+..++......-+   
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~  346 (656)
T KOG1914         267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK  346 (656)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999999743799999999999986689887423521134589999999998788777889999998766887514305


Q ss_pred             HHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             1125887642211000023-356699999997421111100000000000000012457776-54332235543599999
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDW-QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM-SYLLMGDLKTAEEKLRF  197 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~~~~g~~~~A~~~~~~  197 (271)
                      .+.....+++.+.....+. -.+..+-+.-.+..-...|...|.++.+..-....++..-|. -|..++|...|...|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914         347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             44307999998732214874302699999998640788999999985356774135678899999862781488999998


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf             99538985478889999999869989999999986291-7286659999999983212
Q gi|254780592|r  198 ASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSP-EEATRNIKYIKSILSQRDP  254 (271)
Q Consensus       198 al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~-~~~~~~~~~l~~~l~~~~~  254 (271)
                      -+...++.+.........+...|+-..+..++++++.. -+.+........++.-...
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~  484 (656)
T KOG1914         427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN  484 (656)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8875599769999999999983862108999999872158866668999999999872


No 153
>KOG1308 consensus
Probab=97.98  E-value=1.8e-06  Score=57.35  Aligned_cols=94  Identities=12%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99998420199999999999995757879999999999874100124466655663275210013555532100000112
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      +.+.++.|.++.|++.+.++++++|.....+...+.++...++...|+.-+..+++++|+...-+...+.....+|+|++
T Consensus       121 A~ealn~G~~~~ai~~~t~ai~lnp~~A~l~~kR~sv~lkl~kp~aairD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308         121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHH
T ss_conf             89873276433331155312036994344105534100223687346540245541683102355303489987202287


Q ss_pred             HHHHHHHHHHHHCH
Q ss_conf             58876422110000
Q gi|254780592|r  123 GLDAINRAQRPDIP  136 (271)
Q Consensus       123 A~~~~~~a~~~~p~  136 (271)
                      +...+..+...+..
T Consensus       201 aa~dl~~a~kld~d  214 (377)
T KOG1308         201 AAHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             77799999861654


No 154
>KOG0545 consensus
Probab=97.97  E-value=0.00015  Score=45.46  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6699999997421111100000000------------------0000000124577765433223554359999999538
Q gi|254780592|r  141 ISAKGSVLAQMGKHSEALIEYERAL------------------ELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMI  202 (271)
Q Consensus       141 ~~~lg~~~~~~~~~~~A~~~~~~~~------------------~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  202 (271)
                      ....|+-+...|++.+|...|..++                  +++......+.|+.++++..|+|-+++......+...
T Consensus       181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~  260 (329)
T KOG0545         181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH  260 (329)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98750146662217789999999999999887404899818999987633778867778744878999999889998508


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             98547888999999986998999999998629172866599
Q gi|254780592|r  203 GADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       203 p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      |++..+++..|.+....=+.+||.+-+.++|..+|+-+.+.
T Consensus       261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545         261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             85089999987787753688888889999986195667899


No 155
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97  E-value=0.00016  Score=45.36  Aligned_cols=93  Identities=18%  Similarity=0.037  Sum_probs=33.4

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             5553210000011258876422110000---2335669999999742111110000000000000001245777654332
Q gi|254780592|r  109 AYGKSLANAGYLDEGLDAINRAQRPDIP---DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLM  185 (271)
Q Consensus       109 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  185 (271)
                      .++..+...+++++|...++.++....+   ..-.-..++.+...+|.++.|+..+.......=. ...-...|.+++..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~k  172 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHC
T ss_conf             99999986342999999999987145257899999999999999860388899987230111078-89999742699972


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             23554359999999538
Q gi|254780592|r  186 GDLKTAEEKLRFASQMI  202 (271)
Q Consensus       186 g~~~~A~~~~~~al~~~  202 (271)
                      |+.++|...|+++++..
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CCHHHHHHHHHHHHHCC
T ss_conf             86599999999998715


No 156
>KOG2471 consensus
Probab=97.87  E-value=4e-05  Score=49.08  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             88999999986998999999998629
Q gi|254780592|r  209 RQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       209 ~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      +++||..+..+|.+|+|.+++.++..
T Consensus       622 ~~nLa~a~alq~~~dqAk~ll~~aat  647 (696)
T KOG2471         622 FANLAAALALQGHHDQAKSLLTHAAT  647 (696)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99899999872441789999998887


No 157
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=97.83  E-value=0.002  Score=38.60  Aligned_cols=120  Identities=10%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH------------------HHHHHHHHHCCCCCCHHHH
Q ss_conf             8420199999999999995757879999999999874100124------------------4666556632752100135
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQA------------------LAVMRQVAILYPEDQEVLA  108 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~  108 (271)
                      -..+..++|....+.-+..+|++..+++..|.+-...+.+..+                  ..+.++.+ ..-++.-++.
T Consensus        43 ~~~n~~~ea~~~~~~hl~~~~~sI~alY~~gil~l~~~~~~d~~l~~ll~~F~~~~kw~ivE~i~~~iL-~y~e~~~AL~  121 (906)
T PRK06330         43 KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLLDSFKQNLKWAIVEHICDKIL-LYGENKLALY  121 (906)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCHHHHH
T ss_conf             732417999999999985080036999998889861045632659999999986130069999999999-8531078999


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             555321000001125887642211000023356699999997421111100000000000
Q gi|254780592|r  109 AYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELS  168 (271)
Q Consensus       109 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~  168 (271)
                      .++.+|....+.+++...+++....|-.+++..-.+|..+... +.+.|+.+|++++...
T Consensus       122 ~la~~y~~~~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~~rf  180 (906)
T PRK06330        122 TLAEAYAKLKKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAIYRF  180 (906)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_conf             9999999835774389999999971344668999998888740-2688999999999999


No 158
>KOG1585 consensus
Probab=97.81  E-value=0.0021  Score=38.46  Aligned_cols=189  Identities=17%  Similarity=0.141  Sum_probs=126.7

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH-----HHHHH
Q ss_conf             999998420199999999999995757879------9999999998741001244666556632752100-----13555
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKM------IGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE-----VLAAY  110 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~------~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~  110 (271)
                      -+...-+..+|++|...+.++.+-.-+|..      ++-..|..+....++.++..+++++..++-++..     .-...
T Consensus        37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK  116 (308)
T KOG1585          37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK  116 (308)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999851357888999999999988321387888889999999999887279999999999999970995469999999


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHH
Q ss_conf             53210000011258876422110000------2335669999999742111110000000000------00000124577
Q gi|254780592|r  111 GKSLANAGYLDEGLDAINRAQRPDIP------DWQLISAKGSVLAQMGKHSEALIEYERALEL------SPNESSIVSNI  178 (271)
Q Consensus       111 ~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~  178 (271)
                      +.-.....++++|++.|+++...-..      ..+.+...+.++.+...+++|-..+.+-...      .+.....+...
T Consensus       117 Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~  196 (308)
T KOG1585         117 AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAA  196 (308)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99886238888999999999999850534878889998754573335775688999998635999986112389999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             76543322355435999999953----898547888999999986998999999998
Q gi|254780592|r  179 AMSYLLMGDLKTAEEKLRFASQM----IGADSRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       179 ~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      ...++...||..|..+++...+.    .|++.+...+|-.. ...|+.++...++..
T Consensus       197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~s  252 (308)
T KOG1585         197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSS  252 (308)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHCC
T ss_conf             99972088899999983523027664674778999999987-533788999999727


No 159
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80  E-value=0.0022  Score=38.36  Aligned_cols=195  Identities=14%  Similarity=0.035  Sum_probs=122.9

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCHHHHH
Q ss_conf             4201999999999999957578--799999999998741001244666556632752100-1355553210000011258
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKN--KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE-VLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~--~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~A~  124 (271)
                      ..||-..|...-.+.-+.-..|  |-+++.-+..-.-.|+++.|..-|+-- --+|+... .+..+..--...|..+.|.
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAM-l~dPEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAM-LDDPETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             167568999999998765424645899999988988647618799999987-3683887776788999998602189999


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8764221100002335669999999742111110000000000000001--------24577765433223554359999
Q gi|254780592|r  125 DAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESS--------IVSNIAMSYLLMGDLKTAEEKLR  196 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~g~~~~A~~~~~  196 (271)
                      .+..++-...|..+=.+...-......|+++.|++......+..--...        .+.-.+...+ ..|...|...-.
T Consensus       175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~  253 (531)
T COG3898         175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDAL  253 (531)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHH
T ss_conf             9999987636677167999999998667868899999988887752611677898999988888772-488677889999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             9995389854788899999998699899999999862917286659999
Q gi|254780592|r  197 FASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYI  245 (271)
Q Consensus       197 ~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l  245 (271)
                      +++++.|+....-..-+..+...|+..++-.+++.+...+| +..+..+
T Consensus       254 ~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~l  301 (531)
T COG3898         254 EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALL  301 (531)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CHHHHHH
T ss_conf             87503876336999999998742462433248899873499-8489999


No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.77  E-value=0.0012  Score=40.09  Aligned_cols=81  Identities=20%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             00001245777654332235543599999995389854788899999998699899999999862917286659999999
Q gi|254780592|r  169 PNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSI  248 (271)
Q Consensus       169 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~  248 (271)
                      +..+.++..++...+.+|+.++|..++.++.... .+.-.|.-+|.++...|+.+.|.+.|-++.-.++......+...+
T Consensus       409 ~~~~riyeAlAl~al~~~~~~~A~~~L~~~~~~~-~Svl~YILlgK~aEl~G~~~~A~e~Y~~Af~~~~s~~tl~l~enL  487 (512)
T PRK10153        409 NVLSRIYEALAVQALVKGDTDEAYQALNKAIELE-MSWLNYVLLGKVAELKGDNRLAADAYSTAFNLRPGENTYYLIENL  487 (512)
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             8872889999999984799999999998675645-569999999999996499668899999998038838999998625


Q ss_pred             HH
Q ss_conf             98
Q gi|254780592|r  249 LS  250 (271)
Q Consensus       249 l~  250 (271)
                      ..
T Consensus       488 vF  489 (512)
T PRK10153        488 VF  489 (512)
T ss_pred             CC
T ss_conf             30


No 161
>PRK11906 transcriptional regulator; Provisional
Probab=97.76  E-value=8.6e-05  Score=47.01  Aligned_cols=145  Identities=12%  Similarity=0.085  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHH---CCH------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf             124466655663275---2100135555321000---001------1258876422110000233566999999974211
Q gi|254780592|r   87 AQALAVMRQVAILYP---EDQEVLAAYGKSLANA---GYL------DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKH  154 (271)
Q Consensus        87 ~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~---g~~------~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~  154 (271)
                      .+|+..|.+.....|   .+..-+..++.|+..+   |.+      ++|.+..+++.+.++.++.+...+|.+-.-.|++
T Consensus       275 ~rAl~if~~~~n~s~~q~~~t~~Yc~LAEChlSlAl~G~se~e~A~~kA~e~~d~a~~i~~~n~qaLgllgLIsgL~~q~  354 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA  354 (458)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
T ss_conf             99999999874167887566665011999999999846227889999999999998836777767889999986134236


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHH
Q ss_conf             1110000000000000001245777654332235543599999995389854788899999-9986998999999998
Q gi|254780592|r  155 SEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALV-VGLQGRMKEAYSIASQ  231 (271)
Q Consensus       155 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~-~~~~g~~~eA~~~~~~  231 (271)
                      .-+...|+++--+.|+..+.++..+...+..|+.++|.....+.++++|....+-..---+ ..--.-.+.+++.+=+
T Consensus       355 ~Vs~~LFeQA~ll~p~s~di~yy~~~~~F~~g~leea~~~I~ksL~leP~r~~a~i~k~~v~~y~~~p~~n~i~~~~~  432 (458)
T PRK11906        355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             698999987414699863312133353563374088999999986149401002456777651269985212678763


No 162
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=97.75  E-value=0.0021  Score=38.57  Aligned_cols=137  Identities=15%  Similarity=0.103  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHCCHHHHHHHH
Q ss_conf             9999999999985403685433117999999842019999999999999575787999999-999987410012446665
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVY-ADVLRRVGRTAQALAVMR   94 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~-a~~l~~~g~~~~A~~~~~   94 (271)
                      ..+.+++.+++++||++..+.....     .+...-...+.-++.++-+..+++-..|..+ +.++.+.|+.++|...+.
T Consensus        13 r~l~~illa~vla~C~t~~~~~~~~-----~lq~~a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~   87 (604)
T COG3107          13 RLLTPILLALVLAGCSTFLPSGSVV-----LLQGTANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLN   87 (604)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHH-----HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             0038999999997604678998601-----11678211199999997633701566499999999997478288999998


Q ss_pred             HHH-HCCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-CH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             566-327521-0013555532100000112588764221100-00--233566999999974211111
Q gi|254780592|r   95 QVA-ILYPED-QEVLAAYGKSLANAGYLDEGLDAINRAQRPD-IP--DWQLISAKGSVLAQMGKHSEA  157 (271)
Q Consensus        95 ~al-~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~--~~~~~~~lg~~~~~~~~~~~A  157 (271)
                      ++- .+.|.. .+.-...+.+.....++..|...+.+....+ |.  ..+.|...+.+....|+.-++
T Consensus        88 ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a  155 (604)
T COG3107          88 QLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEARGDSIDA  155 (604)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             65623798999999999999998422729999998520321167788999999999998613215899


No 163
>pfam08424 DUF1740 Protein of unknown function (DUF1740). This is a family of eukaryotic proteins of unknown function.
Probab=97.74  E-value=0.00082  Score=41.01  Aligned_cols=89  Identities=9%  Similarity=0.008  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------------CCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             99999999957578799999999998741--------------00124466655663-2752100135555321000001
Q gi|254780592|r   56 TSTIGLQYQSHTKNKMIGIVYADVLRRVG--------------RTAQALAVMRQVAI-LYPEDQEVLAAYGKSLANAGYL  120 (271)
Q Consensus        56 ~~~~~~al~~~P~~~~~~~~~a~~l~~~g--------------~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~g~~  120 (271)
                      ...+.+.++.+|.|.+.|+.+.......-              -.+.=++++++|++ .+|++...+..+-.......+.
T Consensus         5 ~~eln~~v~e~P~di~~Wleli~~Qd~~~~~~~~~~~~~~~~~laE~KlsilEkAL~~~np~~~~Lll~~l~~~~~~w~~   84 (231)
T pfam08424         5 NAELNRLVRENPEDIDAWIELIRHQEELLRRGSGLLTKAERKQLAEIKLSILEKALKEHNPDSERLLLGLLEEGEKVWDT   84 (231)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH
T ss_conf             89999998719625999999999999886413322336789999999999999999985899789999999999985787


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             125887642211000023356699
Q gi|254780592|r  121 DEGLDAINRAQRPDIPDWQLISAK  144 (271)
Q Consensus       121 ~~A~~~~~~a~~~~p~~~~~~~~l  144 (271)
                      ++....+++.+..+|.+...|..+
T Consensus        85 ~~l~~~We~~l~~~p~~~~LW~~y  108 (231)
T pfam08424        85 DELLSRWEKVLKQNPGSPSLWRKY  108 (231)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             999999999999889975999999


No 164
>KOG0545 consensus
Probab=97.74  E-value=0.00038  Score=43.09  Aligned_cols=106  Identities=16%  Similarity=0.044  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHH------------------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             0013555532100000112588764221------------------1000023356699999997421111100000000
Q gi|254780592|r  104 QEVLAAYGKSLANAGYLDEGLDAINRAQ------------------RPDIPDWQLISAKGSVLAQMGKHSEALIEYERAL  165 (271)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~------------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~  165 (271)
                      ..++...|.-++..|+|.+|...|..++                  +++......+.++..|+...|++-++++.-...+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545         178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             28898750146662217789999999999999887404899818999987633778867778744878999999889998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             00000001245777654332235543599999995389854788
Q gi|254780592|r  166 ELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIR  209 (271)
Q Consensus       166 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  209 (271)
                      ...|.+..+++..|.+....=+..+|.+.|.++++.+|.-..+.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545         258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             50885089999987787753688888889999986195667899


No 165
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72  E-value=0.0022  Score=38.42  Aligned_cols=129  Identities=14%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q ss_conf             799999984201999999999999957578799---9999999987410012446665566327521---0013555532
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMI---GIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGKS  113 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~---~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~  113 (271)
                      ..+.....+.+.. +......+....+|.+..+   .+.+|..+...|++++|...++.++....+.   .-+-..++++
T Consensus        57 Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArv  135 (207)
T COG2976          57 YQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARV  135 (207)
T ss_pred             HHHHHHHHHCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999855770-259999999861563589999999999999863429999999999871452578999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             100000112588764221100002335669999999742111110000000000000
Q gi|254780592|r  114 LANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN  170 (271)
Q Consensus       114 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~  170 (271)
                      +...|.+|+|+..++...... -.+.....+|.++..+|+..+|...|.+++...+.
T Consensus       136 q~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         136 QLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             998603888999872301110-78899997426999728659999999999871577


No 166
>KOG4642 consensus
Probab=97.71  E-value=6.9e-05  Score=47.61  Aligned_cols=92  Identities=15%  Similarity=0.011  Sum_probs=70.9

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999874100124466655663275210013555532100000112588764221100002335669999999742111
Q gi|254780592|r   76 YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHS  155 (271)
Q Consensus        76 ~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~  155 (271)
                      -|..+....+++.|+..|-+++.++|..+.++...+.+++++.+|+.+.....++++++|+.....+.+|........++
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642          16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             CCCCCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             24602530111468999999885489730244547888887620026666178898607287899999888887523660


Q ss_pred             HHHHHHHHCCCC
Q ss_conf             110000000000
Q gi|254780592|r  156 EALIEYERALEL  167 (271)
Q Consensus       156 ~A~~~~~~~~~~  167 (271)
                      .|+..+.++..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642          96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
T ss_conf             789999999988


No 167
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=97.66  E-value=0.0037  Score=37.03  Aligned_cols=158  Identities=9%  Similarity=0.061  Sum_probs=101.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHH
Q ss_conf             99999957578799999999998741001244666556632752100135555321000001125887642211000023
Q gi|254780592|r   59 IGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDW  138 (271)
Q Consensus        59 ~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  138 (271)
                      -++.+ ...++..++..+|.+|.+..+.+++..+++++++.+-+++.....++..+..- +.++|..+|++|+...-..-
T Consensus       107 ~~~iL-~y~e~~~AL~~la~~y~~~~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~~rf~~~k  184 (906)
T PRK06330        107 CDKIL-LYGENKLALYTLAEAYAKLKKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAIYRFIKKK  184 (906)
T ss_pred             HHHHH-HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHH
T ss_conf             99999-85310789999999999835774389999999971344668999998888740-26889999999999998775


Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             3566999999974-----2111110000000000--00000124577765433223554359999999538985478889
Q gi|254780592|r  139 QLISAKGSVLAQM-----GKHSEALIEYERALEL--SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQN  211 (271)
Q Consensus       139 ~~~~~lg~~~~~~-----~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  211 (271)
                      + +...-.++...     .+++--....+.....  .......+..+-..|....+++.++..++..++.++.+..++.+
T Consensus       185 ~-~~~~~eiw~klv~~~~dd~~~f~~i~~~~~~~~~~~~~~~l~~~i~~~y~~~e~~~~~i~~lK~iL~~d~~~~kaR~~  263 (906)
T PRK06330        185 Q-YVGIEEIWSKLVHNNSDDFDFFLRIERKILGHREFTRLVGLLYDIVEPYKQLENWDEVIYILKKILEHDNKSNKAREE  263 (906)
T ss_pred             H-HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             4-122889999998608631789999999998764347036641676788761276889999999997335010688999


Q ss_pred             HHHHHHHC
Q ss_conf             99999986
Q gi|254780592|r  212 LALVVGLQ  219 (271)
Q Consensus       212 La~~~~~~  219 (271)
                      |..+|...
T Consensus       264 li~~~k~k  271 (906)
T PRK06330        264 LIRFYKEK  271 (906)
T ss_pred             HHHHHHHH
T ss_conf             99999986


No 168
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.63  E-value=0.004  Score=36.78  Aligned_cols=84  Identities=20%  Similarity=0.201  Sum_probs=37.0

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC------HHHHHHHHHHH
Q ss_conf             8420199999999999995757879-----999999999874100124466655663275210------01355553210
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKM-----IGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ------EVLAAYGKSLA  115 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~-----~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~  115 (271)
                      ...++++.+......++..-|.+..     +...++..+...|++++|...+..+........      ......+.+..
T Consensus       463 ~~~~~~~~a~~~a~~al~~l~~~~~~~~~~~~~~l~~~~~~~G~l~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~i~~  542 (903)
T PRK04841        463 INDGDPEEAERLAKLALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             85899999999999997536763479899999999999997799999999999999999983853579999999999999


Q ss_pred             HHCCHHHHHHHHHHH
Q ss_conf             000011258876422
Q gi|254780592|r  116 NAGYLDEGLDAINRA  130 (271)
Q Consensus       116 ~~g~~~~A~~~~~~a  130 (271)
                      ..|+...|...++++
T Consensus       543 ~~G~l~~A~~~~~~a  557 (903)
T PRK04841        543 AQGFLQAAYETQEKA  557 (903)
T ss_pred             HCCCHHHHHHHHHHH
T ss_conf             787899999999999


No 169
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=97.62  E-value=0.00025  Score=44.20  Aligned_cols=87  Identities=9%  Similarity=0.168  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----
Q ss_conf             999999999999957578799999999998741001----------24466655663275210013555532100-----
Q gi|254780592|r   52 LLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTA----------QALAVMRQVAILYPEDQEVLAAYGKSLAN-----  116 (271)
Q Consensus        52 ~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~-----  116 (271)
                      |+.|...-+..+++||.|++.+.+-|-++....++.          .|++-+++++.++|....++--+|.++-.     
T Consensus         7 FE~aRk~AE~~y~~nP~DadnLtRWGGALLELsqFq~~~ds~~Mi~dAisKlEeAL~InP~khdalWclGNA~TS~~Fl~   86 (186)
T pfam06552         7 FEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPDAKKMIQDAISKLEEALVINPKKHDALWCIGNAYTSHAFLT   86 (186)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCC
T ss_conf             99999999998852984588898888999999861264479999999999999987139887533330054110151317


Q ss_pred             ------HCCHHHHHHHHHHHHHHHCHHH
Q ss_conf             ------0001125887642211000023
Q gi|254780592|r  117 ------AGYLDEGLDAINRAQRPDIPDW  138 (271)
Q Consensus       117 ------~g~~~~A~~~~~~a~~~~p~~~  138 (271)
                            .+.+++|..+|+++...+|.+.
T Consensus        87 pD~~~A~~~F~kA~~~Fq~AvdeeP~Ne  114 (186)
T pfam06552        87 PDQTEAKDNFDKATQFFQQAVDEQPDND  114 (186)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             8789999889999999999863498618


No 170
>PRK11906 transcriptional regulator; Provisional
Probab=97.60  E-value=0.00052  Score=42.22  Aligned_cols=128  Identities=15%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             11258876422110---000233566999999974---------211111000000000000000124577765433223
Q gi|254780592|r  120 LDEGLDAINRAQRP---DIPDWQLISAKGSVLAQM---------GKHSEALIEYERALELSPNESSIVSNIAMSYLLMGD  187 (271)
Q Consensus       120 ~~~A~~~~~~a~~~---~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~  187 (271)
                      ...|+..|.+....   .|....-|..++.|+...         ....+|.+...++.++++.++.++.-+|.+-...|+
T Consensus       274 l~rAl~if~~~~n~s~~q~~~t~~Yc~LAEChlSlAl~G~se~e~A~~kA~e~~d~a~~i~~~n~qaLgllgLIsgL~~q  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
T ss_conf             99999999987416788756666501199999999984622788999999999999883677776788999998613423


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             554359999999538985478889999999869989999999986291728665999999
Q gi|254780592|r  188 LKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKS  247 (271)
Q Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~  247 (271)
                      ..-+...|++|--+.|...++++..+......|+.++|..+.+++|..+|...-....+.
T Consensus       354 ~~Vs~~LFeQA~ll~p~s~di~yy~~~~~F~~g~leea~~~I~ksL~leP~r~~a~i~k~  413 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE  413 (458)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf             669899998741469986331213335356337408899999998614940100245677


No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59  E-value=0.0047  Score=36.37  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             111000000000000000124577765433----22----35543599999995--389854788899999998699899
Q gi|254780592|r  155 SEALIEYERALELSPNESSIVSNIAMSYLL----MG----DLKTAEEKLRFASQ--MIGADSRIRQNLALVVGLQGRMKE  224 (271)
Q Consensus       155 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g----~~~~A~~~~~~al~--~~p~~~~~~~~La~~~~~~g~~~e  224 (271)
                      ..+++.++++++..|++.-+.......+..    .+    +...--..+++...  ..+..+++|.-+|......|+.++
T Consensus       351 ~~~idLl~~~~~~ePdn~Yv~Ae~yi~~~~~~~l~~~~~~~l~~Ln~~l~~~~~~~~~~~~~riyeAlAl~al~~~~~~~  430 (512)
T PRK10153        351 NKGSDLLEEILKSEPDFTYALAEKALADHVRQSLQPLDEKQLAALNTELDNIVALPGVNVLSRIYEALAVQALVKGDTDE  430 (512)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf             99999999999729983899999999999998549888999999999999987332468872889999999984799999


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986291728665999999998321299999999
Q gi|254780592|r  225 AYSIASQELSPEEATRNIKYIKSILSQRDPWKKIAKAR  262 (271)
Q Consensus       225 A~~~~~~~L~~~~~~~~~~~l~~~l~~~~~~~~~a~a~  262 (271)
                      |..++.++...+.+--....++...+-++.-..++.++
T Consensus       431 A~~~L~~~~~~~~Svl~YILlgK~aEl~G~~~~A~e~Y  468 (512)
T PRK10153        431 AYQALNKAIELEMSWLNYVLLGKVAELKGDNRLAADAY  468 (512)
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999867564556999999999999649966889999


No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.58  E-value=0.0048  Score=36.34  Aligned_cols=144  Identities=13%  Similarity=-0.067  Sum_probs=97.8

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHH---
Q ss_conf             87999999999987410012446665566327521---001355553210000011258876422110000233566---
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLIS---  142 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~---  142 (271)
                      -+..+++-|....+.|++++|+..|+.+...+|..   ..+...++.++...++++.|....++-+...|.++..-.   
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             89999999999986378899999999998709998112899999999988135589999999999987899987169999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HH-----------
Q ss_conf             9999999742111110000000000000001245777654332235543599999995389854---78-----------
Q gi|254780592|r  143 AKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS---RI-----------  208 (271)
Q Consensus       143 ~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~-----------  208 (271)
                      ..|.++...                          +-.....+.-..+|...|++.++.-|++.   ++           
T Consensus       113 lkgLs~~~~--------------------------i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L  166 (254)
T COG4105         113 LKGLSYFFQ--------------------------IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL  166 (254)
T ss_pred             HHHHHHHCC--------------------------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             999987526--------------------------775444779999999999999987889702355999999999998


Q ss_pred             ---HHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             ---889999999869989999999986291728
Q gi|254780592|r  209 ---RQNLALVVGLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       209 ---~~~La~~~~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                         =...|..|..-|.+--|..-++..+..-|.
T Consensus       167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~  199 (254)
T COG4105         167 AGHEMAIARYYLKRGAYVAAINRFEEVLENYPD  199 (254)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             899999999999905769999999999871455


No 173
>KOG0530 consensus
Probab=97.58  E-value=0.0023  Score=38.30  Aligned_cols=172  Identities=13%  Similarity=0.059  Sum_probs=134.9

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH-HHHHH
Q ss_conf             201999999999999957578799999999998741-0012446665566327521001355553210000011-25887
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVG-RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD-EGLDA  126 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-~A~~~  126 (271)
                      .+.-..|......++..+|.|-.+|--.-.++...+ +..+-+.++.+.++.+|.+-++|...-.+....|++. .-++.
T Consensus        56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef  135 (318)
T KOG0530          56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF  135 (318)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             65687899989999972854214899999999986888999999999998738652147799999999806941103789


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHH
Q ss_conf             6422110000233566999999974211111000000000000000124577765433-22-----35543599999995
Q gi|254780592|r  127 INRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLL-MG-----DLKTAEEKLRFASQ  200 (271)
Q Consensus       127 ~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-~g-----~~~~A~~~~~~al~  200 (271)
                      ....+..+.++.-+|..+-.+....+.++.-.......++.+-.+.++|+..-..... .|     ..+.-+.+..+.+.
T Consensus       136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~  215 (318)
T KOG0530         136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKIL  215 (318)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99997111110026689999999875078899999999987620220222025888824677659999999999999997


Q ss_pred             CCCCCHHHHHHHHHHHHH-CC
Q ss_conf             389854788899999998-69
Q gi|254780592|r  201 MIGADSRIRQNLALVVGL-QG  220 (271)
Q Consensus       201 ~~p~~~~~~~~La~~~~~-~g  220 (271)
                      ..|++..+|..|..++.. .|
T Consensus       216 ~vP~NeSaWnYL~G~l~~d~g  236 (318)
T KOG0530         216 LVPNNESAWNYLKGLLELDSG  236 (318)
T ss_pred             HCCCCCCHHHHHHHHHHHCCC
T ss_conf             288874189999999996147


No 174
>pfam02259 FAT FAT domain. The FAT domain is named after FRAP, ATM and TRRAP.
Probab=97.57  E-value=0.0014  Score=39.56  Aligned_cols=33  Identities=18%  Similarity=0.006  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             235543599999995389854788899999998
Q gi|254780592|r  186 GDLKTAEEKLRFASQMIGADSRIRQNLALVVGL  218 (271)
Q Consensus       186 g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~  218 (271)
                      ++.++.+..|+.|++.+|+...+|..+|..+..
T Consensus       272 ~~~~~il~~y~~A~~~~~~w~Kaw~~wa~~~~~  304 (351)
T pfam02259       272 GKKDEILKAYRTATQFDDQWYKAWHSWALANFE  304 (351)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             579999999999998786648999999999999


No 175
>KOG1308 consensus
Probab=97.49  E-value=0.00021  Score=44.60  Aligned_cols=86  Identities=14%  Similarity=0.075  Sum_probs=39.7

Q ss_pred             HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74100124466655663275210013555532100000112588764221100002335669999999742111110000
Q gi|254780592|r   82 RVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEY  161 (271)
Q Consensus        82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  161 (271)
                      ..|.++.|++.+-.+++++|.....+...+.++..++++..|...+..++..+|+...-+-.+|.....+|++++|...+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~A~l~~kR~sv~lkl~kp~aairD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308         126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             CCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf             27643333115531203699434410553410022368734654024554168310235530348998720228777799


Q ss_pred             HHCCCC
Q ss_conf             000000
Q gi|254780592|r  162 ERALEL  167 (271)
Q Consensus       162 ~~~~~~  167 (271)
                      ..+.++
T Consensus       206 ~~a~kl  211 (377)
T KOG1308         206 ALACKL  211 (377)
T ss_pred             HHHHHC
T ss_conf             999861


No 176
>KOG1585 consensus
Probab=97.47  E-value=0.0067  Score=35.43  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----CHHHHH
Q ss_conf             9999999998741001244666556632752100------13555532100000112588764221100-----002335
Q gi|254780592|r   72 IGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE------VLAAYGKSLANAGYLDEGLDAINRAQRPD-----IPDWQL  140 (271)
Q Consensus        72 ~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~~~~  140 (271)
                      .+..-+.+++...++++|...+.++.+-+..+..      ++...+.....+..+.++...++++....     |..+..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585          33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999985135788899999999998832138788888999999999988727999999999999997099546999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCC--HHH
Q ss_conf             6699999997421111100000000000000------012457776543322355435999999----9538985--478
Q gi|254780592|r  141 ISAKGSVLAQMGKHSEALIEYERALELSPNE------SSIVSNIAMSYLLMGDLKTAEEKLRFA----SQMIGAD--SRI  208 (271)
Q Consensus       141 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a----l~~~p~~--~~~  208 (271)
                      -...+.-.....++++|+..|.+++.+...+      .+.+...+..++....+++|...+.+-    .+...-+  -..
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~  192 (308)
T KOG1585         113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA  192 (308)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999988623888899999999999985053487888999875457333577568899999863599998611238999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             8899999998699899999999862
Q gi|254780592|r  209 RQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       209 ~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      +..+.+++....++..|+.+++..-
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~  217 (308)
T KOG1585         193 YVAAILVYLYAHDYVQAEKCYRDCS  217 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             9999999720888999999835230


No 177
>KOG0530 consensus
Probab=97.46  E-value=0.0014  Score=39.53  Aligned_cols=167  Identities=11%  Similarity=0.001  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             01999999999999957578799999999998741001-24466655663275210013555532100000112588764
Q gi|254780592|r   50 EQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTA-QALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAIN  128 (271)
Q Consensus        50 ~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  128 (271)
                      .++.+-.++++..++.+|+|-.+|-..-.+....|++. +-+++.+..+..+..+-.+|...-.+...-+.++.-+....
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~  171 (318)
T KOG0530          92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD  171 (318)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999998738652147799999999806941103789999971111100266899999998750788999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH
Q ss_conf             2211000023356699999997-4-----211111000000000000000124577765433-22--3554359999999
Q gi|254780592|r  129 RAQRPDIPDWQLISAKGSVLAQ-M-----GKHSEALIEYERALELSPNESSIVSNIAMSYLL-MG--DLKTAEEKLRFAS  199 (271)
Q Consensus       129 ~a~~~~p~~~~~~~~lg~~~~~-~-----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-~g--~~~~A~~~~~~al  199 (271)
                      ..+..+-.+-.+|+.+-.+... .     -..+.-+....+.+...|++.++|..+...+.. .|  -...-........
T Consensus       172 ~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~  251 (318)
T KOG0530         172 ELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY  251 (318)
T ss_pred             HHHHHHHHCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99987620220222025888824677659999999999999997288874189999999996147768804999999986


Q ss_pred             -HCCCCCHHHHHHHHHHH
Q ss_conf             -53898547888999999
Q gi|254780592|r  200 -QMIGADSRIRQNLALVV  216 (271)
Q Consensus       200 -~~~p~~~~~~~~La~~~  216 (271)
                       +.+-.++...--+..+|
T Consensus       252 ~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530         252 LQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             HCCCCCCHHHHHHHHHHH
T ss_conf             145778865799999999


No 178
>pfam03704 BTAD Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Probab=97.45  E-value=0.0017  Score=39.13  Aligned_cols=61  Identities=18%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             0124577765433223554359999999538985478889999999869989999999986
Q gi|254780592|r  172 SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQE  232 (271)
Q Consensus       172 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~  232 (271)
                      ..+...++..+...|++++|+..+++++..+|-+-.++..|-.++...|+..+|...|++.
T Consensus        62 ~~a~~~l~~~~~~~g~~~~a~~~~~~~l~~dPl~E~~~~~Lm~a~~~~G~~~~Al~~Y~~~  122 (146)
T pfam03704        62 LRALERRIEADLRLGRHEEALAELRALVALHPLRERLHRQLMRALYRSGRQAEALRVYRRL  122 (146)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999999988598302199999999868874299999999999889999999999999


No 179
>KOG1258 consensus
Probab=97.40  E-value=0.0082  Score=34.89  Aligned_cols=173  Identities=14%  Similarity=0.036  Sum_probs=78.4

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             42019999999999999575787999999999987410012446665566327-52100135555321000001125887
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILY-PEDQEVLAAYGKSLANAGYLDEGLDA  126 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~  126 (271)
                      ..|++......+++++.-=..-++.|++++.-....|+.+-|..++..+.+.+ |..+......+.+....|+++.|...
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~  388 (577)
T KOG1258         309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI  388 (577)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             40517889999999873775238899999999997176267779997432110778707999999999962469999999


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             64221100002335669999999742111110---000000000000---0012457776-5433223554359999999
Q gi|254780592|r  127 INRAQRPDIPDWQLISAKGSVLAQMGKHSEAL---IEYERALELSPN---ESSIVSNIAM-SYLLMGDLKTAEEKLRFAS  199 (271)
Q Consensus       127 ~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~---~~~~~~~~~~p~---~~~~~~~~~~-~~~~~g~~~~A~~~~~~al  199 (271)
                      +++....-|...+.-.....+..++|+.+.+.   ..+....+-..+   ....+...+. .+.-.++.+.|...+.+++
T Consensus       389 lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~  468 (577)
T KOG1258         389 LQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAN  468 (577)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99988657763556778876999834245566899999886045447544688999999999998227889999999752


Q ss_pred             HCCCCCHHHHHHHHHHHHHCC
Q ss_conf             538985478889999999869
Q gi|254780592|r  200 QMIGADSRIRQNLALVVGLQG  220 (271)
Q Consensus       200 ~~~p~~~~~~~~La~~~~~~g  220 (271)
                      +..|.+...+..+-.+....+
T Consensus       469 ~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258         469 DILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HCCCCCHHHHHHHHHHHHHCC
T ss_conf             017720799999989998377


No 180
>pfam10300 IML2 Putative mitochondrial outer membrane protein. This is a family of proteins conserved from fungi to humans. Members of this family also carry a TPR_2 domain pfam07719 at their C-terminus. Many of them are annotated as being mitochondrial outer membrane protein IML2.
Probab=97.38  E-value=0.0047  Score=36.35  Aligned_cols=105  Identities=15%  Similarity=0.074  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0011258876422110000233566999999974211111000000000000000----124577765433223554359
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNES----SIVSNIAMSYLLMGDLKTAEE  193 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~~~~~~~~g~~~~A~~  193 (271)
                      +..+.+.+.+......-|+..-.....|.+....|+.++|+..+..+.+....-.    -.++.++..+..+.++++|..
T Consensus       230 ~~~~~a~~lL~~~~~~yP~s~l~l~~~gR~~~~~g~l~~Ai~~~~~~~~~~~~~kQ~~~lc~~El~w~~~~~~~w~~A~~  309 (446)
T pfam10300       230 GPLEEAEALLEPSRKRFPNSALWLFFEARIESLKGNLDEALELFEECIESQSEWKQIHHLCYWELAWCHVFLHRWKQAAN  309 (446)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999988538994689999999999737999999999986744654499999999999999999978999999


Q ss_pred             HHHHHHHCCCCCH-HHHHHHHHHHHHCCCH
Q ss_conf             9999995389854-7888999999986998
Q gi|254780592|r  194 KLRFASQMIGADS-RIRQNLALVVGLQGRM  222 (271)
Q Consensus       194 ~~~~al~~~p~~~-~~~~~La~~~~~~g~~  222 (271)
                      ++....+.+.=+. -..+..|.++...++.
T Consensus       310 ~~~~L~~~s~WSka~Y~Y~~a~c~~~~~~~  339 (446)
T pfam10300       310 YFLLLSDESKWSKALYAYLAAACLLMLGRE  339 (446)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             999999845418999999999999865330


No 181
>PRK10941 putative transcriptional regulator; Provisional
Probab=97.32  E-value=0.0029  Score=37.66  Aligned_cols=81  Identities=10%  Similarity=-0.004  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             12457776543322355435999999953898547888999999986998999999998629172866599999999832
Q gi|254780592|r  173 SIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQR  252 (271)
Q Consensus       173 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~~  252 (271)
                      ..+.++-.+|....+++.|+.+.+..+...|+++.-+...|.+|.++|.+..|...++.-+...|.+.....++..+..-
T Consensus       182 RmL~nLK~~~~~e~~~~~AL~~~e~lL~l~Pddp~EiRDRGli~~qL~c~~~Al~DLe~fle~~P~dp~ae~ik~qi~~l  261 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI  261 (269)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999998511499999999999862969979999999999984994899999999999785972899999999998


Q ss_pred             H
Q ss_conf             1
Q gi|254780592|r  253 D  253 (271)
Q Consensus       253 ~  253 (271)
                      +
T Consensus       262 ~  262 (269)
T PRK10941        262 E  262 (269)
T ss_pred             H
T ss_conf             6


No 182
>KOG0551 consensus
Probab=97.31  E-value=0.0013  Score=39.82  Aligned_cols=106  Identities=14%  Similarity=0.147  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             2335669999999742111110000000000000001----245777654332235543599999995389854788899
Q gi|254780592|r  137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESS----IVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNL  212 (271)
Q Consensus       137 ~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~L  212 (271)
                      .++.+-.-|+-|.+.+++..|..+|.+.++..-.+++    .+.|.+.+....|+|+.++..+.+++.++|.+..++++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551          80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99988887689877756768999998887641899237899884299999999989999999999861487304434356


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             999998699899999999862917286659
Q gi|254780592|r  213 ALVVGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       213 a~~~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
                      |.++..+.++++|..-.+..+..+......
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551         160 AKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             689999988888777776531101778999


No 183
>KOG1586 consensus
Probab=97.27  E-value=0.012  Score=33.97  Aligned_cols=161  Identities=12%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             HCCHHHHHHHHHHHHHHCCC-----CH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH
Q ss_conf             20199999999999995757-----87-999999999987410012446665566327521001------3555532100
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTK-----NK-MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEV------LAAYGKSLAN  116 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~-----~~-~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~~  116 (271)
                      ..++..|-..|-++-+.+-+     +. ..+...+.+ ++.+++.+|+.++++++++..+..+.      +..++.+|..
T Consensus        47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs  125 (288)
T KOG1586          47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES  125 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8868887899999999988608811378899999887-621584889999999999998522777877511139999862


Q ss_pred             H-CCHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH
Q ss_conf             0-001125887642211000023------356699999997421111100000000000000012-------45777654
Q gi|254780592|r  117 A-GYLDEGLDAINRAQRPDIPDW------QLISAKGSVLAQMGKHSEALIEYERALELSPNESSI-------VSNIAMSY  182 (271)
Q Consensus       117 ~-g~~~~A~~~~~~a~~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~  182 (271)
                      - .++++|+.+|+.+-+.-..+.      ..+.--+..-...+++.+|+..|++.....-++...       ....|.++
T Consensus       126 dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh  205 (288)
T KOG1586         126 DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH  205 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             27779999999999999970015552688999999999999999999999999999986036487767888999999886


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             3322355435999999953898547888
Q gi|254780592|r  183 LLMGDLKTAEEKLRFASQMIGADSRIRQ  210 (271)
Q Consensus       183 ~~~g~~~~A~~~~~~al~~~p~~~~~~~  210 (271)
                      +...|.-.+...+++..+.+|..++.+.
T Consensus       206 l~~~D~v~a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586         206 LCKADEVNAQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             7302077899999988753986464088


No 184
>KOG3824 consensus
Probab=97.26  E-value=0.00072  Score=41.35  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             420199999999999995757879999999999874100124466655663275210013555532
Q gi|254780592|r   48 NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKS  113 (271)
Q Consensus        48 ~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  113 (271)
                      ..|+.+.|...|.-++..+|.++++++.+|.......+.-+|-.+|-+++..+|.+.+++.+..+.
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824         128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCC
T ss_conf             643468899999999830899779999976888851446766556420232179855877503115


No 185
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21  E-value=0.013  Score=33.62  Aligned_cols=93  Identities=14%  Similarity=0.049  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC----HHHH
Q ss_conf             433117999999842019999999999999575787--9999999999874100124466655663275210----0135
Q gi|254780592|r   35 RISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNK--MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ----EVLA  108 (271)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~--~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~  108 (271)
                      ........++...+.+..++|...|...-+.+-.+.  -+.++.|.++.+.|+...|+..|.++-...|-..    .+..
T Consensus        57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             32589999999987079668999999998648885569999999999861264788999899885257876013679999


Q ss_pred             HHHHHHHHHCCHHHHHHHH
Q ss_conf             5553210000011258876
Q gi|254780592|r  109 AYGKSLANAGYLDEGLDAI  127 (271)
Q Consensus       109 ~~~~~~~~~g~~~~A~~~~  127 (271)
                      .-+..+...|-|++.....
T Consensus       137 raa~lLvD~gsy~dV~srv  155 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRV  155 (221)
T ss_pred             HHHHHHHCCCCHHHHHHHH
T ss_conf             8789874356488899874


No 186
>KOG1914 consensus
Probab=97.19  E-value=0.013  Score=33.73  Aligned_cols=146  Identities=10%  Similarity=0.052  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             012446665566327521-00135555321000001125887642211000023356699999-9974211111000000
Q gi|254780592|r   86 TAQALAVMRQVAILYPED-QEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV-LAQMGKHSEALIEYER  163 (271)
Q Consensus        86 ~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~  163 (271)
                      .+..-+++++++.....+ .-+++.+-..-.+..-...|...|.++.+........+..-+.+ |.-.++.+-|...|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914         347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             44307999998732214874302699999998640788999999985356774135678899999862781488999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             00000000012457776543322355435999999953--8985-47888999999986998999999998
Q gi|254780592|r  164 ALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM--IGAD-SRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       164 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      .+...++++....-+...+...|+-..+...|++++..  +|+. .++|...-.--..-|+..-..++-++
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR  497 (656)
T KOG1914         427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR  497 (656)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             88755997699999999999838621089999998721588666689999999998722549999999999


No 187
>KOG2471 consensus
Probab=97.18  E-value=0.0038  Score=36.94  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             1245777654332235543599999995389854788899999
Q gi|254780592|r  173 SIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALV  215 (271)
Q Consensus       173 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~  215 (271)
                      .+++|.|..|+..|++-.|..+|.+++...-.+++.|.+||.+
T Consensus       336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471         336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             4677423799863890799999999999982183899999999


No 188
>KOG4507 consensus
Probab=97.15  E-value=0.004  Score=36.84  Aligned_cols=110  Identities=15%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             2110000233566999999974211111000000000000000--12457776543322355435999999953898547
Q gi|254780592|r  130 AQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNES--SIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR  207 (271)
Q Consensus       130 a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  207 (271)
                      +.+..+.++.....-+..+...|+..+|..++..++-..+...  .++..+|.++.+.|...+|.-.+..|+.-.|.-..
T Consensus       205 glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~  284 (886)
T KOG4507         205 GLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS  284 (886)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             65418436889988999999738854445789987651783001005767999998712421113331134057753356


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             88899999998699899999999862917286
Q gi|254780592|r  208 IRQNLALVVGLQGRMKEAYSIASQELSPEEAT  239 (271)
Q Consensus       208 ~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~  239 (271)
                      -++.++.++..+|.+....-+|..++..+|.-
T Consensus       285 n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507         285 NYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             62018999999866202665356664038530


No 189
>KOG4507 consensus
Probab=97.14  E-value=0.0069  Score=35.33  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=14.3

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5532100000112588764221100002335669999999742111
Q gi|254780592|r  110 YGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHS  155 (271)
Q Consensus       110 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~  155 (271)
                      +|.++.+.|.--+|--++--++...|.....+..++.++...+.+.
T Consensus       255 laTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N  300 (886)
T KOG4507         255 LATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYN  300 (886)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999987124211133311340577533566201899999986620


No 190
>pfam03704 BTAD Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Probab=97.14  E-value=0.0038  Score=36.96  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999874100124466655663275210013555532100000112588764221100002335669999999742
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG  152 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~  152 (271)
                      +...|......|++.+|+..+.+++.+.-.+.-.-..       .+.|-..     ...............++..+...|
T Consensus         9 ~~~~a~~a~~~gd~~~a~~~~~~Al~LyrG~~L~~~~-------~~~W~~~-----~r~~l~~~~~~a~~~l~~~~~~~g   76 (146)
T pfam03704         9 LVRAGRRALAAGDPAEAARLLRAALALWRGPALADVP-------AGPWLEA-----ERERLEELRLRALERRIEADLRLG   76 (146)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC-------CCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999887899999999999999855898877898-------5168999-----999999999999999999998859


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1111100000000000000012457776543322355435999999
Q gi|254780592|r  153 KHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA  198 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  198 (271)
                      +++.++......+..+|-+..++..+-.++...|+..+|+..|++.
T Consensus        77 ~~~~a~~~~~~~l~~dPl~E~~~~~Lm~a~~~~G~~~~Al~~Y~~~  122 (146)
T pfam03704        77 RHEEALAELRALVALHPLRERLHRQLMRALYRSGRQAEALRVYRRL  122 (146)
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8302199999999868874299999999999889999999999999


No 191
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=97.10  E-value=0.0013  Score=39.88  Aligned_cols=104  Identities=17%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             00124466655663275210013555532100000112588764221100002335669999999742111110000000
Q gi|254780592|r   85 RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERA  164 (271)
Q Consensus        85 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~  164 (271)
                      -++.|....+.....+|.+..-+..+|-++..+-++...-+                        .....++|+.-++.+
T Consensus         6 fFE~aRk~AE~~y~~nP~DadnLtRWGGALLELsqFq~~~d------------------------s~~Mi~dAisKlEeA   61 (186)
T pfam06552         6 FFEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPD------------------------AKKMIQDAISKLEEA   61 (186)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHH------------------------HHHHHHHHHHHHHHH
T ss_conf             99999999999885298458889888899999986126447------------------------999999999999998


Q ss_pred             CCCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             00000000124577765433-----------2235543599999995389854788899
Q gi|254780592|r  165 LELSPNESSIVSNIAMSYLL-----------MGDLKTAEEKLRFASQMIGADSRIRQNL  212 (271)
Q Consensus       165 ~~~~p~~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~L  212 (271)
                      +.++|.-.++++-+|.++.-           ...+++|..+|++|+..+|+|.-.+..|
T Consensus        62 L~InP~khdalWclGNA~TS~~Fl~pD~~~A~~~F~kA~~~Fq~AvdeeP~NelYrKsL  120 (186)
T pfam06552        62 LVINPKKHDALWCIGNAYTSHAFLTPDQTEAKDNFDKATQFFQQAVDEQPDNDLYRKSL  120 (186)
T ss_pred             HCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             71398875333300541101513178789999889999999999863498618999999


No 192
>KOG3824 consensus
Probab=97.09  E-value=0.0018  Score=38.95  Aligned_cols=144  Identities=13%  Similarity=0.135  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--HHHHHHHHCCHHH---------HHHHHHHHHHHCCCC-
Q ss_conf             2787569999989999999999999854036854331179--9999984201999---------999999999957578-
Q gi|254780592|r    2 IILFCPVILFLKKIKCIVFLIPLLLFSSCHLNPRISIPDP--ESLENMNHEQLLE---------VTSTIGLQYQSHTKN-   69 (271)
Q Consensus         2 ~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------A~~~~~~al~~~P~~-   69 (271)
                      +|.|+-+..-++.+.++..+..++.+-.-+ .++......  .......+.+...         +...-....+-+|.+ 
T Consensus        35 iii~v~~sl~~~~f~a~s~~~tv~k~~q~~-~~p~~~~l~~~~~ya~~~~~~~~~~~~~yd~~~~~~v~at~te~~pa~~  113 (472)
T KOG3824          35 IIISVLVSLICQHFVAVSTLHTVIKPKQKS-SPPPSNRLNSPEKYAPAVQKPTFLVDPIYDEQTAVPVMSTQTENDPAKV  113 (472)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHCHHHHC-CCCCCCCCCCHHHCCCCCCCCHHHCCCHHCCCCCCCCCHHHCCCCCHHH
T ss_conf             325788876546778777888861545306-8998334567022030336814320430022013420012123672206


Q ss_pred             --HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             --79999999999874100124466655663275210013555532100000112588764221100002335669999
Q gi|254780592|r   70 --KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGS  146 (271)
Q Consensus        70 --~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~  146 (271)
                        ...-++.|.-..+.|+.++|..+|+.++.+.|.+++++..+|.......+.-+|-..|-+++...|.+.+++.++..
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824         114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHC
T ss_conf             9999999998898864346889999999983089977999997688885144676655642023217985587750311


No 193
>KOG1550 consensus
Probab=97.06  E-value=0.019  Score=32.65  Aligned_cols=173  Identities=12%  Similarity=0.010  Sum_probs=116.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHC--
Q ss_conf             199999999999995757879999999999874-----100124466655663-----27521001355553210000--
Q gi|254780592|r   51 QLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRV-----GRTAQALAVMRQVAI-----LYPEDQEVLAAYGKSLANAG--  118 (271)
Q Consensus        51 ~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~-----g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~g--  118 (271)
                      +...|..+++.+-+..  +..+...+|.++..-     .++++|+.+++.+..     ..-..+.+...+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550         227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             0678899999987627--88999998999986255766689999999999988625666504742247999999818987


Q ss_pred             ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHH
Q ss_conf             ---0112588764221100002335669999999742---11111000000000000000124577765433----2235
Q gi|254780592|r  119 ---YLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMG---KHSEALIEYERALELSPNESSIVSNIAMSYLL----MGDL  188 (271)
Q Consensus       119 ---~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~g~~  188 (271)
                         +++.|...+.++....  .+.....+|.++....   +...|...|..+...  ....+..+++.+|..    .-+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550         305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             5124999999999998559--9048999889876276321388999999999975--99899999999997477868877


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf             5435999999953898547888999999986-998999999998
Q gi|254780592|r  189 KTAEEKLRFASQMIGADSRIRQNLALVVGLQ-GRMKEAYSIASQ  231 (271)
Q Consensus       189 ~~A~~~~~~al~~~p~~~~~~~~La~~~~~~-g~~~eA~~~~~~  231 (271)
                      ..|..+++++.+.+  ++.+.+.++..+..- ++++.+...+..
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~  422 (552)
T KOG1550         381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLY  422 (552)
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             89999999999827--8867999999998535652278999999


No 194
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.06  E-value=0.019  Score=32.65  Aligned_cols=98  Identities=19%  Similarity=0.068  Sum_probs=62.3

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHCCCCCCHHHHHH------HHHHHHHCC
Q ss_conf             8420199999999999995757879999999999874100124466655-663275210013555------532100000
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQ-VAILYPEDQEVLAAY------GKSLANAGY  119 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~------~~~~~~~g~  119 (271)
                      ...++...+...+..++..||.++.+..+++.++...|....+...+.+ +....|.+.......      ++.+..+|+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  157 (620)
T COG3914          78 APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR  157 (620)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             42466266899876567549552669998888899842478889999988876074007787667778999899998524


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             1125887642211000023356699
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAK  144 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~l  144 (271)
                      ..++...+.+.....|..++....+
T Consensus       158 ~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         158 TAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999988543306667678


No 195
>pfam10300 IML2 Putative mitochondrial outer membrane protein. This is a family of proteins conserved from fungi to humans. Members of this family also carry a TPR_2 domain pfam07719 at their C-terminus. Many of them are annotated as being mitochondrial outer membrane protein IML2.
Probab=97.03  E-value=0.02  Score=32.47  Aligned_cols=107  Identities=9%  Similarity=-0.023  Sum_probs=73.3

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHCCHHHHH
Q ss_conf             2019999999999999575787999999999987410012446665566327521----001355553210000011258
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED----QEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      .++...|...+....++.|+..-.++.-|.++...|+.++|+..+++++.....-    .-.+..++.++.-+.+|++|.
T Consensus       229 ~~~~~~a~~lL~~~~~~yP~s~l~l~~~gR~~~~~g~l~~Ai~~~~~~~~~~~~~kQ~~~lc~~El~w~~~~~~~w~~A~  308 (446)
T pfam10300       229 EGPLEEAEALLEPSRKRFPNSALWLFFEARIESLKGNLDEALELFEECIESQSEWKQIHHLCYWELAWCHVFLHRWKQAA  308 (446)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98899999999998853899468999999999973799999999998674465449999999999999999997899999


Q ss_pred             HHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             87642211000023356-69999999742111
Q gi|254780592|r  125 DAINRAQRPDIPDWQLI-SAKGSVLAQMGKHS  155 (271)
Q Consensus       125 ~~~~~a~~~~p~~~~~~-~~lg~~~~~~~~~~  155 (271)
                      ..+.+..+........| +..|.++...++.+
T Consensus       309 ~~~~~L~~~s~WSka~Y~Y~~a~c~~~~~~~~  340 (446)
T pfam10300       309 NYFLLLSDESKWSKALYAYLAAACLLMLGREE  340 (446)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf             99999998454189999999999998653301


No 196
>PRK10941 putative transcriptional regulator; Provisional
Probab=96.96  E-value=0.0036  Score=37.07  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             35669999999742111110000000000000001245777654332235543599999995389854788899999
Q gi|254780592|r  139 QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALV  215 (271)
Q Consensus       139 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~  215 (271)
                      ....++=.+|...++++.|..+.+..+...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+-.-..++
T Consensus       182 RmL~nLK~~~~~e~~~~~AL~~~e~lL~l~Pddp~EiRDRGli~~qL~c~~~Al~DLe~fle~~P~dp~ae~ik~qi  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999998511499999999999862969979999999999984994899999999999785972899999999


No 197
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.94  E-value=0.01  Score=34.37  Aligned_cols=143  Identities=19%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             HHHHHHCCHHH-HHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             99984201999-9999999999575787999999--99998741001244666556632752100135555321000001
Q gi|254780592|r   44 LENMNHEQLLE-VTSTIGLQYQSHTKNKMIGIVY--ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL  120 (271)
Q Consensus        44 ~~~~~~~~~~~-A~~~~~~al~~~P~~~~~~~~~--a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  120 (271)
                      .+.++.+.... ++..+..-+..+|.++..++..  ...+...+....+.-.+..++..+|+...+..+++..+...|..
T Consensus        38 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~  117 (620)
T COG3914          38 LEWLNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ  117 (620)
T ss_pred             HHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99851567356788998713705787778999999875124246626689987656754955266999888889984247


Q ss_pred             HHHHHHHHH-HHHHHCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             125887642-211000023356699------999997421111100000000000000012457776543322
Q gi|254780592|r  121 DEGLDAINR-AQRPDIPDWQLISAK------GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMG  186 (271)
Q Consensus       121 ~~A~~~~~~-a~~~~p~~~~~~~~l------g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g  186 (271)
                      ..+...+.. +....|.+.+....+      +......++..++.....+..+..|..+.+...+......+.
T Consensus       118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c  190 (620)
T COG3914         118 FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC  190 (620)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8889999988876074007787667778999899998524899999999998854330666767889899754


No 198
>pfam04910 DUF654 Protein of unknown function, DUF654. This family includes a number of poorly characterized eukaryotic proteins.
Probab=96.89  E-value=0.027  Score=31.73  Aligned_cols=148  Identities=15%  Similarity=0.038  Sum_probs=94.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----CC------------------CCCH---HHHHHH
Q ss_conf             999999957578799999999998741001244666556632-----75------------------2100---135555
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAIL-----YP------------------EDQE---VLAAYG  111 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~-----~p------------------~~~~---~~~~~~  111 (271)
                      .+-..+..+|-+.+.++.+++++.++|+...|.+.+++++-.     +|                  ++..   ++....
T Consensus        28 ~l~~lL~~~PYHvdtLLq~s~v~~~qgd~~~a~dlieRALf~~e~~~h~~F~~~~~~g~~rL~~~~~eNR~fflal~r~i  107 (343)
T pfam04910        28 ALISLLQKYPYHVDTLLQVSEIFRRQGDHSLANDLIERALFAFERALHPSFSPSLTSGNCRLPYRRPENRQFFLALFRYI  107 (343)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHH
T ss_conf             99999985998378999999999984778889999999999977662254542567760227678341299999999999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHCH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf             3210000011258876422110000-23356699999-99742111110000000000000--00124577765433223
Q gi|254780592|r  112 KSLANAGYLDEGLDAINRAQRPDIP-DWQLISAKGSV-LAQMGKHSEALIEYERALELSPN--ESSIVSNIAMSYLLMGD  187 (271)
Q Consensus       112 ~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~lg~~-~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~  187 (271)
                      ..+.+.|-+-.|.++.+-.+..+|. |+-.....-.. ..+.++++--+...+.......-  -+..-...+.++...++
T Consensus       108 ~~L~~Rgc~rTAlE~~KLLLsLdp~~DP~g~ll~ID~~ALrs~ey~~li~f~~~~~~~~~~~~lPn~afS~aLA~~~l~~  187 (343)
T pfam04910       108 QSLGRRGCWRTALEWCKLLLSLDPEEDPLGALLLIDYYALRAKEYEWLIDFSESPLASRNLSLLPNFAYSVALALFLLEK  187 (343)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf             99886654899999999998449888813679999999996353779999997353034065584878999999999748


Q ss_pred             ----HHHHHHHHHHHHHCCCCC
Q ss_conf             ----554359999999538985
Q gi|254780592|r  188 ----LKTAEEKLRFASQMIGAD  205 (271)
Q Consensus       188 ----~~~A~~~~~~al~~~p~~  205 (271)
                          .+.|...+++|+..-|.-
T Consensus       188 ~~~~~~~A~~~L~~Ai~~fP~v  209 (343)
T pfam04910       188 DDGLSESARALLLRAILRFPWV  209 (343)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6666078999999999984999


No 199
>KOG2396 consensus
Probab=96.87  E-value=0.0099  Score=34.39  Aligned_cols=62  Identities=16%  Similarity=0.104  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             9999999999999575787999999999987410-0124466655663275210013555532
Q gi|254780592|r   52 LLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGR-TAQALAVMRQVAILYPEDQEVLAAYGKS  113 (271)
Q Consensus        52 ~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~  113 (271)
                      +.+-...|.+++..+|++++.|+.-|.-....+. .+.|..++.+++..+|+.+..|..+-+.
T Consensus       121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396         121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             468999999999858998306886655687503235899999997764189976899999999


No 200
>pfam05843 Suf Suppressor of forked protein (Suf). This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur.
Probab=96.80  E-value=0.032  Score=31.30  Aligned_cols=81  Identities=11%  Similarity=0.021  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9999999999999575787999999999987-410012446665566327521001355553210000011258876422
Q gi|254780592|r   52 LLEVTSTIGLQYQSHTKNKMIGIVYADVLRR-VGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRA  130 (271)
Q Consensus        52 ~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  130 (271)
                      ..+|...|.+|-+...-.-+++..-|.+-+. .++..-|..+|+.+++..++++.....+-+.+...++...+...|+++
T Consensus        17 i~~aR~vF~~aRk~~~~t~~vyva~Al~E~~~~~d~~~a~kIFelGlK~f~~~~~y~~~Yld~Li~~nd~~n~R~lFE~~   96 (275)
T pfam05843        17 IKAARKVFKKARKKGRITYHVYVASALMEYYCSKDPKTAFKIFELGLKLFPEDGEFVLKYLDFLISLNDDTNARVLFETV   96 (275)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             28899999998607898559999999999987378079999999998765897899999999998717750189999999


Q ss_pred             HH
Q ss_conf             11
Q gi|254780592|r  131 QR  132 (271)
Q Consensus       131 ~~  132 (271)
                      +.
T Consensus        97 ~~   98 (275)
T pfam05843        97 VT   98 (275)
T ss_pred             HH
T ss_conf             85


No 201
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.78  E-value=0.033  Score=31.22  Aligned_cols=154  Identities=20%  Similarity=0.132  Sum_probs=67.6

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q ss_conf             9842019999999999999575787-----999999999987410012446665566327521------00135555321
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNK-----MIGIVYADVLRRVGRTAQALAVMRQVAILYPED------QEVLAAYGKSL  114 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~-----~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~  114 (271)
                      .++.++++.|+...+.+++.-|.+.     .+....|.+..-.|++++|..+.+++.+.....      ..+....+.++
T Consensus       468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il  547 (894)
T COG2909         468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL  547 (894)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             98458778999999999986612254000256540568888734399999988879999998044889999999999999


Q ss_pred             HHHCC--HHHHHHHHHHH----HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHH---HHHHHHHHH
Q ss_conf             00000--11258876422----11000023356699999997421111100000000000----0000---124577765
Q gi|254780592|r  115 ANAGY--LDEGLDAINRA----QRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELS----PNES---SIVSNIAMS  181 (271)
Q Consensus       115 ~~~g~--~~~A~~~~~~a----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~---~~~~~~~~~  181 (271)
                      ...|+  +.+....+...    ....|........++.++...-+.+.+......+++..    |...   ....+++.+
T Consensus       548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l  627 (894)
T COG2909         548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL  627 (894)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             98307889988888777998876542532157889999999999886666776433004220363236799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             433223554359999999
Q gi|254780592|r  182 YLLMGDLKTAEEKLRFAS  199 (271)
Q Consensus       182 ~~~~g~~~~A~~~~~~al  199 (271)
                      +...|++++|...+....
T Consensus       628 ~~~~Gdl~~A~~~l~~~~  645 (894)
T COG2909         628 EFLRGDLDKALAQLDELE  645 (894)
T ss_pred             HHHCCCHHHHHHHHHHHH
T ss_conf             875388888998999999


No 202
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.78  E-value=0.033  Score=31.19  Aligned_cols=195  Identities=18%  Similarity=0.126  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--C-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC-----
Q ss_conf             179999998420199999999999995757--8-------79999999999874100124466655663275210-----
Q gi|254780592|r   39 PDPESLENMNHEQLLEVTSTIGLQYQSHTK--N-------KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ-----  104 (271)
Q Consensus        39 ~~~~~~~~~~~~~~~~A~~~~~~al~~~P~--~-------~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~-----  104 (271)
                      ...++........+.+|...+.++...-|.  .       .+..--.|.+....|+++.|..+.+.++..-|.+.     
T Consensus       418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~  497 (894)
T COG2909         418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI  497 (894)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             99999999973691789999999998707776631244889999999999984587789999999999866122540002


Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHCCC----CCCHHH
Q ss_conf             013555532100000112588764221100----002335669--999999742--11111000000000----000000
Q gi|254780592|r  105 EVLAAYGKSLANAGYLDEGLDAINRAQRPD----IPDWQLISA--KGSVLAQMG--KHSEALIEYERALE----LSPNES  172 (271)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~--lg~~~~~~~--~~~~A~~~~~~~~~----~~p~~~  172 (271)
                      ..+...+.+..-.|++++|......+.+..    ......|..  .+.++..+|  .++.....|.....    ..|...
T Consensus       498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~  577 (894)
T COG2909         498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE  577 (894)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             56540568888734399999988879999998044889999999999999983078899888887779988765425321


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CC--CH-HHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             124577765433223554359999999538----98--54-788899999998699899999999862
Q gi|254780592|r  173 SIVSNIAMSYLLMGDLKTAEEKLRFASQMI----GA--DS-RIRQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       173 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~--~~-~~~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      ......+.++...-+++.+.....+.++..    |.  .+ -+...||.++...|+.++|...+....
T Consensus       578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~  645 (894)
T COG2909         578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE  645 (894)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             57889999999999886666776433004220363236799999999999875388888998999999


No 203
>pfam05843 Suf Suppressor of forked protein (Suf). This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur.
Probab=96.75  E-value=0.031  Score=31.33  Aligned_cols=115  Identities=14%  Similarity=0.064  Sum_probs=78.1

Q ss_pred             HHHHHHCCCCCCCCHHHH---HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf             998540368543311799---99998420199999999999995757879999999999874100124466655663275
Q gi|254780592|r   25 LLFSSCHLNPRISIPDPE---SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYP  101 (271)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p  101 (271)
                      .+|.-|-..+...-.-..   .+++...+|-.=|...|+.-++.-|++++..+.+.+-+...++...+..+|++++..-+
T Consensus        22 ~vF~~aRk~~~~t~~vyva~Al~E~~~~~d~~~a~kIFelGlK~f~~~~~y~~~Yld~Li~~nd~~n~R~lFE~~~~~l~  101 (275)
T pfam05843        22 KVFKKARKKGRITYHVYVASALMEYYCSKDPKTAFKIFELGLKLFPEDGEFVLKYLDFLISLNDDTNARVLFETVVTKLT  101 (275)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             99999860789855999999999998737807999999999876589789999999999871775018999999985048


Q ss_pred             CCC---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHH
Q ss_conf             210---01355553210000011258876422110000233
Q gi|254780592|r  102 EDQ---EVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQ  139 (271)
Q Consensus       102 ~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  139 (271)
                      ...   ..|..+......-|+.......-++-.+.-|.+..
T Consensus       102 ~~~e~~~i~~~~~~fEs~~gdL~~i~klE~R~~e~fPed~~  142 (275)
T pfam05843       102 PEPEAKPLWKKFIKYESKYGDLSSILKLEKRMFELFPEDPP  142 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             73777999999999988508699999999999986789727


No 204
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.68  E-value=0.039  Score=30.75  Aligned_cols=166  Identities=17%  Similarity=0.053  Sum_probs=114.0

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----H
Q ss_conf             98420199999999999995757879999999999874----100124466655663275210013555532100----0
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRV----GRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN----A  117 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~  117 (271)
                      ....+++..|...+.++-..  .++.....++..+..-    .+..+|...++.+.  ....+.+...+|..+..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             HCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHCCCCCC
T ss_conf             00221489889999988643--5476789999998635552013899999999987--3697999999999985589974


Q ss_pred             CCHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----H
Q ss_conf             00112588764221100002-335669999999742-------11111000000000000000124577765433----2
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDIPD-WQLISAKGSVLAQMG-------KHSEALIEYERALELSPNESSIVSNIAMSYLL----M  185 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p~~-~~~~~~lg~~~~~~~-------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~  185 (271)
                      .+..+|..++.++....... ......+|.++..-.       +...|...+.++-...  +..+...+|..|..    .
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~y~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHCCCCCC
T ss_conf             58999999999999847930599999999986188632121514899999999999836--7999999999997588876


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             23554359999999538985478889999999869
Q gi|254780592|r  186 GDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQG  220 (271)
Q Consensus       186 g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g  220 (271)
                      .++++|..+|+++.+...  ....+.++ ++...|
T Consensus       205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHHCC
T ss_conf             689999999999997698--99999999-998668


No 205
>KOG1258 consensus
Probab=96.67  E-value=0.039  Score=30.72  Aligned_cols=120  Identities=13%  Similarity=-0.046  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf             3555532100000112588764221100002335669999999742111110000000000-000001245777654332
Q gi|254780592|r  107 LAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALEL-SPNESSIVSNIAMSYLLM  185 (271)
Q Consensus       107 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~  185 (271)
                      |..+-......|+++...-.+++.+..-....+.|...+......|+.+.+...+..+.+. .+..+.++...+..-...
T Consensus       300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~  379 (577)
T KOG1258         300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN  379 (577)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99876455540517889999999873775238899999999997176267779997432110778707999999999962


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             23554359999999538985478889999999869989999
Q gi|254780592|r  186 GDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAY  226 (271)
Q Consensus       186 g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~  226 (271)
                      |+++.|...+++..+..|+...+-..-+.+....|+.+.+.
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258         380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             46999999999988657763556778876999834245566


No 206
>KOG3616 consensus
Probab=96.65  E-value=0.041  Score=30.61  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5777654332235543599999
Q gi|254780592|r  176 SNIAMSYLLMGDLKTAEEKLRF  197 (271)
Q Consensus       176 ~~~~~~~~~~g~~~~A~~~~~~  197 (271)
                      ...+..|...|+++.|.+.|.+
T Consensus       769 ~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616         769 GEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
T ss_conf             6788875253037899999873


No 207
>KOG0985 consensus
Probab=96.58  E-value=0.046  Score=30.33  Aligned_cols=167  Identities=15%  Similarity=0.068  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             78799999999998741001244666556632752100135555321000001125887642211000023356699999
Q gi|254780592|r   68 KNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV  147 (271)
Q Consensus        68 ~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~  147 (271)
                      +.|..|..+|.+-.+.|...+|++-|-++     +++..+....+...+.|.|++-..++..+..... .+..-..+-..
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985        1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-CCCCHHHHHHH
T ss_conf             88579999999988458407899978615-----8817789999998753769999999999997404-76412899999


Q ss_pred             HHHHHHHHHHHHHH----------------HH----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
Q ss_conf             99742111110000----------------00----0000000001245777654332235543599999995389----
Q gi|254780592|r  148 LAQMGKHSEALIEY----------------ER----ALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG----  203 (271)
Q Consensus       148 ~~~~~~~~~A~~~~----------------~~----~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----  203 (271)
                      |.+.++..+-.+..                +.    +.++--++.+-+..++..++..|+|..|...-++|-+...    
T Consensus      1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985        1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred             HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             99752077899986498702288875887540235999999997646999999999988777787776640330179999


Q ss_pred             -----C----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf             -----8----------------547888999999986998999999998629172866
Q gi|254780592|r  204 -----A----------------DSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR  240 (271)
Q Consensus       204 -----~----------------~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~  240 (271)
                           +                +.+-...|...|...|-++|-+.+++.+|..+.++-
T Consensus      1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985        1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred             HHHHHCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHH
T ss_conf             9997062454498763744898677689999999825709999999986525047777


No 208
>pfam08424 DUF1740 Protein of unknown function (DUF1740). This is a family of eukaryotic proteins of unknown function.
Probab=96.53  E-value=0.049  Score=30.13  Aligned_cols=138  Identities=9%  Similarity=-0.039  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HC--CHHHHHHHHH
Q ss_conf             999999999999-5757879999999999874100124466655663275210013555532100-00--0112588764
Q gi|254780592|r   53 LEVTSTIGLQYQ-SHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN-AG--YLDEGLDAIN  128 (271)
Q Consensus        53 ~~A~~~~~~al~-~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g--~~~~A~~~~~  128 (271)
                      +.-+..|++|++ .+|++...++.+-......-+.++-..-+++++..+|.+...|..+-...+. ..  .+++....|.
T Consensus        50 E~KlsilEkAL~~~np~~~~Lll~~l~~~~~~w~~~~l~~~We~~l~~~p~~~~LW~~yL~~~q~~~~~f~~~~v~~~y~  129 (231)
T pfam08424        50 EIKLSILEKALKEHNPDSERLLLGLLEEGEKVWDTDELLSRWEKVLKQNPGSPSLWRKYLDFRQGDFANFSYSKVRKTYE  129 (231)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             99999999999985899789999999999985787999999999999889975999999999860654670888999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             22110000233566999999974211-11100000000000000012457776543322355435999999953898547
Q gi|254780592|r  129 RAQRPDIPDWQLISAKGSVLAQMGKH-SEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR  207 (271)
Q Consensus       129 ~a~~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  207 (271)
                      +.+.                 .+... ......-............+..++.....+.|..+.|...++-.++.+--.+.
T Consensus       130 ~cl~-----------------~l~~~~~~~~~~~~~~~~~e~~~l~lflr~~~flrqaG~~E~Aval~QA~lE~n~f~P~  192 (231)
T pfam08424       130 KCLR-----------------ALKAAKLKEITSVPAVPELEEVMLYLFLRLCRFLRQAGYTELAVALWQALLEFNFFRPD  192 (231)
T ss_pred             HHHH-----------------HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             9999-----------------98750024432455530278999999999999999859689999999999988268836


No 209
>pfam02259 FAT FAT domain. The FAT domain is named after FRAP, ATM and TRRAP.
Probab=96.51  E-value=0.05  Score=30.07  Aligned_cols=109  Identities=15%  Similarity=0.019  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------
Q ss_conf             002335669999999742111110000000000000--0012457776543322355435999999953898--------
Q gi|254780592|r  135 IPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN--ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA--------  204 (271)
Q Consensus       135 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------  204 (271)
                      ......|...+.+..+.|+++.|...+.++....+.  .+.+....+..+..+|+..+|+..++..+.....        
T Consensus       147 ~e~~~~wlk~a~laRK~g~~~~A~~~l~~l~~~~~~~~~p~v~~e~aKllW~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  226 (351)
T pfam02259       147 HELAEMWLKFANLARKSGRFSLAEKALLKLLTYDTREDLPNVVIAYAKYLWAKGEQQEAFQKLREFTSCYLSKPVGSSSD  226 (351)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             55899999999999888899899999999862588789954699999999974889999999999999875212122443


Q ss_pred             ------------------------CHHHHHHHHHHHHH------CCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             ------------------------54788899999998------6998999999998629172866599
Q gi|254780592|r  205 ------------------------DSRIRQNLALVVGL------QGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       205 ------------------------~~~~~~~La~~~~~------~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                                              ..+++..+|.-...      .+..+++...|..+...++......
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~Ar~~l~lg~W~~~~~~~~~~~~~~~il~~y~~A~~~~~~w~Kaw  295 (351)
T pfam02259       227 SELLLGLTYEVISSTNLEYFEAKLLARCFLKLGEWLDKLQMNWGQGKKDEILKAYRTATQFDDQWYKAW  295 (351)
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             023210122345560144453799999999998999985654364579999999999998786648999


No 210
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.48  E-value=0.053  Score=29.95  Aligned_cols=148  Identities=20%  Similarity=0.101  Sum_probs=59.4

Q ss_pred             HHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HH
Q ss_conf             874100124466655663275210013555532100----0001125887642211000023356699999997----42
Q gi|254780592|r   81 RRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN----AGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQ----MG  152 (271)
Q Consensus        81 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~----~~  152 (271)
                      ...+.+..+...+.++....  +......++..+..    ..+...|..+++.+  .+...+.....+|.++..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             02214898899999886435--47678999999863555201389999999998--736979999999999855899745


Q ss_pred             HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CC
Q ss_conf             1111100000000000000-012457776543322-------35543599999995389854788899999998----69
Q gi|254780592|r  153 KHSEALIEYERALELSPNE-SSIVSNIAMSYLLMG-------DLKTAEEKLRFASQMIGADSRIRQNLALVVGL----QG  220 (271)
Q Consensus       153 ~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~----~g  220 (271)
                      +..+|...+.++....... ......++..|..-.       +...|...|.++-...  +..+..++|.+|..    ..
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~y~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~  205 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR  205 (292)
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHCCCCCCC
T ss_conf             8999999999999847930599999999986188632121514899999999999836--79999999999975888766


Q ss_pred             CHHHHHHHHHHHCC
Q ss_conf             98999999998629
Q gi|254780592|r  221 RMKEAYSIASQELS  234 (271)
Q Consensus       221 ~~~eA~~~~~~~L~  234 (271)
                      ++.+|...|+++-.
T Consensus       206 d~~~A~~wy~~Aa~  219 (292)
T COG0790         206 DLKKAFRWYKKAAE  219 (292)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             89999999999997


No 211
>KOG1839 consensus
Probab=96.47  E-value=0.048  Score=30.17  Aligned_cols=155  Identities=16%  Similarity=0.053  Sum_probs=88.7

Q ss_pred             HHHHHHHHHCCHHHHH------HHHHH-HHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH--------HHCHHHHH
Q ss_conf             9999987410012446------66556-632752100135555321000001125887642211--------00002335
Q gi|254780592|r   76 YADVLRRVGRTAQALA------VMRQV-AILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR--------PDIPDWQL  140 (271)
Q Consensus        76 ~a~~l~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~~  140 (271)
                      .+..-...|.+.++.+      ++... -.++|+....+..++.++..+|+.++|..+-.++.-        ..|+....
T Consensus       938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839         938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECHHCCCCCHHHHHH
T ss_conf             65666412201455420024567777764005568899999998876533358899840121554001116798788877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----C---
Q ss_conf             66999999974211111000000000--------0000001245777654332235543599999995389-----8---
Q gi|254780592|r  141 ISAKGSVLAQMGKHSEALIEYERALE--------LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG-----A---  204 (271)
Q Consensus       141 ~~~lg~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~---  204 (271)
                      +.+++......+....|...+..+..        ..|.......+++.++...++++.|+.+++.|+..+.     .   
T Consensus      1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839        1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             66789998741575511466888898630345788996223264799998558888778999999998776624852103


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             54788899999998699899999999
Q gi|254780592|r  205 DSRIRQNLALVVGLQGRMKEAYSIAS  230 (271)
Q Consensus       205 ~~~~~~~La~~~~~~g~~~eA~~~~~  230 (271)
                      ....+..++......|.+..|....+
T Consensus      1098 ~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839        1098 TALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45678899998752688999998876


No 212
>KOG1839 consensus
Probab=96.44  E-value=0.047  Score=30.22  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=47.4

Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf             00002335669999999742111110000000000--------0000012457776543322355435999999953---
Q gi|254780592|r  133 PDIPDWQLISAKGSVLAQMGKHSEALIEYERALEL--------SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM---  201 (271)
Q Consensus       133 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---  201 (271)
                      ..|.....+..++.++...++.++|+..-.++.-.        .|+....+.+++......++...|...+.++...   
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839         968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf             05568899999998876533358899840121554001116798788877667899987415755114668888986303


Q ss_pred             -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             -----898547888999999986998999999998629
Q gi|254780592|r  202 -----IGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       202 -----~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                           .|.-.-+..++.+++...++++-|..+++.+++
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839        1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45788996223264799998558888778999999998


No 213
>pfam00515 TPR_1 Tetratricopeptide repeat.
Probab=96.30  E-value=0.0034  Score=37.27  Aligned_cols=31  Identities=13%  Similarity=0.194  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             9999999998741001244666556632752
Q gi|254780592|r   72 IGIVYADVLRRVGRTAQALAVMRQVAILYPE  102 (271)
Q Consensus        72 ~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~  102 (271)
                      ++.++|.+|..+|++++|+..|+++++++|+
T Consensus         3 ~~~~lG~~y~~~~~~~~A~~~~~~Al~l~p~   33 (34)
T pfam00515         3 ALYNLGNAYFKLGKYDEAIEYYEKALELNPN   33 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             9999899999917899999999998843989


No 214
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK; InterPro: IPR013394    This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia..
Probab=96.21  E-value=0.06  Score=29.61  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             211111000000000000000124577765433223554359999999538985---47888999999986998999999
Q gi|254780592|r  152 GKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLALVVGLQGRMKEAYSI  228 (271)
Q Consensus       152 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~~~~~~g~~~eA~~~  228 (271)
                      +++.++...+....-++|+-..+-..=|.+++..|+|++|.+.|.+.....|..   +...-.||.++..+|+  +.+..
T Consensus        30 ~~~~d~~l~L~AlRvLrP~l~~~d~~dG~L~i~~G~y~dAaR~L~E~~~~~~~~svm~yg~ALlAlcL~~~~D--~~W~~  107 (190)
T TIGR02561        30 ADPYDIELLLDALRVLRPNLKELDMFDGWLLIARGNYDDAARILRELLASAGAASVMPYGKALLALCLSAKGD--DEWHL  107 (190)
T ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC--HHHHH
T ss_conf             7888899999998502765068899999998615875899999998724899720437899999998743288--88899


Q ss_pred             -HHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             -998629172866599999999832129
Q gi|254780592|r  229 -ASQELSPEEATRNIKYIKSILSQRDPW  255 (271)
Q Consensus       229 -~~~~L~~~~~~~~~~~l~~~l~~~~~~  255 (271)
                       ...+|..++....+.+.+++..+.+--
T Consensus       108 ~A~e~L~~~a~~dav~LVkAL~~~~D~~  135 (190)
T TIGR02561       108 HADEVLEEDADADAVALVKALEAREDVL  135 (190)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999874487850679999886532489


No 215
>KOG2396 consensus
Probab=96.14  E-value=0.03  Score=31.40  Aligned_cols=93  Identities=6%  Similarity=-0.004  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
Q ss_conf             999999999995757879999999999874100124466655663275210013555532100000-1125887642211
Q gi|254780592|r   54 EVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGY-LDEGLDAINRAQR  132 (271)
Q Consensus        54 ~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~  132 (271)
                      .-...|+.+..+-|.|+..|.++..-....+.+.+--.+|.+++..+|+++..|..-+.-....+. .+.|...+.+++.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396          89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999999997567777899999999998422468999999999858998306886655687503235899999997764


Q ss_pred             HHCHHHHHHHHHHH
Q ss_conf             00002335669999
Q gi|254780592|r  133 PDIPDWQLISAKGS  146 (271)
Q Consensus       133 ~~p~~~~~~~~lg~  146 (271)
                      .+|..+..|...-.
T Consensus       169 ~npdsp~Lw~eyfr  182 (568)
T KOG2396         169 FNPDSPKLWKEYFR  182 (568)
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             18997689999999


No 216
>pfam00515 TPR_1 Tetratricopeptide repeat.
Probab=96.12  E-value=0.0049  Score=36.25  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2457776543322355435999999953898
Q gi|254780592|r  174 IVSNIAMSYLLMGDLKTAEEKLRFASQMIGA  204 (271)
Q Consensus       174 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  204 (271)
                      ++.++|.+|..+|++++|+.+|++|++++|+
T Consensus         3 ~~~~lG~~y~~~~~~~~A~~~~~~Al~l~p~   33 (34)
T pfam00515         3 ALYNLGNAYFKLGKYDEAIEYYEKALELNPN   33 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             9999899999917899999999998843989


No 217
>pfam04053 Coatomer_WDAD Coatomer WD associated region. This region is composed of WD40 repeats.
Probab=96.10  E-value=0.084  Score=28.70  Aligned_cols=158  Identities=17%  Similarity=0.157  Sum_probs=101.0

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             99984201999999999999957578799999999998741001244666556632752100135555321000001125
Q gi|254780592|r   44 LENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEG  123 (271)
Q Consensus        44 ~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  123 (271)
                      ...+-.+++++|...+...--.-|.  +-....+.-+...|-++.|+.+..     +|   ...+.   ...+.|+.+.|
T Consensus       263 k~av~r~d~~~~~~~~~~~~l~~p~--~~~~~i~~fLe~~G~~e~AL~~~~-----D~---~~rFe---LAl~lG~L~~A  329 (435)
T pfam04053       263 KTALLRKDYEEVLRIIANSNLLPPK--DQGQKIIRFLEKKGYPELALQFVT-----DP---DTRFD---LALELGNLDVA  329 (435)
T ss_pred             HHHHHCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHCCCHHHHHHHCC-----CH---HHHHH---HHHHCCCHHHH
T ss_conf             9999757788999876421336873--466799999997797888876608-----90---47616---76861999999


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             88764221100002335669999999742111110000000000000001245777654332235543599999995389
Q gi|254780592|r  124 LDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG  203 (271)
Q Consensus       124 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  203 (271)
                      .+...+.     ++...|..+|.....+|+++.|..+|.++-..        ..+..+|.-.|+.+.=....+.|.....
T Consensus       330 ~~~A~~~-----~~~~~Wk~Lg~~AL~~g~~~lAe~~~~k~~d~--------~~LllLy~~tG~~~~L~kl~~~a~~~g~  396 (435)
T pfam04053       330 LEIAKEL-----DDEHKWKRLGDAALSQGNIKLAEEAYQKAKDF--------DKLLLLYLSTGNKEKLKKLAKIAEERGD  396 (435)
T ss_pred             HHHHHHH-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH--------HHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             9999873-----67999999999999749958999999974253--------4559999984999999999999998476


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             85478889999999869989999999986
Q gi|254780592|r  204 ADSRIRQNLALVVGLQGRMKEAYSIASQE  232 (271)
Q Consensus       204 ~~~~~~~~La~~~~~~g~~~eA~~~~~~~  232 (271)
                      .+....     ++...|+.++-..++.+.
T Consensus       397 ~n~aF~-----~~~~lgd~~~cv~lL~~t  420 (435)
T pfam04053       397 YNSAFQ-----NALYLGDVEKCVDILIKT  420 (435)
T ss_pred             CCHHHH-----HHHHHCCHHHHHHHHHHC
T ss_conf             229999-----998808999999999985


No 218
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.04  E-value=0.0072  Score=35.23  Aligned_cols=61  Identities=13%  Similarity=0.025  Sum_probs=56.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf             9842019999999999999575787999999999987410012446665566327521001
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEV  106 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~  106 (271)
                      ....+|.+.|.+.|.++++.-|+....|+++|......|+.+.|..-++++++++|++...
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             1036784899999987750470444345540236663041899999999887079621222


No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.00  E-value=0.094  Score=28.41  Aligned_cols=130  Identities=8%  Similarity=0.089  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             79999999999874100124466655663275210013555532100000112588764221100002335669999999
Q gi|254780592|r   70 KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLA  149 (271)
Q Consensus        70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~  149 (271)
                      +.-......++...|.+.+-+.+++.++..++.++.....++.++...+. ...+..+.+-    .+... ....|..+.
T Consensus         7 ~~~~~~vi~~~e~~~~~~~L~~~L~~~~~~~~~~~~l~~~Li~~yak~~~-~~~le~~~~~----~~~yd-~~~i~~~C~   80 (140)
T smart00299        7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDNK----SNHYD-IEKVGKLCE   80 (140)
T ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHC----CCCCC-HHHHHHHHH
T ss_conf             54799999999987999999999999984576670799999999998293-8689998703----67588-999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             7421111100000000000000012457776543-32235543599999995389854788899999998
Q gi|254780592|r  150 QMGKHSEALIEYERALELSPNESSIVSNIAMSYL-LMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGL  218 (271)
Q Consensus       150 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~  218 (271)
                      ..+-+++|...+.+.-.    ...    ....++ ..++++.|+.++.++     ++++.|..++.....
T Consensus        81 ~~~l~~~a~~ly~~~~~----~~~----ai~~~i~~~~~~~~aie~~~~~-----~~~e~w~~l~~~~ld  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN----FKD----AIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLD  137 (140)
T ss_pred             HHCCHHHHHHHHHHCCC----HHH----HHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHC
T ss_conf             81339999999987064----999----9999999867499999999984-----999999999999855


No 220
>KOG2300 consensus
Probab=95.98  E-value=0.096  Score=28.34  Aligned_cols=188  Identities=13%  Similarity=0.053  Sum_probs=123.5

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCC---CH-----------HHHHHHHHHHHHHHCCHHHHHHHHHHHH---CCCC-------
Q ss_conf             8420199999999999995757---87-----------9999999999874100124466655663---2752-------
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTK---NK-----------MIGIVYADVLRRVGRTAQALAVMRQVAI---LYPE-------  102 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~---~~-----------~~~~~~a~~l~~~g~~~~A~~~~~~al~---~~p~-------  102 (271)
                      +..|.+.+|..+-++++..-.+   -+           ..+.....+-.-.|++.+|+.-+....+   ..|.       
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~  365 (629)
T KOG2300         286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH  365 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             14689999999999999987640124321489999999999999999987078899999999999998718945777773


Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-------H
Q ss_conf             1001355553210000011258876422110000---23356699999997421111100000000000000-------0
Q gi|254780592|r  103 DQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIP---DWQLISAKGSVLAQMGKHSEALIEYERALELSPNE-------S  172 (271)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-------~  172 (271)
                      .......+|......+-++.|...|..++.....   .+....+++..|.++++.+.--+..+..-..+..+       .
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a  445 (629)
T KOG2300         366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEA  445 (629)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             78999997167631024778999999999862077899999986999999712087899999862898777624999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             124577765433223554359999999538985------47888999999986998999999998629
Q gi|254780592|r  173 SIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD------SRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       173 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      .+++..|...+.++++.+|...+++.++.....      .-....|+.+....|+..|+....+-++.
T Consensus       446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamq  513 (629)
T KOG2300         446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQ  513 (629)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH
T ss_conf             79999999999855289999999998754040257788878999999999981452887725545888


No 221
>KOG0985 consensus
Probab=95.91  E-value=0.1  Score=28.16  Aligned_cols=175  Identities=12%  Similarity=0.022  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             11799999984201999999999999957578799999999998741001244666556632752100135555321000
Q gi|254780592|r   38 IPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANA  117 (271)
Q Consensus        38 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  117 (271)
                      ...+.+...+..+-..+|++.|-++     +||..+.....+..+.|++++-+.++.-+.+...+ +.+-..+-.+|...
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt 1179 (1666)
T KOG0985        1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKT 1179 (1666)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf             9999999988458407899978615-----88177899999987537699999999999974047-64128999999975


Q ss_pred             CCHHHHHHHHH--------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-------
Q ss_conf             00112588764--------------------221100002335669999999742111110000000000000-------
Q gi|254780592|r  118 GYLDEGLDAIN--------------------RAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN-------  170 (271)
Q Consensus       118 g~~~~A~~~~~--------------------~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-------  170 (271)
                      ++..+-.+.+.                    .+-+.-......|..++..+..+|++..|.+..+++-....=       
T Consensus      1180 ~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaC 1259 (1666)
T KOG0985        1180 NRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFAC 1259 (1666)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             20778999864987022888758875402359999999976469999999999887777877766403301799999997


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             ------------------001245777654332235543599999995389854788899999998
Q gi|254780592|r  171 ------------------ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGL  218 (271)
Q Consensus       171 ------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~  218 (271)
                                        ..+-+..+...|...|-+++-+..++.++.+...+-..+..||..|..
T Consensus      1260 vd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985        1260 VDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             062454498763744898677689999999825709999999986525047777889999999985


No 222
>KOG1310 consensus
Probab=95.85  E-value=0.022  Score=32.23  Aligned_cols=93  Identities=15%  Similarity=-0.035  Sum_probs=68.5

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             984201999999999999957578799999999998741---00124466655663275210013555532100000112
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVG---RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDE  122 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  122 (271)
                      -+..+....|+..|.++++..|.....+.++|.++++.+   +.--|+.-.-.++.++|....++..+++++.+++++.+
T Consensus       384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310         384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10368887789998877664550267887689999864114307899876776256783888889999999999766877


Q ss_pred             HHHHHHHHHHHHCHHH
Q ss_conf             5887642211000023
Q gi|254780592|r  123 GLDAINRAQRPDIPDW  138 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~  138 (271)
                      |++...-+....|.+.
T Consensus       464 al~~~~alq~~~Ptd~  479 (758)
T KOG1310         464 ALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHCCCHHH
T ss_conf             5312898751693566


No 223
>KOG1586 consensus
Probab=95.82  E-value=0.11  Score=27.92  Aligned_cols=186  Identities=11%  Similarity=0.040  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             0199999999999995757879999999999874100124466655663275------2100135555321000001125
Q gi|254780592|r   50 EQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYP------EDQEVLAAYGKSLANAGYLDEG  123 (271)
Q Consensus        50 ~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A  123 (271)
                      +.+++|.+.+.++-              ..|....++..|=..|-++.+.+-      +-...+..-+.+|.. ++.++|
T Consensus        28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eA   92 (288)
T KOG1586          28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEA   92 (288)
T ss_pred             CCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCHHHH
T ss_conf             50689999999987--------------899988868887899999999988608811378899999887621-584889


Q ss_pred             HHHHHHHHHHHCHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf             88764221100002------33566999999974-211111000000000000000------124577765433223554
Q gi|254780592|r  124 LDAINRAQRPDIPD------WQLISAKGSVLAQM-GKHSEALIEYERALELSPNES------SIVSNIAMSYLLMGDLKT  190 (271)
Q Consensus       124 ~~~~~~a~~~~p~~------~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~g~~~~  190 (271)
                      ...++++++.-..-      +..+..+|.+|..- .++++|+..|+++-+-.....      .-+.-.+..--..++|.+
T Consensus        93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~  172 (288)
T KOG1586          93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK  172 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999852277787751113999986227779999999999999970015552688999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC---HHHHHHHHHHH
Q ss_conf             3599999995389854-------788899999998699899999999862917286---65999999998
Q gi|254780592|r  191 AEEKLRFASQMIGADS-------RIRQNLALVVGLQGRMKEAYSIASQELSPEEAT---RNIKYIKSILS  250 (271)
Q Consensus       191 A~~~~~~al~~~p~~~-------~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~---~~~~~l~~~l~  250 (271)
                      |+..|++....+-+++       +..+.-|++..-.++.-.+...+++-...+|+-   +.-.+++.++.
T Consensus       173 Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~  242 (288)
T KOG1586         173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD  242 (288)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             9999999999860364877678889999998867302077899999988753986464088799999999


No 224
>KOG1310 consensus
Probab=95.78  E-value=0.023  Score=32.18  Aligned_cols=85  Identities=14%  Similarity=-0.018  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0012446665566327521001355553210000---0112588764221100002335669999999742111110000
Q gi|254780592|r   85 RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAG---YLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEY  161 (271)
Q Consensus        85 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  161 (271)
                      +...++..+-++++..|.....+..++.+++..+   +--.|+...-.++.++|....+++.++.++..++++.+|++..
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~  468 (758)
T KOG1310         389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH  468 (758)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88778999887766455026788768999986411430789987677625678388888999999999976687753128


Q ss_pred             HHCCCCCC
Q ss_conf             00000000
Q gi|254780592|r  162 ERALELSP  169 (271)
Q Consensus       162 ~~~~~~~p  169 (271)
                      .......|
T Consensus       469 ~alq~~~P  476 (758)
T KOG1310         469 WALQMSFP  476 (758)
T ss_pred             HHHHHCCC
T ss_conf             98751693


No 225
>pfam04348 LppC LppC putative lipoprotein. This family includes several bacterial outer membrane antigens, whose molecular function is unknown.
Probab=95.78  E-value=0.12  Score=27.82  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             HHHHHHHHCCHHHHHHHHHHH--HCCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHH--HHHHC-HHHHHHHHHHHHHHH
Q ss_conf             999987410012446665566--327521-001355553210000011258876422--11000-023356699999997
Q gi|254780592|r   77 ADVLRRVGRTAQALAVMRQVA--ILYPED-QEVLAAYGKSLANAGYLDEGLDAINRA--QRPDI-PDWQLISAKGSVLAQ  150 (271)
Q Consensus        77 a~~l~~~g~~~~A~~~~~~al--~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a--~~~~p-~~~~~~~~lg~~~~~  150 (271)
                      +.++...|++.+|..++.++.  .++|.. .+.....+.+....|+++.|...+...  ....+ ...+.+..++.++..
T Consensus        31 a~a~i~eg~~~qA~~ll~~l~~~~L~~~q~~e~~Ll~A~l~~~~~~~~~Al~~L~~~~~~~L~~~q~~r~~~l~A~~~~~  110 (535)
T pfam04348        31 ARVLIEENKIAQAQALLRELSVQQLTDEQKLDKSLLEAELAAAKRQNEVALQQLSHQHLSGLSPSQQSRYYEGRARIAEA  110 (535)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999779999999999974041199999999999999999975999999998557981107999999999999999997


Q ss_pred             HHHHHHHHHH
Q ss_conf             4211111000
Q gi|254780592|r  151 MGKHSEALIE  160 (271)
Q Consensus       151 ~~~~~~A~~~  160 (271)
                      .|++-+|...
T Consensus       111 ~~~~l~a~r~  120 (535)
T pfam04348       111 RGDAIEAAKA  120 (535)
T ss_pred             CCCHHHHHHH
T ss_conf             6986999999


No 226
>pfam04053 Coatomer_WDAD Coatomer WD associated region. This region is composed of WD40 repeats.
Probab=95.68  E-value=0.13  Score=27.59  Aligned_cols=129  Identities=17%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             HHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99874100124466655663275210013555532100000112588764221100002335669999999742111110
Q gi|254780592|r   79 VLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEAL  158 (271)
Q Consensus        79 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~  158 (271)
                      .....|+++++...+...--+.|.  .-...+...+...|..+.|+...        .+++..+.   +....|+.+.|.
T Consensus       264 ~av~r~d~~~~~~~~~~~~l~~p~--~~~~~i~~fLe~~G~~e~AL~~~--------~D~~~rFe---LAl~lG~L~~A~  330 (435)
T pfam04053       264 TALLRKDYEEVLRIIANSNLLPPK--DQGQKIIRFLEKKGYPELALQFV--------TDPDTRFD---LALELGNLDVAL  330 (435)
T ss_pred             HHHHCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHCCCHHHHHHHC--------CCHHHHHH---HHHHCCCHHHHH
T ss_conf             999757788999876421336873--46679999999779788887660--------89047616---768619999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             000000000000001245777654332235543599999995389854788899999998699899999999862
Q gi|254780592|r  159 IEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       159 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      +...+.     ++..-|..+|...+.+|+++-|+.+|+++-        -+..|..+|...|+.+.=.++.+.+-
T Consensus       331 ~~A~~~-----~~~~~Wk~Lg~~AL~~g~~~lAe~~~~k~~--------d~~~LllLy~~tG~~~~L~kl~~~a~  392 (435)
T pfam04053       331 EIAKEL-----DDEHKWKRLGDAALSQGNIKLAEEAYQKAK--------DFDKLLLLYLSTGNKEKLKKLAKIAE  392 (435)
T ss_pred             HHHHHH-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHC--------CHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999873-----679999999999997499589999999742--------53455999998499999999999999


No 227
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.65  E-value=0.0097  Score=34.44  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             9999999998741001244666556632752
Q gi|254780592|r   72 IGIVYADVLRRVGRTAQALAVMRQVAILYPE  102 (271)
Q Consensus        72 ~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~  102 (271)
                      ++.++|.+|...|++++|+..++++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~Ai~~~~~al~~~p~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf             8999899999823699999999997735999


No 228
>KOG1550 consensus
Probab=95.61  E-value=0.14  Score=27.42  Aligned_cols=115  Identities=12%  Similarity=0.011  Sum_probs=43.6

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-
Q ss_conf             0199999999999995-----7578799999999998741-----0012446665566327521001355553210000-
Q gi|254780592|r   50 EQLLEVTSTIGLQYQS-----HTKNKMIGIVYADVLRRVG-----RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAG-  118 (271)
Q Consensus        50 ~~~~~A~~~~~~al~~-----~P~~~~~~~~~a~~l~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-  118 (271)
                      +|.+.|+.++..+.+.     .-.++.+...+|.+|.+..     +...|..++.++....  ++.+...+|.++..-. 
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~  340 (552)
T KOG1550         263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK  340 (552)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCC
T ss_conf             6899999999999886256665047422479999998189875124999999999998559--90489998898762763


Q ss_pred             --CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCC
Q ss_conf             --011258876422110000233566999999974----21111100000000000
Q gi|254780592|r  119 --YLDEGLDAINRAQRPDIPDWQLISAKGSVLAQM----GKHSEALIEYERALELS  168 (271)
Q Consensus       119 --~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~~~~~~  168 (271)
                        +...|..+|..+....  +..+...++.|+..-    .+...|...+.++.+..
T Consensus       341 ~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550         341 ERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             213889999999999759--989999999999747786887789999999999827


No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.48  E-value=0.15  Score=27.15  Aligned_cols=174  Identities=9%  Similarity=0.033  Sum_probs=99.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----
Q ss_conf             999999957578799999999998741001244666556632752100135555321000001125887642211-----
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR-----  132 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-----  132 (271)
                      .+.+++..-|-.++.|+.+..-+...++-..|+...+++....|.   ....++.++....+-+.....|++.+.     
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~  366 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK  366 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC---HHEEHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999888885512999887899986234888899999824668972---32009987753066888763288899999999


Q ss_pred             -------------HHCHH-HHH-----------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHH
Q ss_conf             -------------00002-335-----------6699999997421111100000000000000012457776-543322
Q gi|254780592|r  133 -------------PDIPD-WQL-----------ISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM-SYLLMG  186 (271)
Q Consensus       133 -------------~~p~~-~~~-----------~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~~~~g  186 (271)
                                   .+|.. .+.           +..+-+...+..-.+.|...|.++.+..-....++..-+. -+..+|
T Consensus       367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~  446 (660)
T COG5107         367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG  446 (660)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCC
T ss_conf             86220031015668710148999998753236788999999987558999999999712577775234317788988618


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             355435999999953898547888999999986998999999998629
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      ++..|-..|+--+...|+++-..+..-..+...++-..|..++++++.
T Consensus       447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             953178999877773799538999999999870847778999987688


No 230
>KOG2041 consensus
Probab=95.47  E-value=0.15  Score=27.11  Aligned_cols=13  Identities=8%  Similarity=-0.056  Sum_probs=4.9

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8799999999998
Q gi|254780592|r   69 NKMIGIVYADVLR   81 (271)
Q Consensus        69 ~~~~~~~~a~~l~   81 (271)
                      +|..|-.+|+.-.
T Consensus       691 HprLWrllAe~Al  703 (1189)
T KOG2041         691 HPRLWRLLAEYAL  703 (1189)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             6689999999999


No 231
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42  E-value=0.16  Score=27.01  Aligned_cols=94  Identities=14%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHH-----CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Q ss_conf             98999999999999985403685433----117999999842-----01999999999999957-578799999999998
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPRIS----IPDPESLENMNH-----EQLLEVTSTIGLQYQSH-TKNKMIGIVYADVLR   81 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~-P~~~~~~~~~a~~l~   81 (271)
                      ++.+.-+-+++.++.++||...|.+.    ....+-.+.+..     .+..+-...+.+.-.++ |--|..+-.+|..|.
T Consensus         4 ~ktlsr~al~~av~~LagC~~gpKslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys   83 (121)
T COG4259           4 LKTLSRLALLLAVAALAGCGGGPKSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYS   83 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             48899999999999998805798641013786389999981788788999999999999751489999727888777886


Q ss_pred             HHHCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             741001244666556632752100
Q gi|254780592|r   82 RVGRTAQALAVMRQVAILYPEDQE  105 (271)
Q Consensus        82 ~~g~~~~A~~~~~~al~~~p~~~~  105 (271)
                      +.|+.++|+..|+.--.+.|+...
T Consensus        84 ~~G~~e~a~~eFetEKalFPES~~  107 (121)
T COG4259          84 NSGKDEQAVREFETEKALFPESGV  107 (121)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             049828999999876640766016


No 232
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.28  E-value=0.017  Score=33.01  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2457776543322355435999999953898
Q gi|254780592|r  174 IVSNIAMSYLLMGDLKTAEEKLRFASQMIGA  204 (271)
Q Consensus       174 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  204 (271)
                      ++.++|.+|..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~Ai~~~~~al~~~p~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf             8999899999823699999999997735999


No 233
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.20  E-value=0.043  Score=30.50  Aligned_cols=65  Identities=12%  Similarity=0.047  Sum_probs=38.7

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             201999999999999957578799999-99999874100124466655663275210013555532
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIV-YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKS  113 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~-~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  113 (271)
                      .+-+.+--..+..+++++|.|.+.|+. -+.-+...++.+.+.+.+.+++..+|+.+..|..+-+.
T Consensus       120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             878989999999999619987405656300035441567989999986531488984299999999


No 234
>KOG3364 consensus
Probab=95.12  E-value=0.14  Score=27.32  Aligned_cols=79  Identities=13%  Similarity=0.000  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHH-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             12457776543322---35543599999995-38985-478889999999869989999999986291728665999999
Q gi|254780592|r  173 SIVSNIAMSYLLMG---DLKTAEEKLRFASQ-MIGAD-SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKS  247 (271)
Q Consensus       173 ~~~~~~~~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~  247 (271)
                      ....+++++++...   |..+.+..++..++ -.|.. .+..+.||.-+...|+|+.+..+.+..|..+|++....-++.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364          33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             88899999997464258999769999998610684000132135677788886589999999999960877078999999


Q ss_pred             HHHH
Q ss_conf             9983
Q gi|254780592|r  248 ILSQ  251 (271)
Q Consensus       248 ~l~~  251 (271)
                      .+..
T Consensus       113 ~ied  116 (149)
T KOG3364         113 TIED  116 (149)
T ss_pred             HHHH
T ss_conf             9999


No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.08  E-value=0.2  Score=26.36  Aligned_cols=75  Identities=8%  Similarity=0.035  Sum_probs=49.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             999999957578799999999998741001244666556632752100135555321000001125887642211
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR  132 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  132 (271)
                      -++.-++.+|.|...|+.+..-|..+|.+++-.+.+++...-.|-.+.+|..+-.......++......|.+.+.
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~  104 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK  104 (660)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             899986139431899999999984020489999999985488766437899986015545358899999999976


No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04  E-value=0.21  Score=26.30  Aligned_cols=97  Identities=18%  Similarity=0.131  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHC
Q ss_conf             9999974211111000000000000000----12457776543322355435999999-953898547888999999986
Q gi|254780592|r  145 GSVLAQMGKHSEALIEYERALELSPNES----SIVSNIAMSYLLMGDLKTAEEKLRFA-SQMIGADSRIRQNLALVVGLQ  219 (271)
Q Consensus       145 g~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~La~~~~~~  219 (271)
                      +.+....|+...|...|...-...+-+.    .++..-+.+++..|-|++-..-.+.. ...+|-...++..||+.-...
T Consensus       101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka  180 (221)
T COG4649         101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA  180 (221)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99986126478899989988525787601367999987898743564888998741304899701788999876888732


Q ss_pred             CCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9989999999986291728665
Q gi|254780592|r  220 GRMKEAYSIASQELSPEEATRN  241 (271)
Q Consensus       220 g~~~eA~~~~~~~L~~~~~~~~  241 (271)
                      |++..|.+.|.+..+..+...+
T Consensus       181 gd~a~A~~~F~qia~Da~aprn  202 (221)
T COG4649         181 GDFAKAKSWFVQIANDAQAPRN  202 (221)
T ss_pred             CCHHHHHHHHHHHHCCCCCCHH
T ss_conf             2467799999999701469677


No 237
>pfam07719 TPR_2 Tetratricopeptide repeat. This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Probab=95.03  E-value=0.013  Score=33.64  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             9999999998741001244666556632752
Q gi|254780592|r   72 IGIVYADVLRRVGRTAQALAVMRQVAILYPE  102 (271)
Q Consensus        72 ~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~  102 (271)
                      ++..+|.++...|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~p~   33 (34)
T pfam07719         3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN   33 (34)
T ss_pred             HHHHCCHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             6875014876216699999999997726999


No 238
>pfam04781 DUF627 Protein of unknown function (DUF627). This family represents the N-terminal region of several plant proteins of unknown function.
Probab=94.97  E-value=0.16  Score=26.92  Aligned_cols=27  Identities=22%  Similarity=0.133  Sum_probs=12.4

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf             999987410012446665566327521
Q gi|254780592|r   77 ADVLRRVGRTAQALAVMRQVAILYPED  103 (271)
Q Consensus        77 a~~l~~~g~~~~A~~~~~~al~~~p~~  103 (271)
                      |.-+.+.|++-+|+++.++.+..++++
T Consensus         3 A~~~~~~GnhiKAL~iied~is~h~~~   29 (112)
T pfam04781         3 ARDLFAKGDYIKALEIIEDSISDHGKD   29 (112)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             589987657599999999999872676


No 239
>pfam04781 DUF627 Protein of unknown function (DUF627). This family represents the N-terminal region of several plant proteins of unknown function.
Probab=94.92  E-value=0.093  Score=28.43  Aligned_cols=47  Identities=19%  Similarity=0.019  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             43599999995389854788899999998699899999999862917
Q gi|254780592|r  190 TAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       190 ~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      .++.++.++..+.|......+.||.-+...--++++....+++|+..
T Consensus        62 ~sve~~s~~~~Lsp~~A~sL~~la~~l~s~~~Ykk~v~kak~aLsv~  108 (112)
T pfam04781        62 GSVECFSEDVLLSPDAANSLFELGQQLGSVMYYKKAVKKAKQALSVT  108 (112)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999988750187899999999999702889999999999871666


No 240
>pfam09613 HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK). This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.88  E-value=0.23  Score=26.03  Aligned_cols=72  Identities=7%  Similarity=-0.058  Sum_probs=55.0

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             201999999999999957578799999999998741001244666556632752100135555321000001
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL  120 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  120 (271)
                      .++...+...++-.--..|+++++-+.-|-.+...|++++|+.++.++....|..+.....++.|+..+|+.
T Consensus        23 ~~~~~D~e~lL~AlRvLRP~~~e~d~~dg~l~i~rg~w~dA~r~lr~v~~~~~~~~~~kAL~A~CL~a~~D~   94 (156)
T pfam09613        23 LADIADAEELLEALRILRPRLAELDLFDGWLYIGRGQWDDAARLLRELEGRASHLPLCKALMAQCLFALQDP   94 (156)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf             488778999999999858983266587877877606589999999998626778489999999999874796


No 241
>pfam09613 HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK). This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.73  E-value=0.13  Score=27.59  Aligned_cols=102  Identities=14%  Similarity=0.045  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             42111110000000000000001245777654332235543599999995389854788899999998699899999999
Q gi|254780592|r  151 MGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIAS  230 (271)
Q Consensus       151 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~  230 (271)
                      .++++++...+....-+.|+.+.+-.--|.+++..|++++|+..|+......+..+...-.++.++..+|+.+= ..+.+
T Consensus        23 ~~~~~D~e~lL~AlRvLRP~~~e~d~~dg~l~i~rg~w~dA~r~lr~v~~~~~~~~~~kAL~A~CL~a~~D~~W-r~~A~  101 (156)
T pfam09613        23 LADIADAEELLEALRILRPRLAELDLFDGWLYIGRGQWDDAARLLRELEGRASHLPLCKALMAQCLFALQDPAW-REYAD  101 (156)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH-HHHHH
T ss_conf             48877899999999985898326658787787760658999999999862677848999999999987479679-99999


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             86291728665999999998321
Q gi|254780592|r  231 QELSPEEATRNIKYIKSILSQRD  253 (271)
Q Consensus       231 ~~L~~~~~~~~~~~l~~~l~~~~  253 (271)
                      .+|...+........+.++.+.+
T Consensus       102 evLe~~~~~~~~~LV~aL~~~~~  124 (156)
T pfam09613       102 EVLEEGGDPEALTLVKALLARAE  124 (156)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99861899018999999998899


No 242
>pfam07719 TPR_2 Tetratricopeptide repeat. This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Probab=94.69  E-value=0.024  Score=32.08  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2457776543322355435999999953898
Q gi|254780592|r  174 IVSNIAMSYLLMGDLKTAEEKLRFASQMIGA  204 (271)
Q Consensus       174 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  204 (271)
                      .+..+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~p~   33 (34)
T pfam07719         3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN   33 (34)
T ss_pred             HHHHCCHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             6875014876216699999999997726999


No 243
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.68  E-value=0.069  Score=29.21  Aligned_cols=88  Identities=7%  Similarity=-0.030  Sum_probs=71.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHCHH
Q ss_conf             999999575787999999999987410012446665566327521001355-5532100000112588764221100002
Q gi|254780592|r   59 IGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAA-YGKSLANAGYLDEGLDAINRAQRPDIPD  137 (271)
Q Consensus        59 ~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~g~~~~A~~~~~~a~~~~p~~  137 (271)
                      |.+.-.+-|+|+..|..++.--...|-+.+--.++.++++.+|.+.+.|.. -..-+...++++.+...+.+++..+|..
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             EEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf             65512027887089999999999987898999999999961998740565630003544156798999998653148898


Q ss_pred             HHHHHHHHH
Q ss_conf             335669999
Q gi|254780592|r  138 WQLISAKGS  146 (271)
Q Consensus       138 ~~~~~~lg~  146 (271)
                      +..|...-.
T Consensus       176 p~iw~eyfr  184 (435)
T COG5191         176 PRIWIEYFR  184 (435)
T ss_pred             CHHHHHHHH
T ss_conf             429999999


No 244
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.67  E-value=0.051  Score=30.00  Aligned_cols=65  Identities=23%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             99998741001244666556632752100135555321000001125887642211000023356
Q gi|254780592|r   77 ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLI  141 (271)
Q Consensus        77 a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  141 (271)
                      +..+...|+.+-|.+.+.+++.+-|+....|..+|......|+++.|...|++.++.+|.+....
T Consensus         2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga   66 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA   66 (287)
T ss_pred             CCHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             30010367848999999877504704443455402366630418999999998870796212223


No 245
>KOG3616 consensus
Probab=94.45  E-value=0.29  Score=25.39  Aligned_cols=14  Identities=21%  Similarity=0.185  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             76543322355435
Q gi|254780592|r  179 AMSYLLMGDLKTAE  192 (271)
Q Consensus       179 ~~~~~~~g~~~~A~  192 (271)
                      |..+.+.|+++.|+
T Consensus       713 g~hl~~~~q~daai  726 (1636)
T KOG3616         713 GDHLEQIGQLDAAI  726 (1636)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             58999987677998


No 246
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.00  E-value=0.36  Score=24.82  Aligned_cols=80  Identities=14%  Similarity=0.013  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             01245777654332235543599999995389854788899999998699899999999862917286659999999983
Q gi|254780592|r  172 SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQ  251 (271)
Q Consensus       172 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~~  251 (271)
                      .....++-..+...++++.|..+.++.+.++|.++.-+.--|.+|.++|.+.-|...++..+..-|.+.....++..+.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999999984056999999999875189984431670899986488445699999999849993578999999999


No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.91  E-value=0.38  Score=24.72  Aligned_cols=79  Identities=16%  Similarity=0.064  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-------CCCCCCCHHH
Q ss_conf             000124577765433223554359999999538985478889999999869989999999986-------2917286659
Q gi|254780592|r  170 NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQE-------LSPEEATRNI  242 (271)
Q Consensus       170 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~-------L~~~~~~~~~  242 (271)
                      ....++..++..+...|+++.+++.+++.+..+|-+...|..+-..|...|+...|+..|++.       +..+|.....
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             99999999999987312188999999999862964649999999999975880689999999999754304899408999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780592|r  243 KYIKSI  248 (271)
Q Consensus       243 ~~l~~~  248 (271)
                      ..+...
T Consensus       231 ~~y~~~  236 (280)
T COG3629         231 ALYEEI  236 (280)
T ss_pred             HHHHHH
T ss_conf             989998


No 248
>pfam04184 ST7 ST7 protein. The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.55  E-value=0.44  Score=24.32  Aligned_cols=153  Identities=14%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10012446665566327521001355553210000011258876422110000233566999999974211111000000
Q gi|254780592|r   84 GRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYER  163 (271)
Q Consensus        84 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  163 (271)
                      -++..-+....++++++|+...++..++.-  +..-.-+|...++++++......    ..+.-....+...++      
T Consensus       182 Rnp~~RIkaA~~ALe~n~dCatAyiLLAEE--EatTI~eaE~~~kqALK~~E~~y----r~sq~~qh~~~~~ea------  249 (540)
T pfam04184       182 RNPQARIQAAYQALEINPECATAYVLLAEE--EATTITEAERLFKQALKAGESTY----RSSQQIASYGQQGDA------  249 (540)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCHHH------
T ss_conf             191989999999987197418889998642--10469999999999999888887----655553055751024------


Q ss_pred             CCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCC
Q ss_conf             00000000--0124577765433223554359999999538985--478889999999869989999999986291-728
Q gi|254780592|r  164 ALELSPNE--SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD--SRIRQNLALVVGLQGRMKEAYSIASQELSP-EEA  238 (271)
Q Consensus       164 ~~~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~La~~~~~~g~~~eA~~~~~~~L~~-~~~  238 (271)
                       +-.+..+  .-+...++.+--++|+.++|++.++..++--|--  -.+..||..++.+...+.+...++.+-=+. -|.
T Consensus       250 -~~rrd~nv~vyikRRlAMCaRklgr~kEAvKm~rDL~ke~p~~~~lniheNLiEalLe~QaYadvQavLakYDdislPk  328 (540)
T pfam04184       250 -QHRRDTNVLVYIKRRLAMCARKLGRTREAVKMMRDLMKEFPLLSMLNIHENLLEALLELQAYADVQAVLAKYDDISLPK  328 (540)
T ss_pred             -HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             -5523573143108899999987511899999999998757236776788999999999888899999997602356863


Q ss_pred             CHHHHHHHHHH
Q ss_conf             66599999999
Q gi|254780592|r  239 TRNIKYIKSIL  249 (271)
Q Consensus       239 ~~~~~~l~~~l  249 (271)
                      .+.+-|-.+++
T Consensus       329 SAticyTaALL  339 (540)
T pfam04184       329 SATICYTAALL  339 (540)
T ss_pred             HHHHHHHHHHH
T ss_conf             47898999999


No 249
>KOG0546 consensus
Probab=93.32  E-value=0.17  Score=26.83  Aligned_cols=73  Identities=15%  Similarity=0.014  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             0012457776543322355435999999953898547888999999986998999999998629172866599
Q gi|254780592|r  171 ESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIK  243 (271)
Q Consensus       171 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~  243 (271)
                      -.....+.+..-+..+++..|......++..++..+.+++..+..+....++++|..-++.+....|.+..+.
T Consensus       274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~  346 (372)
T KOG0546         274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE  346 (372)
T ss_pred             CCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             0000023677512136777623216400236811182888877688764345666778887542285449999


No 250
>KOG0276 consensus
Probab=93.29  E-value=0.48  Score=24.07  Aligned_cols=48  Identities=21%  Similarity=0.096  Sum_probs=21.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10000011258876422110000233566999999974211111000000000
Q gi|254780592|r  114 LANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus       114 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                      ..++|+++.|.+...++     +...-|-.+|......++...|.+++.++..
T Consensus       647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276         647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             HHHCCCHHHHHHHHHHH-----CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             45527188899987752-----3667799999998641663458999975304


No 251
>KOG4814 consensus
Probab=93.07  E-value=0.52  Score=23.86  Aligned_cols=87  Identities=14%  Similarity=0.021  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             99999987410012446665566327521------001355553210000011258876422110000233566999999
Q gi|254780592|r   75 VYADVLRRVGRTAQALAVMRQVAILYPED------QEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVL  148 (271)
Q Consensus        75 ~~a~~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~  148 (271)
                      +-|.-+.+..+|.-++..|+.-+.-.|.+      ......+..||..+.+.|.|.+.++.+.+.+|..+-.........
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814         359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             88887753776899999999988744750465789999999999982599887799999999860732388999999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9742111110000
Q gi|254780592|r  149 AQMGKHSEALIEY  161 (271)
Q Consensus       149 ~~~~~~~~A~~~~  161 (271)
                      ..-+..++|....
T Consensus       439 ~~E~~Se~AL~~~  451 (872)
T KOG4814         439 LAEDKSEEALTCL  451 (872)
T ss_pred             HHHCCHHHHHHHH
T ss_conf             9832217789999


No 252
>TIGR00540 hemY_coli hemY protein; InterPro: IPR005254    This is a family of uncharacterised proteins encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (Escherichia coli and Haemophilus influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.  .
Probab=92.69  E-value=0.59  Score=23.53  Aligned_cols=79  Identities=13%  Similarity=0.113  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32235543599999995389854--78889999999869989999999986--291728665999999998321299999
Q gi|254780592|r  184 LMGDLKTAEEKLRFASQMIGADS--RIRQNLALVVGLQGRMKEAYSIASQE--LSPEEATRNIKYIKSILSQRDPWKKIA  259 (271)
Q Consensus       184 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~La~~~~~~g~~~eA~~~~~~~--L~~~~~~~~~~~l~~~l~~~~~~~~~a  259 (271)
                      ...+...-...+++-.+.-.+..  -.+..+|..+...|.+.++...++..  +...+...+.....-.+.+........
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  390 (409)
T TIGR00540       311 KPEDPEKLLKLLEKRAKNVGDKPKCLLWRALGYLLVKNGEWIEAADAFKNVAALPERPDAYDLAWLADALDRLGDPELAE  390 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             66765789999998874035203677777766677621204578888776664010010346889999987405656888


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780592|r  260 KAR  262 (271)
Q Consensus       260 ~a~  262 (271)
                      ..+
T Consensus       391 ~~~  393 (409)
T TIGR00540       391 AVR  393 (409)
T ss_pred             HHH
T ss_conf             887


No 253
>pfam11207 DUF2989 Protein of unknown function (DUF2989). Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.36  E-value=0.65  Score=23.27  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHCCCH
Q ss_conf             9974211111000000000-00000012457776543322355435999999953898----547888999999986998
Q gi|254780592|r  148 LAQMGKHSEALIEYERALE-LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA----DSRIRQNLALVVGLQGRM  222 (271)
Q Consensus       148 ~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~La~~~~~~g~~  222 (271)
                      +.+.|+ +.|...|.+.-. -.-+++.....+|..| ...|.+.++..+.+++++...    ++++...||.++..+|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~k~d~~Kt~~Ll~~aL~l~~~~d~~n~eil~sLas~~~~~~~~  194 (203)
T pfam11207       117 WSRFGD-QAALRRFLALEGQPELETPELQYALATYY-IKRDPDKTIQLLYRALELYTPGDKFNPEILLSLASIYQKQKNY  194 (203)
T ss_pred             HHCCCC-HHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             621597-99999999863899889899999999999-8048899999999999805876757979999999999871421


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780592|r  223 KEAY  226 (271)
Q Consensus       223 ~eA~  226 (271)
                      +.|.
T Consensus       195 ~~AY  198 (203)
T pfam11207       195 EQAY  198 (203)
T ss_pred             HHHE
T ss_conf             3430


No 254
>KOG3783 consensus
Probab=92.17  E-value=0.68  Score=23.13  Aligned_cols=90  Identities=8%  Similarity=-0.027  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999999999957578799999999998741001244666556632752100----13555532100000112588764
Q gi|254780592|r   53 LEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE----VLAAYGKSLANAGYLDEGLDAIN  128 (271)
Q Consensus        53 ~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~g~~~~A~~~~~  128 (271)
                      ....+.+.+..+..|+++...+..+..+...|+.+.|+..+...+.  +.-.+    -+..++.++.-+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783         250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999986889974899850999998899970647989999982162--89999999999999999999999887761899


Q ss_pred             HHHHHHCHHHHHHHHH
Q ss_conf             2211000023356699
Q gi|254780592|r  129 RAQRPDIPDWQLISAK  144 (271)
Q Consensus       129 ~a~~~~p~~~~~~~~l  144 (271)
                      ..........-.|..+
T Consensus       328 ~L~desdWS~a~Y~Yf  343 (546)
T KOG3783         328 LLRDESDWSHAFYTYF  343 (546)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9875544558889999


No 255
>KOG1464 consensus
Probab=92.05  E-value=0.7  Score=23.05  Aligned_cols=52  Identities=10%  Similarity=0.066  Sum_probs=41.4

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             8420199999999999995757879----999999999874100124466655663
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSHTKNKM----IGIVYADVLRRVGRTAQALAVMRQVAI   98 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~P~~~~----~~~~~a~~l~~~g~~~~A~~~~~~al~   98 (271)
                      +...+..+|+..|++.++..|...+    ++.....+..+.|++++-.+.+++.+.
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464          38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             44368799999999999416643426799999888777504667999999999999


No 256
>KOG1538 consensus
Probab=91.81  E-value=0.75  Score=22.87  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             99999998741001244666556
Q gi|254780592|r   74 IVYADVLRRVGRTAQALAVMRQV   96 (271)
Q Consensus        74 ~~~a~~l~~~g~~~~A~~~~~~a   96 (271)
                      +.+|.++.-.|++.+|..+|++.
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538         636 LLLADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             89898987755689999999974


No 257
>pfam09797 NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit. This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae this subunit is called MDM20 and in Schizosaccharomyces pombe it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1.
Probab=91.53  E-value=0.8  Score=22.69  Aligned_cols=47  Identities=17%  Similarity=0.039  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             22355435999999953898547888999999986998999999998
Q gi|254780592|r  185 MGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       185 ~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      .+..-+|+..++.++..+|.+.....-|..+|..+|-.+-|...+..
T Consensus       192 ~~~l~~ai~lLE~~l~~sp~n~~~kLlLvrlY~~LG~~~~A~~~~~~  238 (365)
T pfam09797       192 LEYLLEAIALLENGLKKSPHNYDLKLLLIRLYLLLGAASLAYEHYEK  238 (365)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             68999999999999857985689999999999986991799999986


No 258
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.20  E-value=0.87  Score=22.49  Aligned_cols=94  Identities=11%  Similarity=-0.059  Sum_probs=50.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH-----HC--CHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             9842019999999999999575787---9999999999874-----10--012446665566327521001355553210
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNK---MIGIVYADVLRRV-----GR--TAQALAVMRQVAILYPEDQEVLAAYGKSLA  115 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~---~~~~~~a~~l~~~-----g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  115 (271)
                      -++...|++|...|++.-+.-|...   ++.++.|..+..+     |+  +.+|++-|+++ .-.|.-+--+...+.+|.
T Consensus       485 fl~~k~y~~a~~~yrri~~sfpgr~eg~ea~fr~git~le~a~~~~~~~~~~~al~~f~~l-h~~~~apleylgkalvyq  563 (933)
T PRK13184        485 FLAEKLYDRAAIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGGDQEFTQALSEFSYL-HGGVAAPLEYLGKALVYQ  563 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHH
T ss_conf             7736668999999999986289953007889986389999887604725799999999885-389887578888899998


Q ss_pred             HHCCHHHHHHHHHHHHHHHCHHHHH
Q ss_conf             0000112588764221100002335
Q gi|254780592|r  116 NAGYLDEGLDAINRAQRPDIPDWQL  140 (271)
Q Consensus       116 ~~g~~~~A~~~~~~a~~~~p~~~~~  140 (271)
                      ++|++++-.+.+.-+++..|..++.
T Consensus       564 ~~~~~~eeik~~~la~kry~~hp~i  588 (933)
T PRK13184        564 RLGEYNEEIKSLLLALKRYSQHPEI  588 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             7300789999999999756799873


No 259
>KOG0529 consensus
Probab=91.09  E-value=0.89  Score=22.42  Aligned_cols=129  Identities=12%  Similarity=0.045  Sum_probs=82.4

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCHHH
Q ss_conf             20199999999999995757879999999999874100--1244666556632752100135555321000----00112
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRT--AQALAVMRQVAILYPEDQEVLAAYGKSLANA----GYLDE  122 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----g~~~~  122 (271)
                      +..+++-+.+...+++.+|++..+|..+.-++.+.+..  ..-+.+.+++++.+|.+-..|.-.-.+....    ....+
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~  167 (421)
T KOG0529          88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE  167 (421)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHH
T ss_conf             87628889999999985732688999999999748982388899999998713855454168999999987313445356


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             58876422110000233566999999974211------------11100000000000000012457
Q gi|254780592|r  123 GLDAINRAQRPDIPDWQLISAKGSVLAQMGKH------------SEALIEYERALELSPNESSIVSN  177 (271)
Q Consensus       123 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~------------~~A~~~~~~~~~~~p~~~~~~~~  177 (271)
                      -+++..+.+..++.+..+|..+..++...-..            ..-.+.-..++-.+|++...|..
T Consensus       168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529         168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             7888999986263323578889999987513334676577798999999999988458554650242


No 260
>pfam00637 Clathrin Region in Clathrin and VPS. Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Probab=91.07  E-value=0.89  Score=22.41  Aligned_cols=39  Identities=10%  Similarity=0.177  Sum_probs=14.6

Q ss_pred             HHHHHHCCHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
Q ss_conf             998741001244666556632-752100135555321000
Q gi|254780592|r   79 VLRRVGRTAQALAVMRQVAIL-YPEDQEVLAAYGKSLANA  117 (271)
Q Consensus        79 ~l~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~  117 (271)
                      .+...|.+.+-..+++.++.. ...++.....+..++...
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~t~L~~ly~~~   55 (139)
T pfam00637        16 LFEKAGLLEELIPYLESALKSNFSNDPALQTALLELYAKY   55 (139)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             9988799389999999998416210337999999999983


No 261
>pfam10255 Paf67 RNA polymerase I-associated factor PAF67. RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.
Probab=90.84  E-value=0.94  Score=22.28  Aligned_cols=96  Identities=10%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-------CH--------HHHHHHHHHHHHCCHHHHHHHHHHHH--
Q ss_conf             87999999999987410012446665566327521-------00--------13555532100000112588764221--
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED-------QE--------VLAAYGKSLANAGYLDEGLDAINRAQ--  131 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~-------~~--------~~~~~~~~~~~~g~~~~A~~~~~~a~--  131 (271)
                      +...-++.-..+....+..+-++..+..  .+|..       ..        +...+.++..-+|+|..|++.++..-  
T Consensus        74 ~~~~VLn~L~sLv~kS~I~e~l~~~~~g--~~~~~~~~~~g~~~l~~~LGYFSlIgLlRlhvLLGDY~~Alk~L~~Idl~  151 (402)
T pfam10255        74 NVYSVLNVLYSLVDKSQIFEQLEAEKAG--EDPSEVADEYGSSNLYKMLGYFSIIGLLRVHVLLGDYYLALKVLEPIDLS  151 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf             3488999999999987389999987447--99355533556641999989999999999987005689999975241446


Q ss_pred             ------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             ------10000233566999999974211111000000000
Q gi|254780592|r  132 ------RPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus       132 ------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                            ..-+-....+...|-+|...+++.+|+..|...+-
T Consensus       152 ~~~l~~kV~~~~vs~~YyvGFaYlMlrRY~DAir~f~~iL~  192 (402)
T pfam10255       152 KKGLYSKVPAAYVSLYYYVGFAYLMLRRYADAIRVFSQILI  192 (402)
T ss_pred             CCHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32010247404021245889999998658999999999999


No 262
>pfam09670 Cas_Cas02710 CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=90.57  E-value=0.99  Score=22.13  Aligned_cols=58  Identities=9%  Similarity=-0.058  Sum_probs=32.8

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHH--HCCHHHHHHHHHHHHCC
Q ss_conf             99998420199999999999995757879--999999999874--10012446665566327
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKM--IGIVYADVLRRV--GRTAQALAVMRQVAILY  100 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~--~~~~~a~~l~~~--g~~~~A~~~~~~al~~~  100 (271)
                      +...++.++|..|...++.+...-|.+..  .+..+...|...  -++.+|...+++.+...
T Consensus       138 a~~lfn~~~y~~A~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f~~~~A~~~L~~~~~~~  199 (379)
T pfam09670       138 AIRLFNKGDYGSALRILEDLARRLPGRKDYAAYKLLSEGYLAWDSFDHEEAADYLSKVLALL  199 (379)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99988456889999999999873797457999999999999986558999999999988754


No 263
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.48  E-value=1  Score=22.08  Aligned_cols=74  Identities=18%  Similarity=0.057  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCH--HHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHCCHHHHHH
Q ss_conf             99999999985403685433117999999842019--9999999999995757879999---999999874100124466
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQL--LEVTSTIGLQYQSHTKNKMIGI---VYADVLRRVGRTAQALAV   92 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~P~~~~~~~---~~a~~l~~~g~~~~A~~~   92 (271)
                      +...|..+.++||.....       ..++.+..++  .-+...|++..+.-|++....+   +-|.++...|++.++...
T Consensus         8 I~s~I~~L~LTgC~N~~~-------~~~hf~atl~y~~~~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~   80 (449)
T COG3014           8 IMSVILGLSLTGCINYRM-------DLEHFNATLYYEESPKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGV   80 (449)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             344566763598776787-------7653236788875205589999886011268888756400789876667765305


Q ss_pred             HHHHHH
Q ss_conf             655663
Q gi|254780592|r   93 MRQVAI   98 (271)
Q Consensus        93 ~~~al~   98 (271)
                      +.-+-+
T Consensus        81 ldAae~   86 (449)
T COG3014          81 LDAAEQ   86 (449)
T ss_pred             HHHHHH
T ss_conf             899999


No 264
>pfam09986 DUF2225 Uncharacterized protein conserved in bacteria (DUF2225). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=90.21  E-value=1.1  Score=21.94  Aligned_cols=64  Identities=23%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHCCC--C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             4577765433223-------5543599999995389--8----5478889999999869989999999986291728
Q gi|254780592|r  175 VSNIAMSYLLMGD-------LKTAEEKLRFASQMIG--A----DSRIRQNLALVVGLQGRMKEAYSIASQELSPEEA  238 (271)
Q Consensus       175 ~~~~~~~~~~~g~-------~~~A~~~~~~al~~~p--~----~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~  238 (271)
                      ...++++|-.+|+       +..|...|+++.+...  .    ...+.+.+|.+....|++++|...+.+.+.....
T Consensus       121 ~LriAWlyR~~~~~e~E~~fl~~Al~~y~~ay~~e~~~~~~~~e~~l~YLigeL~rRlG~~~eA~~wfs~vi~~~~~  197 (214)
T pfam09986       121 CLRLAWLYRLLGDEEKELLFLKKALELYKEAYEKEDFPIEGIDEATLMYLIGELSRRLGNKEEALRWFSKVIGSPKA  197 (214)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf             99999986225885899999999999999999606688777118899999999999949999999999999639666


No 265
>pfam10602 RPN7 26S proteasome subunit RPN7. RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins.
Probab=90.09  E-value=1.1  Score=21.88  Aligned_cols=96  Identities=15%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--CHHHHHHH---
Q ss_conf             999999999987410012446665566327521---0013555532100000112588764221100--00233566---
Q gi|254780592|r   71 MIGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGKSLANAGYLDEGLDAINRAQRPD--IPDWQLIS---  142 (271)
Q Consensus        71 ~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~---  142 (271)
                      .++..+|.-|.+.|+.+.|+..|.++.+.....   ......+-++-...++|........++....  +.++...+   
T Consensus        37 ~~~~~l~~~y~~iGd~~~A~k~y~~~~~~~ts~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~e~ggDw~r~nrlk  116 (174)
T pfam10602        37 MANLDLGEHYAKIGDLENALKAYSRAREYCTSLGHKIDMCLNLIRVGIFFNDWDHVSKYIEKAKSLIEKGGDWERRNRLK  116 (174)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99999899999966799999999998831788459999999999999997009999999999985651445587898899


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -999999974211111000000000
Q gi|254780592|r  143 -AKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus       143 -~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
                       .-|......+++..|-..|.....
T Consensus       117 ~y~Gl~~l~~r~f~~AA~~fl~~~~  141 (174)
T pfam10602       117 VYEGLALLAIRDFKEAAKLFLDSLS  141 (174)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHCCCC
T ss_conf             9999999971649999999963767


No 266
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.96  E-value=0.53  Score=23.80  Aligned_cols=56  Identities=16%  Similarity=0.090  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             57776543322355435999999953898547888999999986998999999998
Q gi|254780592|r  176 SNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       176 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      .-.+..|...|.+.+|+...++++..+|-+...+..|-.++...|+--++.+.|++
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999759927899999877202704467899999999980650434238999


No 267
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.67  E-value=1.2  Score=21.67  Aligned_cols=13  Identities=8%  Similarity=0.044  Sum_probs=5.6

Q ss_pred             HHHHHHHHCCHHH
Q ss_conf             9999984201999
Q gi|254780592|r   42 ESLENMNHEQLLE   54 (271)
Q Consensus        42 ~~~~~~~~~~~~~   54 (271)
                      ++...+..+|...
T Consensus        39 ~A~~Al~~~d~~~   51 (645)
T PRK11619         39 QIKQAWDNRQMDV   51 (645)
T ss_pred             HHHHHHHCCCHHH
T ss_conf             9999998889999


No 268
>KOG2063 consensus
Probab=89.22  E-value=1.3  Score=21.47  Aligned_cols=162  Identities=16%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHCHHH--------
Q ss_conf             9999999987410012446665566327----52100135555321000001--125887642211000023--------
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILY----PEDQEVLAAYGKSLANAGYL--DEGLDAINRAQRPDIPDW--------  138 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~g~~--~~A~~~~~~a~~~~p~~~--------  138 (271)
                      +..++..|...|++++|+.++.+...-.    +.....+...-..+...+..  +-..++..-....+|...        
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063         507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHEEEEECCC
T ss_conf             99999999862655999999999723644232114443788999998745653668898766543149412205530267


Q ss_pred             ----HHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHH--------HHHHHHHHHH--HHHHHH--
Q ss_conf             ----35669-99999974211111000000000000000-124577765433--------2235543599--999995--
Q gi|254780592|r  139 ----QLISA-KGSVLAQMGKHSEALIEYERALELSPNES-SIVSNIAMSYLL--------MGDLKTAEEK--LRFASQ--  200 (271)
Q Consensus       139 ----~~~~~-lg~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~--------~g~~~~A~~~--~~~al~--  200 (271)
                          ..... ...-+........++.++++.+....... ..+..+...|..        .++-+++.+.  .++...  
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l  666 (877)
T KOG2063         587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL  666 (877)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf             66654689899998765518015689999986740155337899999999999851357111046320345889999876


Q ss_pred             -----CCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             -----3898-------547888999999986998999999998629
Q gi|254780592|r  201 -----MIGA-------DSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       201 -----~~p~-------~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                           .+|+       ....|...|.++.++|+.++|..++-..|.
T Consensus       667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063         667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             HHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4412558422555454011899998887442017899999999962


No 269
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.99  E-value=1.3  Score=21.37  Aligned_cols=41  Identities=15%  Similarity=0.087  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             999999999575787999999999987410012446665566
Q gi|254780592|r   56 TSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVA   97 (271)
Q Consensus        56 ~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al   97 (271)
                      ...+.+.++-+-++...--.++..|.. ++...+..+|.+++
T Consensus       118 ~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~  158 (711)
T COG1747         118 YSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL  158 (711)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_conf             789999999511257879999999997-22054799999999


No 270
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.43  E-value=1.4  Score=21.14  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             9999984201999999999999957578799999999998741001244666556632752100
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQE  105 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~  105 (271)
                      ...+.+....+.+|+...+.-++.+|.|......+-..|--.|++++|...++-+-++.|+...
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             8999987313999999999998649866630567787886466499999998888652901026


No 271
>KOG2422 consensus
Probab=88.36  E-value=1.5  Score=21.11  Aligned_cols=154  Identities=17%  Similarity=0.080  Sum_probs=96.1

Q ss_pred             HCCHHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH------------------
Q ss_conf             20199999999999995------------757879999999999874100124466655663------------------
Q gi|254780592|r   49 HEQLLEVTSTIGLQYQS------------HTKNKMIGIVYADVLRRVGRTAQALAVMRQVAI------------------   98 (271)
Q Consensus        49 ~~~~~~A~~~~~~al~~------------~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~------------------   98 (271)
                      ...|.+|...|.-+.+.            +|-+.+.++.++.+...+|+.+-|...+++++-                  
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422         251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             60789999999989860077642565316884066899999999871224567889998999998874334565655536


Q ss_pred             ---CCCCCCHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHC-----C
Q ss_conf             ---2752100135---5553210000011258876422110000-233566999999-9742111110000000-----0
Q gi|254780592|r   99 ---LYPEDQEVLA---AYGKSLANAGYLDEGLDAINRAQRPDIP-DWQLISAKGSVL-AQMGKHSEALIEYERA-----L  165 (271)
Q Consensus        99 ---~~p~~~~~~~---~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~lg~~~-~~~~~~~~A~~~~~~~-----~  165 (271)
                         .+|++...+.   ..-..+...|=|..|.++.+-.+.++|. ++-....+-.+| .+..+|+--++.++..     +
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l  410 (665)
T KOG2422         331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL  410 (665)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             76456026899999999999888667717899999999523776784157899999999877689999998889861538


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCC
Q ss_conf             0000000124577765433223---5543599999995389
Q gi|254780592|r  166 ELSPNESSIVSNIAMSYLLMGD---LKTAEEKLRFASQMIG  203 (271)
Q Consensus       166 ~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p  203 (271)
                      ..-|+.... ..++..|+....   ...|...+.+|+..-|
T Consensus       411 ~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422         411 SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHCCCCHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             556771478-9999999963872568999999999988571


No 272
>pfam11846 DUF3366 Domain of unknown function (DUF3366). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.73  E-value=1.6  Score=20.87  Aligned_cols=44  Identities=20%  Similarity=0.104  Sum_probs=25.5

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             999999953898547888999999986998999999998629172
Q gi|254780592|r  193 EKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEE  237 (271)
Q Consensus       193 ~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~  237 (271)
                      ..-++.++..| .+.++.+++.++..+|+.++|....+++...-|
T Consensus       132 ~wa~~~l~~~P-~p~~y~~la~~~~~~G~~~~A~~~~~~a~~lyP  175 (193)
T pfam11846       132 EQALKLLRYKP-RPAVYRRLALALALLGKPAEARDWMAQARYLYP  175 (193)
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99999987499-759999999999986999999999999998399


No 273
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=85.86  E-value=0.82  Score=22.63  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             998999999999999985403685433
Q gi|254780592|r   11 FLKKIKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        11 f~~~~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      |.|-++.+++++.++.+++|++++...
T Consensus         3 ~nk~~K~l~ia~~~l~LaACSS~~~~~   29 (173)
T PRK10802          3 LNKVLKGLMIALPVMAIAACSSNKNAS   29 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             078999999999999998557999888


No 274
>KOG0890 consensus
Probab=85.82  E-value=2  Score=20.23  Aligned_cols=60  Identities=8%  Similarity=0.009  Sum_probs=40.3

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             999984201999999999999957578799999999998741001244666556632752
Q gi|254780592|r   43 SLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPE  102 (271)
Q Consensus        43 ~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~  102 (271)
                      -..+-..|+++.|...|+++++.+|++...+...-...+..|++...+...+-.....++
T Consensus      1456 il~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se 1515 (2382)
T KOG0890        1456 ILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE 1515 (2382)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCCH
T ss_conf             999874035889999999862589965320456777654213255787653012102678


No 275
>KOG0128 consensus
Probab=83.11  E-value=2.7  Score=19.50  Aligned_cols=204  Identities=11%  Similarity=0.064  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HC----------------
Q ss_conf             9999999995757879999999999874100124466655663275210013555532100-00----------------
Q gi|254780592|r   56 TSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN-AG----------------  118 (271)
Q Consensus        56 ~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g----------------  118 (271)
                      ...+.+.++..|.-..-|+.+..-....|.+-.-...+++++.-.+.+...|..++...-. ++                
T Consensus       298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c  377 (881)
T KOG0128         298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC  377 (881)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
T ss_conf             87788776552788899999988887448853788888888886044688876554513520356543232151432178


Q ss_pred             -----CHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHH-H------H-------HHHHHHHHHHHHCCCC-C
Q ss_conf             -----01125887642----------21100002335669999999-7------4-------2111110000000000-0
Q gi|254780592|r  119 -----YLDEGLDAINR----------AQRPDIPDWQLISAKGSVLA-Q------M-------GKHSEALIEYERALEL-S  168 (271)
Q Consensus       119 -----~~~~A~~~~~~----------a~~~~p~~~~~~~~lg~~~~-~------~-------~~~~~A~~~~~~~~~~-~  168 (271)
                           -+..+.-.+.+          .+..+-+......+....+. .      .       ..+..|...+...... -
T Consensus       378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~  457 (881)
T KOG0128         378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQL  457 (881)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             52777899989999726752202998778888777888888999998613643166679999999999999999864312


Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CC--CHHH
Q ss_conf             000012457776543-322355435999999953898547-88899999998699899999999862917--28--6659
Q gi|254780592|r  169 PNESSIVSNIAMSYL-LMGDLKTAEEKLRFASQMIGADSR-IRQNLALVVGLQGRMKEAYSIASQELSPE--EA--TRNI  242 (271)
Q Consensus       169 p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~~~La~~~~~~g~~~eA~~~~~~~L~~~--~~--~~~~  242 (271)
                      ......+.+++..+. ..++.+.+...+...+.....+.. .|.....+-...|+...+..++++++..-  +.  ..-.
T Consensus       458 Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~  537 (881)
T KOG0128         458 DTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVL  537 (881)
T ss_pred             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             25789999999999998513354367660544577304789999997679984876517999998872476832689999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999998321299999
Q gi|254780592|r  243 KYIKSILSQRDPWKKIA  259 (271)
Q Consensus       243 ~~l~~~l~~~~~~~~~a  259 (271)
                      .+.+.+......|..+.
T Consensus       538 ~~~~r~Ere~gtl~~~~  554 (881)
T KOG0128         538 EFFRRFEREYGTLESFD  554 (881)
T ss_pred             HHHHHHHHCCCCHHHHH
T ss_conf             99999875056599986


No 276
>PRK10598 hypothetical protein; Provisional
Probab=82.38  E-value=1.6  Score=20.85  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             98999999999999985403685433117999999842
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPRISIPDPESLENMNH   49 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (271)
                      +|++.....++.+..++||.+-...+....+..++++.
T Consensus         1 mkk~~l~~~l~l~~llsGC~~l~qYsISEqEin~YL~~   38 (186)
T PRK10598          1 MKKFLLAAALLVSGLLVGCNQLTQYTISEQEINQYLAK   38 (186)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHH
T ss_conf             91269999999999971435336440079999999987


No 277
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family; InterPro: IPR005699    This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and Pectobacterium chrysanthemi, and the functionally uncharacterised E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport.
Probab=81.06  E-value=3.2  Score=19.04  Aligned_cols=73  Identities=21%  Similarity=0.409  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCC---------CHHHHHHHHHHHCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHH
Q ss_conf             9998999999999999985403685433---------1179999998420199999999999995-7-578799999999
Q gi|254780592|r   10 LFLKKIKCIVFLIPLLLFSSCHLNPRIS---------IPDPESLENMNHEQLLEVTSTIGLQYQS-H-TKNKMIGIVYAD   78 (271)
Q Consensus        10 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~-~-P~~~~~~~~~a~   78 (271)
                      =|+|++-+++++++.+.++||++-.++.         .+-.+.++.+..  .-.|..|++--=++ | |+|..++..--.
T Consensus         4 n~lKkln~~~~~~~~v~lsgCqtPaPvqn~~~~~~a~Vp~~eQleQlAS--~vaa~rYLk~~CnRSDLPdd~~Il~~A~n   81 (136)
T TIGR01004         4 NILKKLNVVLSLLVVVLLSGCQTPAPVQNRAIRKAAAVPASEQLEQLAS--VVAAARYLKVKCNRSDLPDDEAILKVAVN   81 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             3789999999999999864047899888875555787887778999999--99998886420677899700579999999


Q ss_pred             HHHHHH
Q ss_conf             998741
Q gi|254780592|r   79 VLRRVG   84 (271)
Q Consensus        79 ~l~~~g   84 (271)
                      +-...|
T Consensus        82 va~~kG   87 (136)
T TIGR01004        82 VAVKKG   87 (136)
T ss_pred             HHHHHC
T ss_conf             875631


No 278
>KOG1920 consensus
Probab=79.11  E-value=3.7  Score=18.65  Aligned_cols=57  Identities=23%  Similarity=0.194  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----------HHCCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             776543322355435999999----------95389854788---8999999986998999999998629
Q gi|254780592|r  178 IAMSYLLMGDLKTAEEKLRFA----------SQMIGADSRIR---QNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       178 ~~~~~~~~g~~~~A~~~~~~a----------l~~~p~~~~~~---~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      -+..|...|+.++|+..++.+          .+..++..++.   ..|+.-+..++++-||-.+....++
T Consensus       958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920         958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             7999997134899999999836699999998752477778999999999999874163359999999715


No 279
>pfam06474 MLTD_N MLTD_N.
Probab=78.77  E-value=0.48  Score=24.05  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             999999999985403685433117
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRISIPD   40 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~   40 (271)
                      ...++++++.|+||++.+......
T Consensus         3 ~kail~~alLLaGCQst~~~~~~t   26 (93)
T pfam06474         3 AKAVLAAALLLVGCQSTQAVSSTT   26 (93)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             899999999999813799999987


No 280
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=78.15  E-value=2.8  Score=19.41  Aligned_cols=27  Identities=15%  Similarity=0.299  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             999999999999985403685433117
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNPRISIPD   40 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~   40 (271)
                      |.....+++.+++++||++.+...++.
T Consensus         3 k~~~~~~l~~~l~lsgC~s~~~~~t~~   29 (160)
T PRK09967          3 KHLVAPLIFTSLILTGCQSPQGKFTPE   29 (160)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             789999999999998458999998989


No 281
>KOG4056 consensus
Probab=77.84  E-value=4  Score=18.41  Aligned_cols=38  Identities=8%  Similarity=0.183  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             99999999874100124466655663275210013555
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAY  110 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  110 (271)
                      -+.+|+.|...|+.+++..++-.++...|.....+.-+
T Consensus        84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl  121 (143)
T KOG4056          84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL  121 (143)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99868999976578888999988886168779999999


No 282
>KOG3807 consensus
Probab=76.91  E-value=4.3  Score=18.25  Aligned_cols=137  Identities=12%  Similarity=0.058  Sum_probs=57.3

Q ss_pred             HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74100124466655663275210013555532100000112588764221100002335669999999742111110000
Q gi|254780592|r   82 RVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEY  161 (271)
Q Consensus        82 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  161 (271)
                      +.-++.+-+.....+++++|+...++..++.-.  ..-..+|...++++++......    .........|...+|.   
T Consensus       196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~y----r~sqq~qh~~~~~da~---  266 (556)
T KOG3807         196 RERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIY----RQSQQCQHQSPQHEAQ---  266 (556)
T ss_pred             HHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCHHHH---
T ss_conf             731938889989998752801335787663675--6479999999999999878676----5678876414411356---


Q ss_pred             HHCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             000000000001--245777654332235543599999995389854--7888999999986998999999998
Q gi|254780592|r  162 ERALELSPNESS--IVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS--RIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       162 ~~~~~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                          ..+..+..  +...++.+--++|+.++|+..++...+-.|-.+  .+..||-..+.+..-+.+-..++.+
T Consensus       267 ----~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak  336 (556)
T KOG3807         267 ----LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK  336 (556)
T ss_pred             ----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----6145615688899999999876249999999998764052899988889999999998988899999975


No 283
>KOG2114 consensus
Probab=75.82  E-value=4.6  Score=18.07  Aligned_cols=61  Identities=13%  Similarity=-0.015  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             311799999984-201999999999999957578-79999999999874100124466655663
Q gi|254780592|r   37 SIPDPESLENMN-HEQLLEVTSTIGLQYQSHTKN-KMIGIVYADVLRRVGRTAQALAVMRQVAI   98 (271)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~P~~-~~~~~~~a~~l~~~g~~~~A~~~~~~al~   98 (271)
                      ..+.....+.+- +.-|.-|+...++. ..+|+. .+.+..+|.-++..|++++|...|-+.+.
T Consensus       334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~  396 (933)
T KOG2114         334 EKDLETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG  396 (933)
T ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             165888999999764179999999863-898789999999987887744777889999998706


No 284
>pfam10345 Cohesin_load Cohesin loading factor. Cohesin_load is a common cohesin loading factor protein that is conserved in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes but dispensable in G2 when cohesion has been established. It is referred to as both Ssl3, in pombe, and Scc4, in S.cerevisiae. It complexes with Mis4.
Probab=74.87  E-value=4.8  Score=17.92  Aligned_cols=65  Identities=14%  Similarity=0.156  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC---CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             7765433223554359999999538---985------4788899999998699899999999862917286659
Q gi|254780592|r  178 IAMSYLLMGDLKTAEEKLRFASQMI---GAD------SRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNI  242 (271)
Q Consensus       178 ~~~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~  242 (271)
                      ++....-.+++..|......+....   |+.      +-.++..|..+...|+.+.|...|.+...+.....++
T Consensus       362 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~gdl~~A~~~y~~~~~~~~~~~el  435 (593)
T pfam10345       362 IIWCAFVLGDWAKADRLNEFLRSLNQKLFEKLLKDLQPLLHYLEGLYAQSKGDLEAALYYYTKVAARKGTFREL  435 (593)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99999865379889988999998865043014565679999999999987167999999986043168973289


No 285
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.41  E-value=5  Score=17.85  Aligned_cols=27  Identities=11%  Similarity=0.121  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             013555532100000112588764221
Q gi|254780592|r  105 EVLAAYGKSLANAGYLDEGLDAINRAQ  131 (271)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~A~~~~~~a~  131 (271)
                      +++.+++..|.+.++.+.+.++..+.+
T Consensus       116 ea~~n~aeyY~qi~D~~ng~~~~~~~~  142 (412)
T COG5187         116 EADRNIAEYYCQIMDIQNGFEWMRRLM  142 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999889999998740664899999999


No 286
>PRK11627 hypothetical protein; Provisional
Probab=74.22  E-value=2.9  Score=19.29  Aligned_cols=23  Identities=35%  Similarity=0.703  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9899999999999998540368543
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      +|++  ++.+++++.|+||++.|..
T Consensus         2 mkk~--~~~l~a~~lL~gCas~p~~   24 (192)
T PRK11627          2 LKKI--LFPLVALFMLAGCATPPTT   24 (192)
T ss_pred             HHHH--HHHHHHHHHHHHHCCCCCE
T ss_conf             2879--9999999999860699763


No 287
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.59  E-value=5.2  Score=17.73  Aligned_cols=191  Identities=12%  Similarity=0.033  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHCCHHHHH-------------------H
Q ss_conf             7999999842019999999999999575--------787999999999987410012446-------------------6
Q gi|254780592|r   40 DPESLENMNHEQLLEVTSTIGLQYQSHT--------KNKMIGIVYADVLRRVGRTAQALA-------------------V   92 (271)
Q Consensus        40 ~~~~~~~~~~~~~~~A~~~~~~al~~~P--------~~~~~~~~~a~~l~~~g~~~~A~~-------------------~   92 (271)
                      +..+....+..|+++|+..|.+.+.+.-        ....+...++.+|...|++..--.                   +
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99998764044599999999999657777126566478889999998997167734288887743899997340568999


Q ss_pred             HHHHHHCCCCCCHHH---------------------------HHHHHHHHHHCCHHHHHHHHHHHH------HHHCHHHH
Q ss_conf             655663275210013---------------------------555532100000112588764221------10000233
Q gi|254780592|r   93 MRQVAILYPEDQEVL---------------------------AAYGKSLANAGYLDEGLDAINRAQ------RPDIPDWQ  139 (271)
Q Consensus        93 ~~~al~~~p~~~~~~---------------------------~~~~~~~~~~g~~~~A~~~~~~a~------~~~p~~~~  139 (271)
                      .+.+++..|..+..+                           ..+...+...|.|.+|+.......      ...+....
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99999966789854788999999999999888889999999999999998135277799988799999986167642010


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHH
Q ss_conf             5669999999742111110000000000000--001-----245777654332235543599999995389---854788
Q gi|254780592|r  140 LISAKGSVLAQMGKHSEALIEYERALELSPN--ESS-----IVSNIAMSYLLMGDLKTAEEKLRFASQMIG---ADSRIR  209 (271)
Q Consensus       140 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~-----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~  209 (271)
                      .+..-..+|....+..++...+..+......  .|+     .-..-|.......+|..|-.+|-++++-..   .+..+.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             12566889999971024355778999885114788888878888636212045551058999999982402342429999


Q ss_pred             HHHHHH---HHHCCCHHHHHHHHH
Q ss_conf             899999---998699899999999
Q gi|254780592|r  210 QNLALV---VGLQGRMKEAYSIAS  230 (271)
Q Consensus       210 ~~La~~---~~~~g~~~eA~~~~~  230 (271)
                      ..|-.+   -...++.+|-..+++
T Consensus       247 ~sLkYmlLSkIMlN~~~evk~vl~  270 (421)
T COG5159         247 VSLKYMLLSKIMLNRREEVKAVLR  270 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999854999999981


No 288
>KOG4279 consensus
Probab=73.59  E-value=5.2  Score=17.72  Aligned_cols=117  Identities=16%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHH-CHHH
Q ss_conf             87999999999987410012446665566327521------0013555532100---000112588764221100-0023
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED------QEVLAAYGKSLAN---AGYLDEGLDAINRAQRPD-IPDW  138 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~-p~~~  138 (271)
                      .++.-.++-..|+...+|+.-+.+.+.+.. -|+.      ..+.+.++.++-+   -|+-++|+...-..++.. |-.+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279         200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCHHHHHCCCCEEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             788999988642130105889999999985-7205545416844798641111567986188899988898874589788


Q ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             356699999997---------4211111000000000000000124577765433223
Q gi|254780592|r  139 QLISAKGSVLAQ---------MGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGD  187 (271)
Q Consensus       139 ~~~~~lg~~~~~---------~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~  187 (271)
                      +.+..-|.+|..         .+..+.|+..|+++.+..|..... .|++.++...|.
T Consensus       279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~  335 (1226)
T KOG4279         279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGE  335 (1226)
T ss_pred             CEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCC-CCHHHHHHHHHH
T ss_conf             625450135454543168765466788899999876169104226-029999997313


No 289
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.52  E-value=5.2  Score=17.71  Aligned_cols=127  Identities=16%  Similarity=0.047  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             99999999998741001244666556632752100135555321000001125887642211000023356699999997
Q gi|254780592|r   71 MIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQ  150 (271)
Q Consensus        71 ~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~  150 (271)
                      .+.-.++......|..-..+...+    .+|....+|..+|.+....|+++.+....+.+.-.||-.+.....+..--.-
T Consensus        46 K~rr~L~~~~~dlg~kl~~ls~~e----~h~gl~n~~~Klgkv~q~vgD~~~~qat~e~~TLgD~L~~~~~day~vKEtL  121 (230)
T cd07625          46 KARKQLSLEEADFGQKLIQLSVEE----THHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEAL  121 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             999998788899998987524322----6874678999999999996019999999878886142999874089999999


Q ss_pred             HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             4211111000000000-000000124577765433223554359999999538
Q gi|254780592|r  151 MGKHSEALIEYERALE-LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMI  202 (271)
Q Consensus       151 ~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  202 (271)
                      .+++- -+.-+.++-. .......+-...+..-+.--+.|+|+..++.|....
T Consensus       122 TNRh~-lmREL~qAq~~t~sK~~~A~rlK~ss~i~p~KVDEAi~~LeeA~~~E  173 (230)
T cd07625         122 TNRHL-LMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHE  173 (230)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98899-99999999999999999999872567898777999999999999999


No 290
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=72.41  E-value=3.2  Score=18.98  Aligned_cols=19  Identities=21%  Similarity=0.391  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999998540368543
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~   36 (271)
                      .++++++++++||++.|..
T Consensus         6 ~~l~~~~llLsgCat~p~~   24 (203)
T PRK00022          6 RLLPLAALLLAGCASLPPP   24 (203)
T ss_pred             HHHHHHHHHHHHCCCCCCC
T ss_conf             9999999998661489998


No 291
>pfam11359 gpUL132 Glycoprotein UL132. Glycoprotein UL132 is a low-abundance structural component of Human cytomegalovirus (HCMV). The function of this protein is not fully understood.
Probab=70.16  E-value=2.5  Score=19.70  Aligned_cols=32  Identities=31%  Similarity=0.692  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             27875699999899999999999998540368543
Q gi|254780592|r    2 IILFCPVILFLKKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus         2 ~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      ||+||..--   .|.+.++++.+.+.++|...|..
T Consensus        53 Ii~Ycv~g~---sils~llVl~a~ly~sc~~r~gr   84 (235)
T pfam11359        53 IIIYCVSGV---SILSFLLVLVAVLYSSCHTRPGR   84 (235)
T ss_pred             HHEEEECCH---HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             311341026---99999999998777766417886


No 292
>pfam06957 COPI_C Coatomer (COPI) alpha subunit C-terminus. This family represents the C-terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit. Coatomer (COPI) is a large cytosolic protein complex which forms a coat around vesicles budding from the Golgi apparatus. Such coatomer-coated vesicles have been proposed to play a role in many distinct steps of intracellular transport. Note that many family members also contain the pfam04053 domain.
Probab=69.49  E-value=6.4  Score=17.16  Aligned_cols=24  Identities=4%  Similarity=-0.051  Sum_probs=18.5

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             999998420199999999999995
Q gi|254780592|r   42 ESLENMNHEQLLEVTSTIGLQYQS   65 (271)
Q Consensus        42 ~~~~~~~~~~~~~A~~~~~~al~~   65 (271)
                      .+.+|...|.|+.|...+.+.+-.
T Consensus       123 laadHvAAGsFesAm~LLnrQvGi  146 (421)
T pfam06957       123 LAADHVAAGSFETAMRLLHDQLGV  146 (421)
T ss_pred             CHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf             678888617799999999986484


No 293
>pfam07720 TPR_3 Tetratricopeptide repeat. This Pfam entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones.
Probab=68.49  E-value=5  Score=17.84  Aligned_cols=25  Identities=20%  Similarity=0.095  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9999999987410012446665566
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVA   97 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al   97 (271)
                      ++.+|-.+...|++++|..++.-+.
T Consensus         4 l~~~Aa~~~~k~ky~~A~~~y~~l~   28 (34)
T pfam07720         4 LYSLAAVFYLKGKYQEAEHLYALLA   28 (34)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9998999987021347999999999


No 294
>KOG1463 consensus
Probab=68.07  E-value=6.9  Score=16.97  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=15.2

Q ss_pred             HHHCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHCCCCC
Q ss_conf             9953898547888999999--986998999999998629172
Q gi|254780592|r  198 ASQMIGADSRIRQNLALVV--GLQGRMKEAYSIASQELSPEE  237 (271)
Q Consensus       198 al~~~p~~~~~~~~La~~~--~~~g~~~eA~~~~~~~L~~~~  237 (271)
                      +++....+.++....|.++  ..+..|..|...|+..|..+|
T Consensus       277 ~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463         277 ALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf             886047335999999998637868999999999689871284


No 295
>pfam04190 DUF410 Protein of unknown function (DUF410). This family of proteins is from Caenorhabditis elegans and has no known function. The protein has some GO references indicating that the protein has a positive regulation of growth rate and is involved in nematode larval development.
Probab=67.80  E-value=7  Score=16.94  Aligned_cols=26  Identities=12%  Similarity=0.069  Sum_probs=12.2

Q ss_pred             CCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             78799999999998741001244666
Q gi|254780592|r   68 KNKMIGIVYADVLRRVGRTAQALAVM   93 (271)
Q Consensus        68 ~~~~~~~~~a~~l~~~g~~~~A~~~~   93 (271)
                      .+|+.+..+|..+.+.|++.+|..+|
T Consensus        88 Gdp~LH~~ig~~~~~e~~~~~Ae~Hf  113 (260)
T pfam04190        88 GDPALHTLIAKKLVKEDNVESAENHF  113 (260)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999999998758889998885


No 296
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=67.22  E-value=5.4  Score=17.62  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999998540368543
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      .+.++++++++++++||+++...
T Consensus         3 ~~~~~~~~~~~~~l~~C~~~~~~   25 (289)
T TIGR03659         3 ILSLILLALLSLGLTGCSSSKAE   25 (289)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             29999999999998432899877


No 297
>KOG0687 consensus
Probab=66.45  E-value=7.4  Score=16.78  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHCCCC------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHC----C
Q ss_conf             99999999957578------799999999998741001244666556632752------1001355553210000----0
Q gi|254780592|r   56 TSTIGLQYQSHTKN------KMIGIVYADVLRRVGRTAQALAVMRQVAILYPE------DQEVLAAYGKSLANAG----Y  119 (271)
Q Consensus        56 ~~~~~~al~~~P~~------~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g----~  119 (271)
                      ++.++..++..-+|      .+++++.|+-|-+.|+.+.|.+.+.+..+..-.      -......+|..|....    .
T Consensus        84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~  163 (393)
T KOG0687          84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES  163 (393)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99999999999873122789999999999999860387799999999887764053035688888778862108899988


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             112588764221100002335669999999742111110000000000000
Q gi|254780592|r  120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN  170 (271)
Q Consensus       120 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~  170 (271)
                      .++|...+++.-..+..+ ..-...|.......++.+|...|..++.....
T Consensus       164 iekak~liE~GgDWeRrN-RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687         164 IEKAKSLIEEGGDWERRN-RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999899998278866665-68898889999997378899999987045451


No 298
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=66.28  E-value=7.5  Score=16.76  Aligned_cols=62  Identities=16%  Similarity=0.061  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             01245777654332235543599999995389854---788899999998699899999999862
Q gi|254780592|r  172 SSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS---RIRQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       172 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      .......+......|..+.|+..++..+...++..   ..+..++.++...|+++-|...++...
T Consensus       213 ~~~~~~eA~~l~~~~gl~~Al~~L~~~l~~~~s~R~rf~~rL~~ArL~~~~g~~~lA~~~l~~L~  277 (301)
T TIGR03362       213 WEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALD  277 (301)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             89999999999974799999999997532489979999999999999998698799999999999


No 299
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=66.16  E-value=5.4  Score=17.60  Aligned_cols=29  Identities=14%  Similarity=0.234  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             9989999999999999854036854331179
Q gi|254780592|r   11 FLKKIKCIVFLIPLLLFSSCHLNPRISIPDP   41 (271)
Q Consensus        11 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   41 (271)
                      +++++  ++.++.++.++||++.+....+..
T Consensus         3 ~~~~l--v~~al~v~~LaaCSs~~~~~~q~~   31 (342)
T COG3317           3 SSAKL--VLGALLVLLLAACSSDSEYKRQVS   31 (342)
T ss_pred             HHHHH--HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             17889--999999998741468850003344


No 300
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=65.87  E-value=7.6  Score=16.72  Aligned_cols=14  Identities=0%  Similarity=-0.078  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999999957
Q gi|254780592|r   53 LEVTSTIGLQYQSH   66 (271)
Q Consensus        53 ~~A~~~~~~al~~~   66 (271)
                      ..|++...+|++.|
T Consensus         4 ~kAi~lv~~Av~~D   17 (75)
T cd02684           4 EKAIALVVQAVKKD   17 (75)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             88999999999988


No 301
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=65.26  E-value=7.1  Score=16.87  Aligned_cols=25  Identities=20%  Similarity=0.285  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9998999999999999985403685
Q gi|254780592|r   10 LFLKKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        10 ~f~~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      |-+|.+.++..++.++.++||++..
T Consensus         3 ~~~k~~~~~~~l~~~l~l~gCg~~~   27 (271)
T PRK11063          3 FKFKTFAAVGALIGSLALVGCGQDE   27 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             0299999999999999750058985


No 302
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.10  E-value=7.9  Score=16.62  Aligned_cols=28  Identities=11%  Similarity=0.142  Sum_probs=15.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             1999999999999957578799999999
Q gi|254780592|r   51 QLLEVTSTIGLQYQSHTKNKMIGIVYAD   78 (271)
Q Consensus        51 ~~~~A~~~~~~al~~~P~~~~~~~~~a~   78 (271)
                      +.+.|...|++++...|.++..|..++.
T Consensus         2 ~~~~~r~iyer~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             2889999999999977147999999987


No 303
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=64.83  E-value=7.1  Score=16.88  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             989999999999999854036854
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~   35 (271)
                      +|.+.+..++.++++++||++.|.
T Consensus         6 ~~r~~~~~~l~~~~lLagC~~~p~   29 (488)
T PRK09915          6 LSRLLLCSILGSTTLISGCALVRK   29 (488)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             769999999999999752668999


No 304
>KOG4151 consensus
Probab=64.59  E-value=8  Score=16.56  Aligned_cols=95  Identities=8%  Similarity=0.022  Sum_probs=67.9

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf             99842019999999999999575----7879999999999874--10012446665566327521001355553210000
Q gi|254780592|r   45 ENMNHEQLLEVTSTIGLQYQSHT----KNKMIGIVYADVLRRV--GRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAG  118 (271)
Q Consensus        45 ~~~~~~~~~~A~~~~~~al~~~P----~~~~~~~~~a~~l~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  118 (271)
                      -..+.+++.++..-|..++..-|    .....+.+.+.++.+.  |++..++.-..-+....|....++...+.+|...+
T Consensus        62 ~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~  141 (748)
T KOG4151          62 KLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALN  141 (748)
T ss_pred             HHHHHHHHHCCCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             77665404135354412310045532035667778999986248543022237424565516317787734556778787


Q ss_pred             CHHHHHHHHHHHHHHHCHHHH
Q ss_conf             011258876422110000233
Q gi|254780592|r  119 YLDEGLDAINRAQRPDIPDWQ  139 (271)
Q Consensus       119 ~~~~A~~~~~~a~~~~p~~~~  139 (271)
                      +++-|.+.+.-....+|....
T Consensus       142 k~d~a~rdl~i~~~~~p~~~~  162 (748)
T KOG4151         142 KLDLAVRDLRIVEKMDPSNVS  162 (748)
T ss_pred             HHHHHHHHHHHHHCCCCCCCH
T ss_conf             788899999987347877521


No 305
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=64.27  E-value=3.7  Score=18.60  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999999999998540368
Q gi|254780592|r   10 LFLKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        10 ~f~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      |-+|++..+.++.+.+.|+||+..
T Consensus         1 m~~kk~~~~~~~~~~l~lsGC~a~   24 (243)
T PRK13731          1 MKTKKLMMVALVSSTLALSGCGAM   24 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             933775799999999997156876


No 306
>KOG2758 consensus
Probab=63.86  E-value=8.3  Score=16.47  Aligned_cols=176  Identities=11%  Similarity=0.002  Sum_probs=93.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--CCCHHHHHHHHH--HHHHCCHHHHHHHHHHHHH
Q ss_conf             999999995757879999999999874100124466655663275--210013555532--1000001125887642211
Q gi|254780592|r   57 STIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYP--EDQEVLAAYGKS--LANAGYLDEGLDAINRAQR  132 (271)
Q Consensus        57 ~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~--~~~~g~~~~A~~~~~~a~~  132 (271)
                      ..+++-..-.|+..++++.+|...+.-|++..|-.++-....+.+  +....-..+|..  ..-+.+|+.|++.+.+..+
T Consensus       116 ~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre  195 (432)
T KOG2758         116 QHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE  195 (432)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998629988999999999999875168531899999999963886652699999999999998648889999999999


Q ss_pred             HH---CHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf             00---002--3356699999----9974211111000000000--------0000001245777654332-235543599
Q gi|254780592|r  133 PD---IPD--WQLISAKGSV----LAQMGKHSEALIEYERALE--------LSPNESSIVSNIAMSYLLM-GDLKTAEEK  194 (271)
Q Consensus       133 ~~---p~~--~~~~~~lg~~----~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~-g~~~~A~~~  194 (271)
                      ..   +-.  +.....+..+    +.-.=++.++.+..-...-        +....+-.+..++.+.+.. .+....++.
T Consensus       196 ~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkd  275 (432)
T KOG2758         196 YIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKD  275 (432)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             87036545489998888898878777650588705689999834777788998627899999999851033866788999


Q ss_pred             HHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             999995389-85478889999999869989999999986
Q gi|254780592|r  195 LRFASQMIG-ADSRIRQNLALVVGLQGRMKEAYSIASQE  232 (271)
Q Consensus       195 ~~~al~~~p-~~~~~~~~La~~~~~~g~~~eA~~~~~~~  232 (271)
                      +-+.++... +..+.....-.++...-+++.|...++.+
T Consensus       276 lvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eC  314 (432)
T KOG2758         276 LVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLREC  314 (432)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999998750344782899998895011627899999998


No 307
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.20  E-value=8.5  Score=16.40  Aligned_cols=13  Identities=23%  Similarity=0.473  Sum_probs=4.3

Q ss_pred             HCCHHHHHHHHHH
Q ss_conf             1001244666556
Q gi|254780592|r   84 GRTAQALAVMRQV   96 (271)
Q Consensus        84 g~~~~A~~~~~~a   96 (271)
                      |++++|+.+|.++
T Consensus        22 g~y~eA~~~Y~~a   34 (77)
T smart00745       22 GDYEEALELYKKA   34 (77)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             8899999999999


No 308
>PRK11443 hypothetical protein; Provisional
Probab=62.69  E-value=5  Score=17.84  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999999998540368543311799
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRISIPDPE   42 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~   42 (271)
                      .+++.+++++++||+.+|.+..+..+
T Consensus         3 ~~~~~~~~lll~GCq~~p~t~ap~~~   28 (120)
T PRK11443          3 KFIAPLLALLVSGCQIDPYTHAPTLT   28 (120)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             58999999999666789624686556


No 309
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.22  E-value=8.2  Score=16.52  Aligned_cols=14  Identities=43%  Similarity=0.415  Sum_probs=5.4

Q ss_pred             HCCHHHHHHHHHHH
Q ss_conf             10012446665566
Q gi|254780592|r   84 GRTAQALAVMRQVA   97 (271)
Q Consensus        84 g~~~~A~~~~~~al   97 (271)
                      |+.++|+.+|++++
T Consensus        22 g~~~~Al~~Y~~gi   35 (79)
T cd02679          22 GDKEQALAHYRKGL   35 (79)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             89999999999999


No 310
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=62.10  E-value=8.9  Score=16.28  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9899999999999998540368543
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      -+..+.++.+...++|+||+..|.+
T Consensus        13 ~~t~k~L~~laa~~lLagC~a~~~t   37 (204)
T COG3056          13 NMTKKILFPLAAIFLLAGCAAPPTT   37 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             8899999999999999753799750


No 311
>pfam10579 Rapsyn_N Rapsyn N-terminal myristoylation and linker region. Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane.
Probab=61.52  E-value=9.2  Score=16.21  Aligned_cols=20  Identities=0%  Similarity=-0.167  Sum_probs=7.8

Q ss_pred             HHHHCCHHHHHHHHHHHHHH
Q ss_conf             98420199999999999995
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQS   65 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~   65 (271)
                      .+++.+.+.|+..+.+++++
T Consensus        16 LY~~~~~~~Av~~W~~~L~k   35 (80)
T pfam10579        16 LYQSNNTEKALEIWRKVLEK   35 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99971289999999999987


No 312
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=61.39  E-value=9.2  Score=16.20  Aligned_cols=51  Identities=18%  Similarity=0.185  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999999985403685------4331179999998420199999999999995757
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNP------RISIPDPESLENMNHEQLLEVTSTIGLQYQSHTK   68 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~   68 (271)
                      +++++.++++.||+...      ..+..........|..-...-...+++.++.|+.
T Consensus         5 i~~i~~~~~~~sC~~~e~RkPi~~~s~~f~~~S~~rNK~l~a~Ee~~I~~~i~~ds~   61 (177)
T TIGR03516         5 IAVILLLLLLLGCKTPEARRPISRSSGTTIKLSAERNKKLIAAEEAAIKRIISADSI   61 (177)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             478989899872699646688665875149999999899999999999999986985


No 313
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=61.19  E-value=9.3  Score=16.18  Aligned_cols=25  Identities=24%  Similarity=0.200  Sum_probs=15.4

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHCCCCC
Q ss_conf             99899999-99999999854036854
Q gi|254780592|r   11 FLKKIKCI-VFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        11 f~~~~~~~-~~l~~~~~~~~~~~~~~   35 (271)
                      ++|++.+. +.+++++.++||++++.
T Consensus         4 ~MKK~~l~~~~~~~~l~LaaCss~~~   29 (298)
T PRK04405          4 KMKKWALAAASAGLLLSLAGCSSNNK   29 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             78999999999999999987179997


No 314
>PRK10449 heat-inducible protein; Provisional
Probab=60.98  E-value=7.1  Score=16.87  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             98999999999999985403685433
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      +|++  +.+++..+.++||++++...
T Consensus         1 MKk~--l~l~~~~llLagC~s~~~~~   24 (140)
T PRK10449          1 MKKV--VALVALSLLMAGCVSSGKIS   24 (140)
T ss_pred             CCHH--HHHHHHHHHHHHCCCCCCCC
T ss_conf             9034--99999999997523899887


No 315
>PRK12450 foldase protein PrsA; Reviewed
Probab=60.28  E-value=9.6  Score=16.08  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9899999999999998540368
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      -|-+..++.+.+++.|++|++.
T Consensus         5 KK~~~~~~~~~svl~LaAC~s~   26 (309)
T PRK12450          5 NKLITGVVTLATVVTLSACQSS   26 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999999860589


No 316
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=60.15  E-value=1.7  Score=20.70  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999854036854331
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNPRISI   38 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~~   38 (271)
                      ++..+++++++++||++.+....
T Consensus         2 k~~~~l~~~~ll~gcq~~~~~~~   24 (449)
T PRK10783          2 KAKAILLASVLLVGCQSSKNDAQ   24 (449)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             18999999999972557888888


No 317
>pfam07273 DUF1439 Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.
Probab=59.68  E-value=9.9  Score=16.01  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             99999998540368543311799999984
Q gi|254780592|r   20 FLIPLLLFSSCHLNPRISIPDPESLENMN   48 (271)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (271)
                      ++++++.++||.+....+....+..++++
T Consensus         8 ~~~l~~~LsgC~~ls~ysISE~Ein~yL~   36 (177)
T pfam07273         8 ILLLVLLLSGCASLSQYSISEAEINQYLQ   36 (177)
T ss_pred             HHHHHHHHHCCCCCCCEEECHHHHHHHHH
T ss_conf             99999997155756625266999999998


No 318
>pfam07721 TPR_4 Tetratricopeptide repeat. This Pfam entry includes tetratricopeptide-like repeats not detected by the pfam00515, pfam07719 and pfam07720 models.
Probab=59.63  E-value=8.7  Score=16.35  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHH
Q ss_conf             889999999869989999999
Q gi|254780592|r  209 RQNLALVVGLQGRMKEAYSIA  229 (271)
Q Consensus       209 ~~~La~~~~~~g~~~eA~~~~  229 (271)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~l   24 (26)
T pfam07721         4 LLALARALLALGDLDEARALL   24 (26)
T ss_pred             HHHHHHHHHHHCCHHHHHHHH
T ss_conf             999999999806778899886


No 319
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.24  E-value=9.7  Score=16.07  Aligned_cols=14  Identities=29%  Similarity=0.356  Sum_probs=4.6

Q ss_pred             HHCCHHHHHHHHHH
Q ss_conf             41001244666556
Q gi|254780592|r   83 VGRTAQALAVMRQV   96 (271)
Q Consensus        83 ~g~~~~A~~~~~~a   96 (271)
                      .|++.+|+.+|..+
T Consensus        19 ~~~y~eAl~~Y~~g   32 (77)
T cd02683          19 EGRFQEALVCYQEG   32 (77)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             15699999999999


No 320
>pfam10516 SHNi-TPR SHNi-TPR. SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.
Probab=58.93  E-value=6.8  Score=17.01  Aligned_cols=25  Identities=12%  Similarity=-0.032  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             8899999998699899999999862
Q gi|254780592|r  209 RQNLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       209 ~~~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      +..||.+-....+|++|..-++++|
T Consensus         4 ~~~LgEislE~e~F~qA~~D~~~~L   28 (38)
T pfam10516         4 YDLLGEISLENENFPQAVEDLRKAL   28 (38)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             8877786540156077899999999


No 321
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=58.89  E-value=10  Score=15.97  Aligned_cols=18  Identities=28%  Similarity=0.355  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHCCCCC
Q ss_conf             999999999854036854
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~   35 (271)
                      .+++.++++++||++.|+
T Consensus        10 ~~~~~~~~ll~GCa~~~~   27 (230)
T PRK12700         10 PVCAALLALAAGCAMIPP   27 (230)
T ss_pred             HHHHHHHHHHHCCCCCCC
T ss_conf             999999999744468999


No 322
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=58.67  E-value=2.9  Score=19.26  Aligned_cols=22  Identities=41%  Similarity=0.541  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      |++..+++++..+++++|+.+.
T Consensus         2 kki~~~~i~~~~~~L~aCQaNy   23 (46)
T pfam02402         2 KKILFIGILLLTVLLSACQANY   23 (46)
T ss_pred             CEEEEHHHHHHHHHHHHHHHHH
T ss_conf             2420139999999999855504


No 323
>pfam04212 MIT MIT (microtubule interacting and transport) domain. The MIT domain forms an asymmetric three-helix bundle and binds ESCRT-III (endosomal sorting complexes required for transport) substrates.
Probab=58.65  E-value=10  Score=15.91  Aligned_cols=11  Identities=27%  Similarity=0.450  Sum_probs=3.5

Q ss_pred             CCHHHHHHHHH
Q ss_conf             99899999999
Q gi|254780592|r  220 GRMKEAYSIAS  230 (271)
Q Consensus       220 g~~~eA~~~~~  230 (271)
                      |++++|..+|.
T Consensus        19 g~y~~A~~~Y~   29 (69)
T pfam04212        19 GNYEEALELYK   29 (69)
T ss_pred             CCHHHHHHHHH
T ss_conf             99999999999


No 324
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=58.59  E-value=6.6  Score=17.08  Aligned_cols=21  Identities=14%  Similarity=0.260  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999999998540368
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      |+...+.+++++++++||+..
T Consensus         4 k~~~li~ll~~~~lL~gC~~~   24 (385)
T PRK09859          4 RRKLLIPLLFCGAMLTACDDK   24 (385)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             067899999999999537999


No 325
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=58.57  E-value=8.4  Score=16.45  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9899999999999998540368
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      -|.|.+++.+++++.++||+..
T Consensus         3 kK~i~~~~~~~svl~LaaC~~~   24 (285)
T PRK03002          3 GKHIFIITALISILMLSACGQK   24 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             0189999999999999984579


No 326
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=58.45  E-value=7.9  Score=16.61  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      |+..+.+..++++.+++|+++.
T Consensus         2 KK~~la~~~~svl~LaaC~~~~   23 (287)
T PRK03095          2 KKAMLALAATSVIALSACGTSS   23 (287)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCC
T ss_conf             0789999999999998516899


No 327
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=58.36  E-value=10  Score=15.98  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899999999999998540368543
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      ++.+..++...++.++||.+.|..
T Consensus         6 ~~~~~~l~~~laflLsgC~tiPk~   29 (191)
T COG3065           6 NMKKGALIGTLAFLLSGCVTIPKA   29 (191)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             647999999999997630357831


No 328
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=58.24  E-value=7.7  Score=16.69  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8999999999999985403685433
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      +.+.+..++..++.++||.++|.+.
T Consensus         4 r~~lia~~~a~~l~lsgC~t~p~tg   28 (219)
T PRK10510          4 RVYLIAAIVSGALAVSGCTTNPYTG   28 (219)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             6899999999998741356789876


No 329
>TIGR02722 lp_ uncharacterized lipoprotein; InterPro: IPR014094   Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby..
Probab=58.14  E-value=8.6  Score=16.39  Aligned_cols=18  Identities=28%  Similarity=0.360  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             999999999998540368
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~   33 (271)
                      .++++++++++|+||++.
T Consensus         5 ~l~~~~~~Al~L~GC~~~   22 (215)
T TIGR02722         5 ILIFVALLALLLSGCVSQ   22 (215)
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             789999999998546887


No 330
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PMID:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=57.98  E-value=7.3  Score=16.82  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999985403685433
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~   37 (271)
                      .++++..++++||++.++..
T Consensus         4 ~~~l~~~lllagC~s~~~~~   23 (146)
T TIGR03352         4 AVLLAACLLLAGCSSAPPPK   23 (146)
T ss_pred             EHHHHHHHHHHHCCCCCCCC
T ss_conf             55899999985325999988


No 331
>KOG2581 consensus
Probab=56.43  E-value=11  Score=15.68  Aligned_cols=61  Identities=8%  Similarity=-0.150  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999742111110000000000--00--00012457776543322355435999999953898
Q gi|254780592|r  144 KGSVLAQMGKHSEALIEYERALEL--SP--NESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA  204 (271)
Q Consensus       144 lg~~~~~~~~~~~A~~~~~~~~~~--~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  204 (271)
                      +-.+|...+.++.|.....+..--  ..  ......+.+|.+..-+++|..|.++|-+|+...|+
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581         215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf             99998616788789877650458654532799999999876888740177899999999984852


No 332
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=56.05  E-value=7.7  Score=16.66  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             989999999999999854036854
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~   35 (271)
                      +++....+|.+.++.++||++.+.
T Consensus         6 ~~~~~~~~~al~~l~LsGCa~~~~   29 (227)
T PRK12697          6 VRRPGAAACALAALALAGCAQIPR   29 (227)
T ss_pred             HCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             414038999999999726567899


No 333
>pfam05590 DUF769 Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.
Probab=55.54  E-value=4.3  Score=18.23  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999999985403685433
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      -.+.-+|...+.++||++.|++.
T Consensus         6 rL~~SllaAslLLagCSsgPpID   28 (279)
T pfam05590         6 RLSCSLLAASLLLAGCSSGPPID   28 (279)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             40169999999972378899866


No 334
>PRK11023 hypothetical protein; Provisional
Probab=55.47  E-value=6.6  Score=17.09  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC
Q ss_conf             989999999999999854036
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHL   32 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~   32 (271)
                      ||.++.+.++++++.++||..
T Consensus         1 mk~~~~l~~l~~~~~L~GC~~   21 (191)
T PRK11023          1 MKALSPLAVLISALLLQGCVA   21 (191)
T ss_pred             CCHHHHHHHHHHHHHHCCCHH
T ss_conf             944889999999999726823


No 335
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=55.43  E-value=11  Score=15.62  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             89999999999999854036854331
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRISI   38 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~   38 (271)
                      +||  +++.+.++.++||.++.+...
T Consensus         2 rK~--~~~all~laL~gCAtt~~YGN   25 (156)
T PRK13883          2 RKI--LSLALLALALGGCATTSQYGN   25 (156)
T ss_pred             HHH--HHHHHHHHHHHCCCCCCCCCC
T ss_conf             268--999999999703313578877


No 336
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=54.79  E-value=9.7  Score=16.07  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999985403685
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      .+...++|+.+++++||++..
T Consensus         3 r~~~~~~~la~~lL~GC~~~~   23 (230)
T PRK12701          3 RLNIAVSCLATALLFGCEALH   23 (230)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             589999999999975566889


No 337
>pfam07219 HemY_N HemY protein N-terminus. This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Probab=54.52  E-value=12  Score=15.49  Aligned_cols=29  Identities=21%  Similarity=0.012  Sum_probs=12.6

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf             99999874100124466655663275210
Q gi|254780592|r   76 YADVLRRVGRTAQALAVMRQVAILYPEDQ  104 (271)
Q Consensus        76 ~a~~l~~~g~~~~A~~~~~~al~~~p~~~  104 (271)
                      .|.+-...|++++|...+.++.+..+.+.
T Consensus        91 ~Gl~a~~~Gd~~~A~k~~~ka~k~~~~p~  119 (134)
T pfam07219        91 EGLLALAEGDWALAERLARKAAELEDQPP  119 (134)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf             99999978999999999999876379935


No 338
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=54.36  E-value=7.7  Score=16.69  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999985403685433
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      +.+.+++++++++||+..+...
T Consensus         4 ~i~~il~~~llL~GCs~mn~~~   25 (304)
T pfam07901         4 LIKLILIATLLLSGCSTTNNES   25 (304)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCC
T ss_conf             8999999999971334455542


No 339
>TIGR00752 slp outer membrane lipoprotein, Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane.
Probab=53.80  E-value=7.4  Score=16.77  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999999854036854331
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNPRISI   38 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~   38 (271)
                      .++.+++...++.|+||.+.|..-.
T Consensus         2 ~~~g~l~~~l~f~L~gC~~~P~~ik   26 (190)
T TIGR00752         2 VKKGLLITALAFLLTGCIAVPKAIK   26 (190)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             2014568889988753146742345


No 340
>KOG1497 consensus
Probab=53.16  E-value=13  Score=15.35  Aligned_cols=57  Identities=16%  Similarity=0.033  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             999999998741001244666556632752--------1001355553210000011258876422
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPE--------DQEVLAAYGKSLANAGYLDEGLDAINRA  130 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~a  130 (271)
                      ...+|.+|...+++..|-..+.- +.++..        .......+++.|...++..+|.....++
T Consensus       106 rl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa  170 (399)
T KOG1497         106 RLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA  170 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999999876469999998854-276654344125788999999999987158477899998887


No 341
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=52.80  E-value=13  Score=15.32  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      |-+..++.+.+++.|+||++..
T Consensus         4 Kl~~~~~~~~svl~LaaCs~~~   25 (310)
T PRK01326          4 KLIAGAVTLLSVATLAACSKTN   25 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999998716999


No 342
>PRK01622 OxaA-like protein precursor; Validated
Probab=51.52  E-value=13  Score=15.19  Aligned_cols=24  Identities=17%  Similarity=0.355  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899999999999998540368543
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      |.+.+..++..+++++||+.+++.
T Consensus         6 ~~~l~~~~~~~~~~lsgc~~~~~~   29 (266)
T PRK01622          6 RAVLISLSLLLVFVLSGCSNAAPI   29 (266)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             999999999999999546899998


No 343
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=51.07  E-value=11  Score=15.65  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999998540368543
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      +...++++.+++++||++.++.
T Consensus         4 ~~~~~~~~~~~~LsgCa~~~~~   25 (231)
T PRK00249          4 MLIALALLLLLLLSGCASIPPK   25 (231)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8999999999998753489998


No 344
>TIGR02269 TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269; InterPro: IPR011755   This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown..
Probab=49.98  E-value=11  Score=15.64  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             999999999854036854331179
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRISIPDP   41 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~   41 (271)
                      +++.+++++|.||+++.+.+.+..
T Consensus         2 l~~~lla~ll~GCa~~~~~~dP~~   25 (228)
T TIGR02269         2 LLLLLLALLLVGCASTAPKSDPPA   25 (228)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             579988999875205787787402


No 345
>pfam07079 DUF1347 Protein of unknown function (DUF1347). This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=49.25  E-value=15  Score=14.97  Aligned_cols=70  Identities=19%  Similarity=0.077  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             765433223554359999999538985478889999999869989999999986291728665999999998
Q gi|254780592|r  179 AMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILS  250 (271)
Q Consensus       179 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~  250 (271)
                      +..+..+|+|+.-.-+-- -+..-..++.++..+|+++...+++.||++++.. |.+....-+...-++++-
T Consensus       469 AeyLfa~gdY~kCy~YS~-WLtkvaPS~~~yrLlGLcL~enK~Y~EAwe~l~~-Lp~n~~~~dskvqKAl~l  538 (550)
T pfam07079       469 AEYLFAQGDYHKCYLYSL-WLTKVAPSPLAYRLLGLCLLENKEYLEAWEYLHS-LPLNERTYDSKVQKALLL  538 (550)
T ss_pred             HHHHHHCCCCCHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
T ss_conf             899975377004365698-8876189788999998888401658999999974-899864116899999999


No 346
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response .; GO: 0009847 spore germination, 0016020 membrane.
Probab=48.75  E-value=11  Score=15.81  Aligned_cols=21  Identities=29%  Similarity=0.684  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999985403685
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      ..+++++++++++|+||+..-
T Consensus         2 ~~~~~~~~~~~~lL~GCwd~~   22 (400)
T TIGR02887         2 KLKILLLILALLLLTGCWDKR   22 (400)
T ss_pred             HHHHHHHHHHHHHHCCCCCCH
T ss_conf             466789999999832665620


No 347
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.72  E-value=15  Score=14.83  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH---HHH-HHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             001125887642211000-02335669999999742---111-1100000000-00000001245777654332235543
Q gi|254780592|r  118 GYLDEGLDAINRAQRPDI-PDWQLISAKGSVLAQMG---KHS-EALIEYERAL-ELSPNESSIVSNIAMSYLLMGDLKTA  191 (271)
Q Consensus       118 g~~~~A~~~~~~a~~~~p-~~~~~~~~lg~~~~~~~---~~~-~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~g~~~~A  191 (271)
                      +-.+++...+.++..... .-......++.++..-.   +.+ ..+..+-.++ ...|+ +.+-.|.+.+.-..--...+
T Consensus       270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~ag  348 (415)
T COG4941         270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAG  348 (415)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEHHHHHHHHHHHHHHH
T ss_conf             88787899999999748998189999999998753335799859999999999984899-85751388999976557868


Q ss_pred             HHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             5999999953--8985478889999999869989999999986291728665999999998
Q gi|254780592|r  192 EEKLRFASQM--IGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIKSILS  250 (271)
Q Consensus       192 ~~~~~~al~~--~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~~~l~  250 (271)
                      +...+.....  -.++.-.+-.-|-.+..+|+.+||...|++++..........+++.-+.
T Consensus       349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~  409 (415)
T COG4941         349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD  409 (415)
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999875124355434220877789999818707789999999986688699999999998


No 348
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118   This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=47.43  E-value=9.8  Score=16.02  Aligned_cols=18  Identities=22%  Similarity=0.602  Sum_probs=10.3

Q ss_pred             HHHHHHH-HHHHHHHHHCC
Q ss_conf             9999999-99999854036
Q gi|254780592|r   15 IKCIVFL-IPLLLFSSCHL   32 (271)
Q Consensus        15 ~~~~~~l-~~~~~~~~~~~   32 (271)
                      +.+++.+ ++++.|+|||+
T Consensus         4 ~~~L~~~~~~~f~LtGCsa   22 (174)
T TIGR02747         4 LKVLLLLACVAFLLTGCSA   22 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             7899999999872002577


No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family; InterPro: IPR013348    YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis.
Probab=47.38  E-value=16  Score=14.79  Aligned_cols=94  Identities=18%  Similarity=0.015  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             66999999974211111000000000000000124577765433223554359999999538985478889999999869
Q gi|254780592|r  141 ISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQG  220 (271)
Q Consensus       141 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g  220 (271)
                      +..++.+-.....+++|--.-............+.......+.++|+|.+|....++.-..   .++.---+|++-.+.|
T Consensus         9 LAeiAL~gtG~HcH~EAn~IAdWL~~~~e~~E~v~LIrlsSLmN~G~Y~~Al~lg~~~~ta---yPdLepwlALce~rlG   85 (118)
T TIGR02508         9 LAEIALVGTGHHCHQEANTIADWLEETSESEEAVVLIRLSSLMNRGDYQEALQLGEELCTA---YPDLEPWLALCEWRLG   85 (118)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHH
T ss_conf             9999998459983678989999745899816999999986312755799999724336887---7787789999999987


Q ss_pred             CHH-HHHHHHHHHCCCCC
Q ss_conf             989-99999998629172
Q gi|254780592|r  221 RMK-EAYSIASQELSPEE  237 (271)
Q Consensus       221 ~~~-eA~~~~~~~L~~~~  237 (271)
                      -.+ .+.+..+=+-+.+|
T Consensus        86 l~~Al~~Rl~rLa~s~~p  103 (118)
T TIGR02508        86 LLSALEERLLRLAASGDP  103 (118)
T ss_pred             HHHHHHHHHHHHHCCCCH
T ss_conf             999999999987427985


No 350
>PRK10760 murein hydrolase B; Provisional
Probab=47.10  E-value=16  Score=14.77  Aligned_cols=20  Identities=20%  Similarity=0.590  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999985403685433
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~   37 (271)
                      +.++...+++++||+.|...
T Consensus         5 ~~~~~~~~~l~~css~p~~~   24 (357)
T PRK10760          5 VTLLPLFVLLAACSSKPKPT   24 (357)
T ss_pred             HHHHHHHHHHHHHCCCCCCC
T ss_conf             86899999999851899999


No 351
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=46.95  E-value=12  Score=15.45  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98999999999999985403685
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      ||++  ++++++++++++|.+..
T Consensus         1 Mkk~--~~~~~~~~~~~SCg~~~   21 (449)
T TIGR03525         1 MKKY--LVFAALVVLVYSCGSGD   21 (449)
T ss_pred             CCHH--HHHHHHHHHHHHCCCCC
T ss_conf             9124--89999999872105899


No 352
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=46.87  E-value=8.6  Score=16.37  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCHH
Q ss_conf             999999985403685433117
Q gi|254780592|r   20 FLIPLLLFSSCHLNPRISIPD   40 (271)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~   40 (271)
                      +.++++.|.||++.+......
T Consensus         7 ~~l~~~lLvGCsS~~~i~~~~   27 (123)
T COG5633           7 LSLALLLLVGCSSHQEILVND   27 (123)
T ss_pred             HHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999942047887752255


No 353
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=46.80  E-value=16  Score=14.74  Aligned_cols=20  Identities=15%  Similarity=0.227  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999985403685
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~   34 (271)
                      +..++++.+++.+++|+++.
T Consensus         7 ~~~~~~~~~~l~LaaC~s~~   26 (283)
T PRK02998          7 FIGTIISCVVLALSACGSSD   26 (283)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999998668998


No 354
>pfam12583 TPPII_N Tripeptidyl peptidase II N terminal. This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. The family is found in association with pfam00082. Tripeptidyl peptidase II (TPPII) is a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides.
Probab=46.59  E-value=16  Score=14.72  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHCCCCCCHHH
Q ss_conf             124466655663275210013
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVL  107 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~  107 (271)
                      +.|..+|+.++..+|++..++
T Consensus        87 E~AE~iY~ev~~~~P~hL~aH  107 (134)
T pfam12583        87 ENAEKIYNEVVAAHPKHLQAH  107 (134)
T ss_pred             HHHHHHHHHHHHHCCHHHHHH
T ss_conf             889999999998781159999


No 355
>pfam03304 Mlp Mlp lipoprotein family. The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species. This family were previously known as 2.9 lipoprotein genes. These surface expressed genes may represent new candidate vaccinogens for Lyme disease. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=46.42  E-value=9  Score=16.27  Aligned_cols=22  Identities=36%  Similarity=0.606  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      ++|+-+++++.++++.||-++.
T Consensus         1 MKIINilfclfll~Ln~Cnsnd   22 (150)
T pfam03304         1 MKIINILFCLFLLMLNGCNSND   22 (150)
T ss_pred             CCEEHHHHHHHHHHHCCCCCCC
T ss_conf             9431499999999982656786


No 356
>pfam00938 Lipoprotein_3 Lipoprotein. This family of lipoproteins is Mycoplasma specific.
Probab=46.32  E-value=16  Score=14.69  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHH----CCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99999999854036854331---17999999842----0199999999999995757879999
Q gi|254780592|r   19 VFLIPLLLFSSCHLNPRISI---PDPESLENMNH----EQLLEVTSTIGLQYQSHTKNKMIGI   74 (271)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~A~~~~~~al~~~P~~~~~~~   74 (271)
                      ++++++.++++|+.......   ...+....-+.    ++=...+..+++.++.||+...-.+
T Consensus         2 lfll~g~~LSACS~a~~~~~~~~~~~~~~~~sk~~el~e~KknlIt~LKksYe~np~~Tt~~L   64 (101)
T pfam00938         2 LFLLSGTLLSACSQADLRVLIKELTAQDYDVSKNIELSEGKKNLITSLKKSYESNPKKTTNLL   64 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             599995999997288899999885554777864010330088999999999715908899999


No 357
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=45.67  E-value=15  Score=14.90  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999998540368543
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~   36 (271)
                      .++++++++++||++.+..
T Consensus         4 ~~l~~~~l~L~gCa~~~~~   22 (224)
T PRK12698          4 YILLALALLLAGCSSTPKK   22 (224)
T ss_pred             HHHHHHHHHHHCCCCCCCC
T ss_conf             9999999998365688988


No 358
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.64  E-value=17  Score=14.63  Aligned_cols=51  Identities=24%  Similarity=0.111  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             457776543322355435999999953898547888999999986998999
Q gi|254780592|r  175 VSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEA  225 (271)
Q Consensus       175 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA  225 (271)
                      ...++.--..+|+|.-+.+.+.+++-.+|++..++...|-++.++|--.|.
T Consensus       455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~  505 (655)
T COG2015         455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES  505 (655)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999887546601899997467716976188998877389885002100


No 359
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=45.53  E-value=17  Score=14.62  Aligned_cols=21  Identities=10%  Similarity=0.333  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999999998540368
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      |...++++++++++++||+..
T Consensus         6 r~~~~l~~l~~~~~L~gC~~~   26 (385)
T PRK09578          6 RRRLALAALVAAFALAGCGKG   26 (385)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             799999999999998167999


No 360
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=45.45  E-value=16  Score=14.78  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999985403685433
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~   37 (271)
                      ++.+.++++++||+..|...
T Consensus         6 ll~l~~~l~L~gC~~~P~y~   25 (460)
T PRK09837          6 LLPFCVALALTGCSLAPDYQ   25 (460)
T ss_pred             HHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999982477899999


No 361
>pfam06085 Rz1 Lipoprotein Rz1 precursor. This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces.
Probab=44.69  E-value=13  Score=15.18  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=15.1

Q ss_pred             HHHHHHHH-HHHHHHHHHCCCCCCC
Q ss_conf             99999999-9999985403685433
Q gi|254780592|r   14 KIKCIVFL-IPLLLFSSCHLNPRIS   37 (271)
Q Consensus        14 ~~~~~~~l-~~~~~~~~~~~~~~~~   37 (271)
                      +++..++. .+.++.++|.+.|...
T Consensus         3 ~lkm~l~~~m~~L~vsaC~S~p~vq   27 (59)
T pfam06085         3 KLKMKLCVMMLPLVVSACSSKPPVQ   27 (59)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             2025699999899999826999865


No 362
>PRK02463 OxaA-like protein precursor; Provisional
Probab=44.12  E-value=18  Score=14.48  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             899999999999998540368543311
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRISIP   39 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~   39 (271)
                      |-..+.+++..+++++||...+....+
T Consensus         7 ~~~~~~~~~~~~l~LsgC~~~~~~~~~   33 (307)
T PRK02463          7 RILFSGLALSMLLTLTGCVGRDKHGNP   33 (307)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999999999634689999997


No 363
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.96  E-value=18  Score=14.47  Aligned_cols=128  Identities=11%  Similarity=-0.022  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHCCHH---HH
Q ss_conf             99999999999995757879999999999874--1001244666556632752100135555321---0000011---25
Q gi|254780592|r   52 LLEVTSTIGLQYQSHTKNKMIGIVYADVLRRV--GRTAQALAVMRQVAILYPEDQEVLAAYGKSL---ANAGYLD---EG  123 (271)
Q Consensus        52 ~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---~~~g~~~---~A  123 (271)
                      ++.-.++.+.+++.+|++-..|...--++...  ..+..-..+.++.+..+|.+-.+|.-...+.   ...+++.   +-
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e  169 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE  169 (328)
T ss_pred             HHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCHHHCCCHHHHHH
T ss_conf             30578999999851884122268999999738886500269999998602665454044576533131431231068888


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             887642211000023356699999997---4------2111110000000000000001245777
Q gi|254780592|r  124 LDAINRAQRPDIPDWQLISAKGSVLAQ---M------GKHSEALIEYERALELSPNESSIVSNIA  179 (271)
Q Consensus       124 ~~~~~~a~~~~p~~~~~~~~lg~~~~~---~------~~~~~A~~~~~~~~~~~p~~~~~~~~~~  179 (271)
                      .+.-...+..++.+..+|..+-.....   .      ...++-++..-..+-..|++.+++...-
T Consensus       170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r  234 (328)
T COG5536         170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR  234 (328)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             77478998607777388888999999998602621289999999999862304854331156777


No 364
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=43.89  E-value=15  Score=14.97  Aligned_cols=19  Identities=21%  Similarity=0.439  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999985403685
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~   34 (271)
                      +.++.++.+++++||+..+
T Consensus         2 r~l~~~~a~l~LsGCa~~~   20 (231)
T PRK12788          2 RLLVAILACLALAGCANNL   20 (231)
T ss_pred             CHHHHHHHHHHHHHHCCCC
T ss_conf             0899999999976403874


No 365
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=42.08  E-value=19  Score=14.29  Aligned_cols=27  Identities=19%  Similarity=0.561  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             999999999985403685433117999
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRISIPDPES   43 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~   43 (271)
                      ++++++..+.|+||-..--...+..++
T Consensus         7 ~l~~l~l~l~L~gCk~~Ly~gL~e~eA   33 (246)
T COG4669           7 YLFLLLLILLLTGCKVDLYTGLSEKEA   33 (246)
T ss_pred             HHHHHHHHHHHHCCHHHHHCCCCHHHH
T ss_conf             999999999983356988707987678


No 366
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=41.75  E-value=19  Score=14.26  Aligned_cols=17  Identities=24%  Similarity=0.446  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             99999999998540368
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~   33 (271)
                      ...+++++++|+||++.
T Consensus         7 ~~~il~~al~l~GCs~~   23 (200)
T COG3417           7 YASILLLALFLSGCSSE   23 (200)
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             99999999998411367


No 367
>KOG0567 consensus
Probab=41.71  E-value=19  Score=14.25  Aligned_cols=183  Identities=11%  Similarity=0.024  Sum_probs=112.4

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHCCH--
Q ss_conf             98420199999999999995757879999999999874100124466655663275210---0135555321000001--
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQ---EVLAAYGKSLANAGYL--  120 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~--  120 (271)
                      .+.+-+...|+..+...+......|.+....|+++-..| .....+++++.. .+|-..   .....+.++....+-.  
T Consensus        59 ~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~  136 (289)
T KOG0567          59 VLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKI  136 (289)
T ss_pred             HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             334214411357999873334422488889999987514-612478999985-277641005899999999875200344


Q ss_pred             ----------HHHH---HHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ----------1258---876--4221100002335669999999742111110000000000000001245777654332
Q gi|254780592|r  121 ----------DEGL---DAI--NRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLM  185 (271)
Q Consensus       121 ----------~~A~---~~~--~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  185 (271)
                                +.+-   ..+  -+..-.+.+.+...-.++..+.+.-..++|+..+.+.+...  +.-.....+..+ .|
T Consensus       137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVf-GQ  213 (289)
T KOG0567         137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVF-GQ  213 (289)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHH-HH
T ss_conf             556842147999863113199999999842035789986425766258589999999751263--399899999998-50


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             2355435999999953898547888999999986998999999998629
Q gi|254780592|r  186 GDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       186 g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      =+...|+..+.+.+.-...++-++..-|.++...++ +++..++++.+.
T Consensus       214 l~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~~  261 (289)
T KOG0567         214 LQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYLG  261 (289)
T ss_pred             CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-HHHHHHHHHHCC
T ss_conf             146023699999998620131799999999873167-899999999818


No 368
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.60  E-value=19  Score=14.24  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             999999999854036854331179999998420---19999999999999575787999999999987410012446665
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRISIPDPESLENMNHE---QLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMR   94 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~   94 (271)
                      .++.+.++.++||.+.|.-..-.- +.-..+.|   +..+|..-.++-.     -.-+-..+|.+|...|-..-|..-=-
T Consensus         8 ~~~~v~lL~LagCaTaP~~~~N~C-avF~qr~g~fnnW~~aA~~~er~~-----GvPVpVlMAtiy~ESgFk~~ArPPRt   81 (197)
T COG4764           8 LVFAVVLLALAGCATAPSQVNNVC-AVFDQRDGWFNNWQRAALRTEREY-----GVPVPVLMATIYTESGFKHNARPPRT   81 (197)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHH-HHHHHCCCHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999703036876765256-655506741657999999988872-----99716789998876148777899751


Q ss_pred             HHHHCCC
Q ss_conf             5663275
Q gi|254780592|r   95 QVAILYP  101 (271)
Q Consensus        95 ~al~~~p  101 (271)
                      +.+-.-|
T Consensus        82 klLgfIP   88 (197)
T COG4764          82 KLLGFIP   88 (197)
T ss_pred             EEEEEEE
T ss_conf             2676640


No 369
>pfam10938 YfdX YfdX protein. YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in E. coli.
Probab=41.58  E-value=19  Score=14.24  Aligned_cols=62  Identities=21%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             1245777654332235543599999995-------389-8547888999999986998999999998629
Q gi|254780592|r  173 SIVSNIAMSYLLMGDLKTAEEKLRFASQ-------MIG-ADSRIRQNLALVVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       173 ~~~~~~~~~~~~~g~~~~A~~~~~~al~-------~~p-~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~  234 (271)
                      ......+...+..|+...|...++-+-.       .-| .....-...|..+...|++.||...++.+++
T Consensus        76 ~~a~~~A~~~l~~Gd~~~A~~~L~~a~~ev~~~~~~lPL~~~~~av~~A~~lL~~gk~~eA~~aL~~A~~  145 (155)
T pfam10938        76 KAAIKKANELLKKGEKQAARETLKLAGSEVVITVALLPLAQTPAAVKQAASLLDEGKYYEAKAALKEALD  145 (155)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             9999999999977898999999986366405777736715209999999999977997899999999861


No 370
>PRK02944 OxaA-like protein precursor; Validated
Probab=41.31  E-value=19  Score=14.22  Aligned_cols=22  Identities=9%  Similarity=0.092  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      |......++..+++++||+..+
T Consensus         4 ~~~~~~~~~~~~~~lsgC~~~~   25 (255)
T PRK02944          4 KLGLLAMVVALMAILAGCSEVN   25 (255)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999999996246889


No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.85  E-value=20  Score=14.17  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=11.4

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             99999998699899999999862
Q gi|254780592|r  211 NLALVVGLQGRMKEAYSIASQEL  233 (271)
Q Consensus       211 ~La~~~~~~g~~~eA~~~~~~~L  233 (271)
                      .||.+|..+|+.+.|..+++.++
T Consensus         4 DLA~aYiemGD~egAr~lL~EVi   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             89999998298898999999999


No 372
>PRK11548 hypothetical protein; Provisional
Probab=40.76  E-value=20  Score=14.16  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98999999999999985403685
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      +|.+ +...+++++.++||++.+
T Consensus         3 ~k~l-~~a~ll~~lllsgCS~~~   24 (113)
T PRK11548          3 CKTL-TAAAAVLLMLTAGCSTLE   24 (113)
T ss_pred             HHHH-HHHHHHHHHHHCCCCCCC
T ss_conf             5788-999999999980115787


No 373
>PRK11679 lipoprotein; Provisional
Probab=40.56  E-value=20  Score=14.14  Aligned_cols=21  Identities=14%  Similarity=0.369  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999985403685
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      ++.-++-+++++++++|++.+
T Consensus         9 ~~~~v~~~~lv~~L~ACss~~   29 (345)
T PRK11679          9 RLAKVAGVSLVLLLAACSSDQ   29 (345)
T ss_pred             HHHHHHHHHHHHHHHHCCCCH
T ss_conf             377788899999998607975


No 374
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=40.18  E-value=20  Score=14.11  Aligned_cols=20  Identities=20%  Similarity=0.343  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999998540368543
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~   36 (271)
                      +++++.++++++||++....
T Consensus         5 ~l~~~~~~~~L~GC~~~~~~   24 (238)
T PRK12696          5 LLAASCAVLLLSGCNAARQQ   24 (238)
T ss_pred             HHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999995165688888


No 375
>pfam10368 YkyA Putative cell-wall binding lipoprotein. YkyA is a family of proteins containing a lipoprotein signal and a hydrolase domain. It is similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely to belong to pathways important for pathogenicity.
Probab=40.16  E-value=20  Score=14.11  Aligned_cols=16  Identities=19%  Similarity=0.636  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHCCCCCC
Q ss_conf             9999998540368543
Q gi|254780592|r   21 LIPLLLFSSCHLNPRI   36 (271)
Q Consensus        21 l~~~~~~~~~~~~~~~   36 (271)
                      ++++++|+||.+...+
T Consensus         2 ~~s~~lLaGC~~~~~p   17 (205)
T pfam10368         2 ILSILLLTGCTTGKKP   17 (205)
T ss_pred             CHHHHHHHHHCCCCCH
T ss_conf             1899999862699985


No 376
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=39.69  E-value=21  Score=14.06  Aligned_cols=18  Identities=28%  Similarity=0.700  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHCCCCC
Q ss_conf             999999999854036854
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~   35 (271)
                      +++++.++.++||++...
T Consensus         5 ~~l~~~~l~LagCas~~~   22 (26)
T pfam08139         5 LLLLLALLLLAGCASXXX   22 (26)
T ss_pred             HHHHHHHHHHHCCCCCCC
T ss_conf             999999999823320013


No 377
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996; InterPro: IPR014338   This entry is found in Myxococcus xanthus DK 1622. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or a region of low-complexity sequence. This domain is not repeated, and is usually adjacent to the WGR domain..
Probab=39.38  E-value=19  Score=14.27  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=16.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf             999999957578799999999998741001
Q gi|254780592|r   58 TIGLQYQSHTKNKMIGIVYADVLRRVGRTA   87 (271)
Q Consensus        58 ~~~~al~~~P~~~~~~~~~a~~l~~~g~~~   87 (271)
                      .|-++|-.+|.+-...+.||.=|...|+..
T Consensus         4 alL~AI~~~P~dDT~RLvYADWLdE~g~~~   33 (48)
T TIGR02996         4 ALLRAILAHPDDDTPRLVYADWLDEHGDPA   33 (48)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHCCCCCHH
T ss_conf             779999739898864655401101578701


No 378
>pfam11153 DUF2931 Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=39.03  E-value=20  Score=14.11  Aligned_cols=16  Identities=38%  Similarity=0.752  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999854036
Q gi|254780592|r   17 CIVFLIPLLLFSSCHL   32 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~   32 (271)
                      .++++++.+.+++|++
T Consensus         3 ~i~~ll~~lll~aCs~   18 (202)
T pfam11153         3 KILLLLLLLLLTACST   18 (202)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             1489999999876025


No 379
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=38.62  E-value=21  Score=13.96  Aligned_cols=24  Identities=21%  Similarity=0.592  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999999999998540368
Q gi|254780592|r   10 LFLKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        10 ~f~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      .+++.+...+..+.++++++|+..
T Consensus         2 ~~~~~~~~~l~~~As~LL~aC~~~   25 (206)
T COG3017           2 PMMKRLLFLLLALASLLLTACTLT   25 (206)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             527778789999999999756566


No 380
>PHA00407 phage lambda Rz1-like protein
Probab=37.27  E-value=22  Score=13.83  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899999999999998540368543
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      |....-.+++++.+++||++....
T Consensus        32 kaaLIGlllicv~tISGCaSes~l   55 (84)
T PHA00407         32 KAALIGLLLICVATISGCASESKL   55 (84)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999997666502569


No 381
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=37.07  E-value=22  Score=13.86  Aligned_cols=17  Identities=12%  Similarity=0.352  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999999985403685
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~   34 (271)
                      +++.+++++++||++.+
T Consensus         4 l~l~~~~l~LsGC~~~~   20 (220)
T PRK12407          4 LILTPMVLALCGCESPA   20 (220)
T ss_pred             HHHHHHHHHHHCCCCCC
T ss_conf             79999999973658888


No 382
>pfam06604 consensus
Probab=36.62  E-value=20  Score=14.19  Aligned_cols=22  Identities=18%  Similarity=0.393  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9899999999999998540368
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      ..|+..++++.+++.++||+..
T Consensus         3 ~sk~~~~~~~~~v~~laGCq~~   24 (181)
T pfam06604         3 FSKAGLVAGLAAVLVLAGCQRS   24 (181)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCC
T ss_conf             2067789999999997344533


No 383
>PRK10796 LPS-assembly lipoprotein RlpB; Provisional
Probab=36.22  E-value=23  Score=13.73  Aligned_cols=29  Identities=14%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             89999999999999854036854331179
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRISIPDP   41 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   41 (271)
                      +.++.+++.+++++++||...-+.....+
T Consensus         2 r~l~~l~l~lavll~agCGFhLRg~~~lP   30 (196)
T PRK10796          2 RYLATLLLSLAVLVTAGCGWHLRGTTQVP   30 (196)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             56999999999999747671576899998


No 384
>COG5461 Type IV pili component [Cell motility and secretion]
Probab=35.95  E-value=24  Score=13.70  Aligned_cols=24  Identities=13%  Similarity=0.362  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999999985403685433
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      +++.++.......++||.+.++..
T Consensus         7 Pvk~VL~~a~~allagCAs~d~~~   30 (224)
T COG5461           7 PVKSVLLVAATALLAGCASRDPST   30 (224)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             528899999999863213689655


No 385
>pfam07980 SusD SusD family. This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding.
Probab=35.61  E-value=24  Score=13.66  Aligned_cols=29  Identities=28%  Similarity=0.474  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             79999999999874100124466655663
Q gi|254780592|r   70 KMIGIVYADVLRRVGRTAQALAVMRQVAI   98 (271)
Q Consensus        70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~   98 (271)
                      .++++.+|+++.+.|+..+|.+.++++.+
T Consensus        83 aev~L~~AEA~~~~g~~~~A~~~in~vR~  111 (211)
T pfam07980        83 AEVLLMYAEALNELGGTAEAIEYLNKVRE  111 (211)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999999999764882899999999998


No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=35.56  E-value=24  Score=13.66  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             9999999999985403685433117
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNPRISIPD   40 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~~~~   40 (271)
                      .+..++.++++++||++.|....+.
T Consensus         8 ~~~~~~~~~~llaGCaslP~ss~pq   32 (590)
T PRK13616          8 ALAALLAVALLVAGCASLPSSSAPQ   32 (590)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999999999861203689999972


No 387
>pfam08631 SPO22 Meiosis protein SPO22/ZIP4 like. SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation.
Probab=35.39  E-value=24  Score=13.64  Aligned_cols=123  Identities=12%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             HHHCCHHHHHHHHHHHHHHC----CCCH----HHHHHHHHHHHHHH-CCHHHHHHHHHHHHCCC---CC-----------
Q ss_conf             84201999999999999957----5787----99999999998741-00124466655663275---21-----------
Q gi|254780592|r   47 MNHEQLLEVTSTIGLQYQSH----TKNK----MIGIVYADVLRRVG-RTAQALAVMRQVAILYP---ED-----------  103 (271)
Q Consensus        47 ~~~~~~~~A~~~~~~al~~~----P~~~----~~~~~~a~~l~~~g-~~~~A~~~~~~al~~~p---~~-----------  103 (271)
                      ..+|+++-|..++.|+=...    |+..    ...++.|..+...+ +++.|...++++.+.-+   +.           
T Consensus         4 w~qgd~~~A~~~~~k~~~l~~~~~p~~~~~La~~~yn~G~~ll~~~~~~~~A~~wL~ra~d~l~~~~~~~~~~~~~~eLr   83 (280)
T pfam08631         4 WRQGDLDLAEHLLSKAKSLKNSLDPDLTEELARVLYNIGKSLLERKTDFSEAVKWLQRALDLLEKGAKNDQKSTEGSELK   83 (280)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             77558699999999878998668969999999999999999997589879999999999998626653133685488899


Q ss_pred             CHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC
Q ss_conf             0013555532100000112---58876422110000233566999999974-211111000000000000
Q gi|254780592|r  104 QEVLAAYGKSLANAGYLDE---GLDAINRAQRPDIPDWQLISAKGSVLAQM-GKHSEALIEYERALELSP  169 (271)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p  169 (271)
                      ..++..++.++...+..+.   |...+.-.....|+.+..+...-.++.+. ++.+...+.+..++....
T Consensus        84 ~~iL~~La~a~l~~~~~es~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~~L~~mi~~~~  153 (280)
T pfam08631        84 FSILRLLAKALLETGESESVLKALKALSLLESEFPNKPELYLLALEILKKRPGPEEEYEDVLMRMIKSVD  153 (280)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9999999999844687468999999999998617887248999999997389964899999999998467


No 388
>KOG0292 consensus
Probab=35.02  E-value=24  Score=13.61  Aligned_cols=47  Identities=11%  Similarity=-0.001  Sum_probs=37.3

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9842019999999999999575787999999999987410012446665566
Q gi|254780592|r   46 NMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVA   97 (271)
Q Consensus        46 ~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~al   97 (271)
                      .++-|+++.|.+.-.+.     ++++.|.++|+.-.++|+..-|.-.|++.-
T Consensus       653 aLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k  699 (1202)
T KOG0292         653 ALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTK  699 (1202)
T ss_pred             EHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             03408899999998733-----867899999999998345488999998763


No 389
>KOG0686 consensus
Probab=34.97  E-value=24  Score=13.60  Aligned_cols=173  Identities=14%  Similarity=0.040  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             9999999999957578------799999999998741001244666556632752---1001355553210000011258
Q gi|254780592|r   54 EVTSTIGLQYQSHTKN------KMIGIVYADVLRRVGRTAQALAVMRQVAILYPE---DQEVLAAYGKSLANAGYLDEGL  124 (271)
Q Consensus        54 ~A~~~~~~al~~~P~~------~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~  124 (271)
                      .-.+.++.-++...+|      ..++..+|.-|..-|+.+.|+..|-++-.--..   ....+.++-.+-..+|+|.+..
T Consensus       128 ~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~  207 (466)
T KOG0686         128 LKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVL  207 (466)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             88999999999862012569999999999999998433888876301334543001899999999999997424314333


Q ss_pred             HHHHHHHHHH----C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHH-HHHHHH
Q ss_conf             8764221100----0----02335669999999742111110000000000--------00000124577765-433223
Q gi|254780592|r  125 DAINRAQRPD----I----PDWQLISAKGSVLAQMGKHSEALIEYERALEL--------SPNESSIVSNIAMS-YLLMGD  187 (271)
Q Consensus       125 ~~~~~a~~~~----p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~-~~~~g~  187 (271)
                      ....++...-    .    -.+.....-|......+.+..|...|..+..-        .|.+..++..+..+ -+...+
T Consensus       208 sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~  287 (466)
T KOG0686         208 SYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQD  287 (466)
T ss_pred             HHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHCCCCHHH
T ss_conf             67777774730245577744841679988999987778999999982787766752114600367887667650478999


Q ss_pred             HHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             554---35999999953898547888999999986998999999998
Q gi|254780592|r  188 LKT---AEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       188 ~~~---A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      +..   .-..|+.-++..|.-.++   ++..|.  ++|.--.+.+++
T Consensus       288 Lk~~vi~n~~Fk~flel~Pqlr~i---l~~fy~--sky~~cl~~L~~  329 (466)
T KOG0686         288 LKLNVIKNESFKLFLELEPQLREI---LFKFYS--SKYASCLELLRE  329 (466)
T ss_pred             HHHHHHCCHHHHHHHHCCHHHHHH---HHHHHH--HHHHHHHHHHHH
T ss_conf             999987005566677407699999---999862--568899999997


No 390
>TIGR00756 PPR pentatricopeptide repeat domain; InterPro: IPR002885   Pentatricopeptide repeat proteins are characterised by the presence of a tandem array of repeats, where the number of PPR motifs controls the affinity and specificity of the PPR protein for RNA. These proteins occur predominantly in plants, where they appear to play essential roles in RNA/DNA metabolism in mitochondria and chloroplasts . It has been suggested that each of the highly variable PPR proteins is a gene-specific regulator of plant organellar RNA metabolism. PPR proteins may also play a role in organelle biogenesis, probably via binding to organellar transcripts . Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation , and crp1, which is involved in RNA processing . The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organization similar to the human BRCA1 protein..
Probab=34.83  E-value=25  Score=13.59  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=8.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999999986998999999998
Q gi|254780592|r  211 NLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       211 ~La~~~~~~g~~~eA~~~~~~  231 (271)
                      .+-..+...|++++|..++++
T Consensus         5 ~li~~~~~~g~~~~a~~~~~~   25 (35)
T TIGR00756         5 TLIDGLCKAGRVEEALELFDE   25 (35)
T ss_pred             HHHHHHHCCCCHHHHHHHHHH
T ss_conf             889998628987899999999


No 391
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=34.53  E-value=25  Score=13.56  Aligned_cols=22  Identities=23%  Similarity=0.387  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999998540368543
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      +...++++.+++++||+..++.
T Consensus        18 ~~~~~~~~~~~~l~gC~~~~~~   39 (246)
T PRK12699         18 LLGPVLIVMLALVGGCSLPTPA   39 (246)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCC
T ss_conf             4888999999986044689998


No 392
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=33.29  E-value=26  Score=13.43  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             989999999999999854036854
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~   35 (271)
                      ||+....+.+.+++.++||.-...
T Consensus         1 MKk~~l~~~i~SAL~LaGCg~~s~   24 (269)
T pfam12262         1 MKKKFLALLLASALLLAGCGDDTE   24 (269)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             924799999999864111579965


No 393
>KOG2066 consensus
Probab=32.13  E-value=27  Score=13.32  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=15.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             957578799999999998741001244666556
Q gi|254780592|r   64 QSHTKNKMIGIVYADVLRRVGRTAQALAVMRQV   96 (271)
Q Consensus        64 ~~~P~~~~~~~~~a~~l~~~g~~~~A~~~~~~a   96 (271)
                      +.+..+....-.++..|...|+|..|...+-++
T Consensus       499 ~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylkl  531 (846)
T KOG2066         499 KQNSESTALLEVLAHLYLYDNKYEKALPIYLKL  531 (846)
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             751121369999999998725727799999851


No 394
>PRK10175 hypothetical protein; Provisional
Probab=31.73  E-value=16  Score=14.79  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999985403685433
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      .+++.+.++.++||+|...-.
T Consensus         3 ~i~~~~~~lllsGC~SIms~t   23 (75)
T PRK10175          3 LIVVSIMVTLLSGCGSIISRT   23 (75)
T ss_pred             EHHHHHHHHHHCCCHHHHCCC
T ss_conf             448888999981642443055


No 395
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=31.41  E-value=28  Score=13.24  Aligned_cols=22  Identities=14%  Similarity=0.431  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      +.|.++++++++.++.+|+...
T Consensus         2 Rsi~s~~L~~~~~fLvsC~gp~   23 (142)
T TIGR03042         2 RSLASLLLVLLLTFLVSCSGPA   23 (142)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7699999999999998838998


No 396
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=31.28  E-value=28  Score=13.23  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999999998540368
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      ..+.++..+++++.+++|++.
T Consensus         6 ~~~~~~~a~l~~~als~Cst~   26 (147)
T COG2913           6 TAILAIAALLGAAALSGCSTL   26 (147)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             889999999999983148754


No 397
>pfam03317 ELF ELF protein. This is a family of hypothetical proteins from cereal crops.
Probab=30.30  E-value=29  Score=13.13  Aligned_cols=42  Identities=17%  Similarity=0.174  Sum_probs=22.3

Q ss_pred             HHHHHHHHCCC---CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             99998540368---5433117999999842019999999999999575787
Q gi|254780592|r   23 PLLLFSSCHLN---PRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNK   70 (271)
Q Consensus        23 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~   70 (271)
                      -.+.+..|.+-   -+++...+++..++.-      ...|-..++.||...
T Consensus        84 ~~f~lltc~sflitlppeiqdpqalahl~g------lnfylslyeqdp~wv  128 (284)
T pfam03317        84 HLFGLLTCASFLITLPPEIQDPQALAHLAG------LNFYLSLYEQDPEWV  128 (284)
T ss_pred             HHHHHHHHHHEEEECCCCCCCHHHHHHHHC------CHHEEHHHHCCCCHH
T ss_conf             997067576603536965478799998703------511002563495099


No 398
>KOG1600 consensus
Probab=30.07  E-value=29  Score=13.14  Aligned_cols=34  Identities=21%  Similarity=0.082  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHH
Q ss_conf             3554359999999538985--4788899999998699899
Q gi|254780592|r  187 DLKTAEEKLRFASQMIGAD--SRIRQNLALVVGLQGRMKE  224 (271)
Q Consensus       187 ~~~~A~~~~~~al~~~p~~--~~~~~~La~~~~~~g~~~e  224 (271)
                      +++.++..    .+.+++.  .++...+|.++...-=.++
T Consensus       274 dyr~ge~~----y~~d~T~~~I~~~a~lGlA~D~K~~s~~  309 (321)
T KOG1600         274 DYRHGEEW----YQLDITWYLIDFFAALGLAYDLKTPSEA  309 (321)
T ss_pred             HHHHHHHH----HHHCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             56746677----5608541999999984067525776299


No 399
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=30.03  E-value=29  Score=13.10  Aligned_cols=27  Identities=15%  Similarity=0.249  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             56999998999999999999985403685
Q gi|254780592|r    6 CPVILFLKKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus         6 ~~~~~f~~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      +-++.|++..  ..+++++++++||+...
T Consensus         2 ~~~~~~l~~~--a~ll~~~~~l~~C~~~~   28 (272)
T PRK09861          2 KLTTHHLRAG--AALLLAGILLAGCDQSS   28 (272)
T ss_pred             CCHHHHHHHH--HHHHHHHHHHHHCCCCC
T ss_conf             5109999999--99999999987458976


No 400
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein; InterPro: IPR010103   This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown..
Probab=29.73  E-value=30  Score=13.07  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999985403685
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      -|++.+++|+++++|-+|+..-
T Consensus         4 dKlKlIFIL~LAvLLFSC~ke~   25 (463)
T TIGR01781         4 DKLKLIFILMLAVLLFSCKKEV   25 (463)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCC
T ss_conf             4046888999999860476211


No 401
>pfam07269 consensus
Probab=29.32  E-value=30  Score=13.02  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=16.1

Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf             999998540368543311799999984201999
Q gi|254780592|r   22 IPLLLFSSCHLNPRISIPDPESLENMNHEQLLE   54 (271)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (271)
                      +.++.++||+++....+... ..-.+|.|++.-
T Consensus         7 ~l~l~LAgC~T~d~lat~~G-p~fplNvgrwqP   38 (55)
T pfam07269         7 LLILALAGCQTNDVLATCKG-PRFPLNVGRWQP   38 (55)
T ss_pred             HHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf             99999875114671111358-863301245557


No 402
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=29.27  E-value=30  Score=13.02  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8999999999999985403685433
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      +|...++..+.++.+.||..++..+
T Consensus         2 ~k~~~avA~~~al~L~GCan~d~~S   26 (154)
T COG3133           2 IKTALAVAALMALSLTGCANNDTLS   26 (154)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             4257899999887400110587436


No 403
>pfam09680 Tiny_TM_bacill Protein of unknown function (Tiny_TM_bacill). This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=28.80  E-value=29  Score=13.17  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999854036
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHL   32 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~   32 (271)
                      ++..++++.+++++.||+-
T Consensus         5 gFaLiVVLFILLIIVG~s~   23 (26)
T pfam09680         5 GFALIVVLFILLIIVGASY   23 (26)
T ss_pred             CEEHHHHHHHHHHHHHHHH
T ss_conf             1226999999999983354


No 404
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=28.67  E-value=31  Score=12.95  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999999998540368543
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      +.+++.++++++++|++.|.-
T Consensus         4 ~~~~~~~~~~~l~~c~~~p~~   24 (362)
T PRK11162          4 KYLLMGIVVALLAACSSKPTD   24 (362)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999760479876


No 405
>PRK13614 lipoprotein LpqB; Provisional
Probab=28.42  E-value=31  Score=12.93  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999999985403685433
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~   37 (271)
                      ....+++++++.++||++.|...
T Consensus         9 ~~~~ll~~~~v~LagCasiP~sg   31 (573)
T PRK13614          9 ASLALLVLLGVTLSACAQIPRSG   31 (573)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             79999999998865404699998


No 406
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=28.41  E-value=31  Score=12.93  Aligned_cols=19  Identities=32%  Similarity=0.518  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999998540368
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~   33 (271)
                      +++++++++++++++|+..
T Consensus         7 ~~~~~~~~~~~~~~sC~~~   25 (559)
T TIGR03524         7 FKITFIVFVSLLFVSCKKK   25 (559)
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999997642588


No 407
>pfam07312 DUF1459 Protein of unknown function (DUF1459). This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=27.76  E-value=30  Score=13.06  Aligned_cols=22  Identities=36%  Similarity=0.685  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999999999998540368
Q gi|254780592|r   10 LFLKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        10 ~f~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      ||.|.+  +++.+..+++++|+..
T Consensus         1 mfqk~~--ivl~~a~fciss~qv~   22 (84)
T pfam07312         1 MFQKSL--IVLAFALFCISSCQVL   22 (84)
T ss_pred             CCCHHH--HHHHHHHHHHHHCEEE
T ss_conf             930335--6999999986111066


No 408
>PRK04168 hypothetical protein; Provisional
Probab=27.63  E-value=18  Score=14.36  Aligned_cols=52  Identities=17%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             899999999999998540368543311799999984201999999999999957
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSH   66 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   66 (271)
                      +++..+++++.++.++||.+......  .....-...|.+..+.+.+.+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~Vf~AGSL~~pf~ei~~~Fe~~   57 (336)
T PRK04168          6 RKIVIVILLLLALVFLGCVNTSEAEP--PGKLKIFHAGSLSVPFEEYEKEFEAY   57 (336)
T ss_pred             EEHHHHHHHHHHHHHCCCCCCCCCCC--CEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             22037999999999705557777788--61599997552589999999999987


No 409
>pfam06291 Lambda_Bor Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=27.58  E-value=32  Score=12.89  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98999999999999985403685
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      ||++.  +...+++.++||++..
T Consensus         1 MKk~~--~~~~~allLtgCa~QT   21 (97)
T pfam06291         1 MKKML--FAAALALLITGCAQQT   21 (97)
T ss_pred             CHHHH--HHHHHHHHHCCCCCEE
T ss_conf             92259--9999999972133049


No 410
>pfam03032 Brevenin Brevenin/esculentin/gaegurin/rugosin family. This family contains a number of defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.
Probab=27.55  E-value=29  Score=13.16  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999999999998540368
Q gi|254780592|r   10 LFLKKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        10 ~f~~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      +++|+-..+++++..+.+|-|-..
T Consensus         1 ftlKKSlll~fFLG~islSlCe~e   24 (46)
T pfam03032         1 FTLKKSLLLVLFLGLVSLSLCEEE   24 (46)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             961053899999865147652443


No 411
>pfam09533 DUF2380 Predicted lipoprotein of unknown function (DUF2380). This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=27.29  E-value=33  Score=12.81  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             999999999985403685433117
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRISIPD   40 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~   40 (271)
                      .+.++++++.+.||++.++.....
T Consensus         6 ~~~l~vLal~~~GCasaa~~p~~~   29 (220)
T pfam09533         6 VLWLLVLALLWVGCASAAPTPAQQ   29 (220)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999999999984501578986666


No 412
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single HMM families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=26.95  E-value=33  Score=12.77  Aligned_cols=51  Identities=16%  Similarity=0.139  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             999999999985403685433117999999842019999999999999575787999
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIG   73 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~   73 (271)
                      ..+++...+++.+|+........-.-      .+|.-.-+..++.+++...+++.--
T Consensus        12 lal~L~~~l~l~~cs~a~~s~ltG~Y------~~DT~~Vi~tlr~~i~lp~d~pn~~   62 (135)
T TIGR03044        12 LALVLGLCLLLTACSGAAKTRLTGDY------VEDTLAVIQTLREAIDLPDDDPNKS   62 (135)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCH------HHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99999999997345677765678752------9989999999999980898998889


No 413
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=26.78  E-value=34  Score=12.75  Aligned_cols=20  Identities=15%  Similarity=0.227  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999998540368543
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~   36 (271)
                      ....+.++++++||++.|..
T Consensus         9 ~~a~l~~~llLaGCa~~~~~   28 (478)
T PRK11459          9 ATASLPLFILLAGCAPMHET   28 (478)
T ss_pred             HHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999998378899999


No 414
>TIGR00380 cobD cobalamin biosynthesis protein CobD; InterPro: IPR004485   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon .; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane.
Probab=26.76  E-value=34  Score=12.75  Aligned_cols=49  Identities=14%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             9999985403685433117999999842019999999999999575787
Q gi|254780592|r   22 IPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNK   70 (271)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~   70 (271)
                      +..+.+++|-+.-.....-.+-.+.+..||.+.|...++-.+-+|.++.
T Consensus        89 i~~~Ll~s~is~~sL~~~A~~~~E~~k~GDle~AR~~l~~~VSRdt~~L  137 (322)
T TIGR00380        89 IAVILLSSVISVKSLVEAAKKVIESLKEGDLEDARKKLQMIVSRDTEEL  137 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999999999972202666557982678999876422475534


No 415
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD; InterPro: IPR013361    Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known..
Probab=26.73  E-value=34  Score=12.74  Aligned_cols=26  Identities=12%  Similarity=0.107  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             99999999985403685433117999
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRISIPDPES   43 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~~~   43 (271)
                      ++++..++.|+||.++++...+....
T Consensus         2 ~~~~a~~~~LagC~~~~P~~~~~~~p   27 (211)
T TIGR02522         2 VLLLALTALLAGCASTDPEIDVGALP   27 (211)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             78988999975305888755534323


No 416
>PRK11653 hypothetical protein; Provisional
Probab=26.01  E-value=35  Score=12.66  Aligned_cols=20  Identities=5%  Similarity=0.316  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999985403685433
Q gi|254780592|r   18 IVFLIPLLLFSSCHLNPRIS   37 (271)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~   37 (271)
                      .+.+..+++|+||...+...
T Consensus        25 alav~avF~LagCe~~~e~~   44 (223)
T PRK11653         25 ALAVAAVFMLAGCEKSDETV   44 (223)
T ss_pred             HHHHHHHHHHHHCCCCCCCH
T ss_conf             88988999865047886640


No 417
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=25.61  E-value=35  Score=12.62  Aligned_cols=20  Identities=15%  Similarity=0.424  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999998540368543
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~~   36 (271)
                      .+.+.+.++.++||+.....
T Consensus         3 ~lpi~llal~ltGCs~l~~~   22 (133)
T PRK10781          3 ALPICLLALMLTGCSMLSRS   22 (133)
T ss_pred             HHHHHHHHHHHHCCCCCCCC
T ss_conf             08999999998431344548


No 418
>TIGR00926 2A1704 Oligopeptide transporter (Peptide:H+ symporter); InterPro: IPR004768 Oligopeptide transporter, peptide:H+ symporter supports the proton-coupled intake of oligopeptides of 2 to 4 amino acids. These proteins may constitute a major route for the absorption of the end products of protein digestion.; GO: 0015198 oligopeptide transporter activity, 0006857 oligopeptide transport, 0016021 integral to membrane.
Probab=25.50  E-value=24  Score=13.65  Aligned_cols=26  Identities=15%  Similarity=0.400  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             99999999999998540368543311
Q gi|254780592|r   14 KIKCIVFLIPLLLFSSCHLNPRISIP   39 (271)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~   39 (271)
                      ||..++-++++++|.+-+.--+...|
T Consensus       193 GvPaiLMi~AlivF~~Gs~~YkK~PP  218 (781)
T TIGR00926       193 GVPAILMIVALIVFMAGSFMYKKQPP  218 (781)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             41689999999999830313475917


No 419
>PRK08878 adenosylcobinamide-phosphate synthase; Provisional
Probab=25.25  E-value=36  Score=12.58  Aligned_cols=17  Identities=12%  Similarity=0.044  Sum_probs=7.3

Q ss_pred             HHHHCCCHHHHHHHHHH
Q ss_conf             99986998999999998
Q gi|254780592|r  215 VVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       215 ~~~~~g~~~eA~~~~~~  231 (271)
                      .+...|++..|....++
T Consensus       220 ~~~~~~~~~~a~~~~~~  236 (317)
T PRK08878        220 LILLGKNAGHTFQGLLQ  236 (317)
T ss_pred             HHHHHCCHHHHHHHHHH
T ss_conf             99995699999999997


No 420
>pfam10140 essB Predicted membrane protein essB. Members of this family of prokaryotic proteins include the virulence factor essB, which is required for the synthesis and secretion of EsxA and EsxB, both ESAT-6 like proteins.
Probab=24.81  E-value=37  Score=12.52  Aligned_cols=80  Identities=19%  Similarity=0.112  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             97421111100000000000000012457776543322355435-99999995389854788899999998699899999
Q gi|254780592|r  149 AQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAE-EKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYS  227 (271)
Q Consensus       149 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~  227 (271)
                      .-..++.+.+..++..-. ..-+....+.+|..|+...+..... ...-.-+...   ++-.+-+==++...|+++||..
T Consensus       233 fi~~dYs~VI~~L~~~~~-~~lp~~~kY~LA~SyV~~e~Ls~~QK~~Ilnnitlk---Sde~yLlYWIyiGrg~~eeAld  308 (359)
T pfam10140       233 FLNVDYSKVITTLEKYDP-ESLPKSVKYELAYSYVQVEKLSDDQKENILNNVTLK---SDELYLLYWIYIGRGEFEEALD  308 (359)
T ss_pred             HHHCCHHHHHHHHHHCCH-HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC---CCHHHHHHHHHHCCCCHHHHHH
T ss_conf             986258999987620793-249977777898999961666799999998307756---7789999999976876499999


Q ss_pred             HHHHH
Q ss_conf             99986
Q gi|254780592|r  228 IASQE  232 (271)
Q Consensus       228 ~~~~~  232 (271)
                      +.+.-
T Consensus       309 iA~~L  313 (359)
T pfam10140       309 IARRL  313 (359)
T ss_pred             HHHHC
T ss_conf             99847


No 421
>PRK11616 hypothetical protein; Provisional
Probab=24.51  E-value=37  Score=12.49  Aligned_cols=19  Identities=21%  Similarity=0.301  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999985403685
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~   34 (271)
                      ...++....+.++||++..
T Consensus         6 ~~f~~~~g~l~~sGCSSvM   24 (109)
T PRK11616          6 LAFMICSGMLLLSGCSSVM   24 (109)
T ss_pred             HHHHHHHHHHHHCCCHHHH
T ss_conf             3799985899875751230


No 422
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit; InterPro: IPR016043 Virtually all mitochondrial precursors are imported via the same mechanism : precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 ..
Probab=24.34  E-value=37  Score=12.47  Aligned_cols=63  Identities=14%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHHHCC--CCHHH-------HHHHHHHHHHHH--CCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             19999999999999575--78799-------999999998741--00124466655663275210013555532
Q gi|254780592|r   51 QLLEVTSTIGLQYQSHT--KNKMI-------GIVYADVLRRVG--RTAQALAVMRQVAILYPEDQEVLAAYGKS  113 (271)
Q Consensus        51 ~~~~A~~~~~~al~~~P--~~~~~-------~~~~a~~l~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~  113 (271)
                      .++.-++..-.-+..+|  .+++-       -+..|+.|...|  +.++|...|-+|+...|...+.+.-+-++
T Consensus        65 k~~~~~r~~~~~~~~~P~p~d~~e~e~fFl~~V~~GE~L~~q~P~~~~e~a~~fy~Al~Vyp~P~~Ll~Iyq~T  138 (155)
T TIGR00985        65 KLRKVVREAVAELAKEPDPSDAEEKEAFFLEEVQLGEELLAQQPDKVKEAALHFYKALKVYPQPQDLLSIYQRT  138 (155)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             99899999998764078999887898799999998778504899517899999998876279924899998642


No 423
>KOG2997 consensus
Probab=24.33  E-value=37  Score=12.47  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=11.3

Q ss_pred             HHHCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             741001244666556632752100
Q gi|254780592|r   82 RVGRTAQALAVMRQVAILYPEDQE  105 (271)
Q Consensus        82 ~~g~~~~A~~~~~~al~~~p~~~~  105 (271)
                      +.|..-+|+..+..|+++.|+-..
T Consensus        31 q~G~l~dai~fYR~AlqI~~diEs   54 (366)
T KOG2997          31 QDGSLYDAINFYRDALQIVPDIES   54 (366)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf             347487778887765538800999


No 424
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=24.15  E-value=38  Score=12.45  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHCCC
Q ss_conf             999899999999-999998540368
Q gi|254780592|r   10 LFLKKIKCIVFL-IPLLLFSSCHLN   33 (271)
Q Consensus        10 ~f~~~~~~~~~l-~~~~~~~~~~~~   33 (271)
                      ||+|.+++-.+. .+++.++|.+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~a~a   25 (439)
T PRK10974          1 MFMKSLRSTALGLALGLALSGNAQA   25 (439)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9557899999999999984455679


No 425
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=24.14  E-value=38  Score=12.45  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf             9999999854036854331179999998420199999
Q gi|254780592|r   20 FLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVT   56 (271)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~   56 (271)
                      ++++++.+++|+++....+...- .-.++.|.++-+-
T Consensus         5 lL~l~l~La~CqT~D~lAtckGp-~FplNVgrWqpt~   40 (55)
T PRK13859          5 LLCLALALAGCQTNDTLASCKGP-IFPLNVGRWQPTP   40 (55)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCH
T ss_conf             99999999860046831124588-6331224555786


No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.13  E-value=38  Score=12.45  Aligned_cols=43  Identities=16%  Similarity=0.155  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             543599999995--3898547888999999986998999999998
Q gi|254780592|r  189 KTAEEKLRFASQ--MIGADSRIRQNLALVVGLQGRMKEAYSIASQ  231 (271)
Q Consensus       189 ~~A~~~~~~al~--~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~  231 (271)
                      +.+...|+....  +....+..|...|..+...|++.+|.++|+.
T Consensus        80 ~~p~~if~~l~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~  124 (125)
T smart00777       80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL  124 (125)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             999999999998780243699999999999984889889999877


No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=24.01  E-value=38  Score=12.43  Aligned_cols=17  Identities=24%  Similarity=0.448  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999999854036
Q gi|254780592|r   16 KCIVFLIPLLLFSSCHL   32 (271)
Q Consensus        16 ~~~~~l~~~~~~~~~~~   32 (271)
                      ..++++++.+.|++|++
T Consensus        10 ~l~l~~~~~~~~~~c~~   26 (333)
T PRK13684         10 NLLLLLALGLVLSGCST   26 (333)
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             99999999986322356


No 428
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=23.66  E-value=38  Score=12.39  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9899999999999998540368543
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCHLNPRI   36 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~   36 (271)
                      .|.+.++++.+.++.+.||......
T Consensus         3 kk~~~~~~~a~g~~~l~GC~~r~~~   27 (234)
T PRK10523          3 KKAILTALAAVGLFALMGCNNRAEV   27 (234)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5899999999999987634665434


No 429
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=23.44  E-value=39  Score=12.36  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999999998540368
Q gi|254780592|r   13 KKIKCIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~   33 (271)
                      |+...+....++++++||.+.
T Consensus         2 kktl~i~~ta~vliLs~C~~~   22 (382)
T COG4851           2 KKTLGIAATASVLILSGCFPF   22 (382)
T ss_pred             CHHHHHHHHHHHHHHHHCCCC
T ss_conf             401558999999998611676


No 430
>COG5510 Predicted small secreted protein [Function unknown]
Probab=23.04  E-value=40  Score=12.31  Aligned_cols=17  Identities=18%  Similarity=0.415  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             99999999998540368
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLN   33 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~   33 (271)
                      .+++++..+.+++|-+.
T Consensus         9 i~~vll~s~llaaCNT~   25 (44)
T COG5510           9 IALVLLASTLLAACNTM   25 (44)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999886630


No 431
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=22.98  E-value=40  Score=12.31  Aligned_cols=19  Identities=26%  Similarity=0.466  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999999854036854
Q gi|254780592|r   17 CIVFLIPLLLFSSCHLNPR   35 (271)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~~   35 (271)
                      .++.+..+++|+||+..++
T Consensus         4 lil~l~~~l~L~gCa~~~~   22 (215)
T pfam05643         4 LILGLAAVLALSACQVQKA   22 (215)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             4999999999862348999


No 432
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=22.58  E-value=40  Score=12.26  Aligned_cols=20  Identities=20%  Similarity=0.343  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             98999999999999985403
Q gi|254780592|r   12 LKKIKCIVFLIPLLLFSSCH   31 (271)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~   31 (271)
                      |||....+.+.+++.++||.
T Consensus         1 MKk~~l~~~iasal~LagCG   20 (792)
T TIGR03502         1 MKKLLLSLAIASALGLAGCG   20 (792)
T ss_pred             CCHHHHHHHHHHHHHHHCCC
T ss_conf             93378999999987500457


No 433
>PRK09857 hypothetical protein; Provisional
Probab=22.54  E-value=41  Score=12.25  Aligned_cols=56  Identities=16%  Similarity=0.084  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             54332235543599999995389854788899999998699899999999862917
Q gi|254780592|r  181 SYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPE  236 (271)
Q Consensus       181 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~  236 (271)
                      .....|+...-...++...+..|...+.....|.-+...|+.+++..+.++-|...
T Consensus       215 Yll~~~~~~~~~~fi~~la~~~p~~~E~iMTIAE~l~qEG~q~~~~~iAr~mL~~G  270 (292)
T PRK09857        215 YILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG  270 (292)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99861674458999999998584101378659999999999999999999999869


No 434
>pfam01535 PPR PPR repeat. This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. #=GF CC  This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR.
Probab=22.16  E-value=41  Score=12.21  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=7.6

Q ss_pred             HHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999998699899999999
Q gi|254780592|r  211 NLALVVGLQGRMKEAYSIAS  230 (271)
Q Consensus       211 ~La~~~~~~g~~~eA~~~~~  230 (271)
                      .+-..+...|++++|.++++
T Consensus         5 ~li~~~~~~g~~~~a~~~~~   24 (31)
T pfam01535         5 SLISGYCKAGKLEEALELFK   24 (31)
T ss_pred             HHHHHHHHCCCHHHHHHHHH
T ss_conf             99999987799999999999


No 435
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25  E-value=43  Score=12.09  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             998999999999999985403685
Q gi|254780592|r   11 FLKKIKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        11 f~~~~~~~~~l~~~~~~~~~~~~~   34 (271)
                      |.+....++.+++++.++||.-..
T Consensus         4 l~kl~~~~~alil~~sl~gCgdkE   27 (152)
T COG4808           4 LNKLFSLVVALVLVFSLAGCGDKE   27 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             887889999999988754048666


No 436
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=20.85  E-value=44  Score=12.04  Aligned_cols=20  Identities=10%  Similarity=0.301  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999985403685
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNP   34 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~   34 (271)
                      +..++.+..++++.+|++..
T Consensus         4 ~~~~~~~~~~~~~~~c~~~~   23 (177)
T PRK10477          4 LPVVAAVTAAFLVVACSSPT   23 (177)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             78999999999997646999


No 437
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.40  E-value=45  Score=11.98  Aligned_cols=21  Identities=14%  Similarity=0.472  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             927875699999899999999
Q gi|254780592|r    1 MIILFCPVILFLKKIKCIVFL   21 (271)
Q Consensus         1 ~~~~~~~~~~f~~~~~~~~~l   21 (271)
                      |||-+=|..||..-|..++++
T Consensus         1 ~ml~~n~~~~i~~~i~FliL~   21 (141)
T PRK08476          1 MMLDINPYLMLLTFVVFLLLI   21 (141)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
T ss_conf             965776779999999999999


No 438
>pfam00244 14-3-3 14-3-3 protein.
Probab=20.35  E-value=45  Score=11.98  Aligned_cols=46  Identities=24%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHH-----CCCCCHHHHHHHHH-----HHHHCCCHHHHHHHHHHHCC
Q ss_conf             5543599999995-----38985478889999-----99986998999999998629
Q gi|254780592|r  188 LKTAEEKLRFASQ-----MIGADSRIRQNLAL-----VVGLQGRMKEAYSIASQELS  234 (271)
Q Consensus       188 ~~~A~~~~~~al~-----~~p~~~~~~~~La~-----~~~~~g~~~eA~~~~~~~L~  234 (271)
                      .+.|...|++|++     +.|.+ .++..|++     .|...++.++|..+.+++..
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~pt~-PirLgLaLN~SVF~YEi~~~~~~A~~lAk~Afd  197 (236)
T pfam00244       142 ADKALEAYKAALEIAEKELPPTH-PIRLGLALNFSVFYYEILNSPEKACELAKQAFD  197 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999999999999986289547-999999998999999981898999999999999


No 439
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.32  E-value=45  Score=11.97  Aligned_cols=15  Identities=20%  Similarity=0.346  Sum_probs=6.2

Q ss_pred             HHCCCHHHHHHHHHH
Q ss_conf             986998999999998
Q gi|254780592|r  217 GLQGRMKEAYSIASQ  231 (271)
Q Consensus       217 ~~~g~~~eA~~~~~~  231 (271)
                      ...|+.++|+.+|..
T Consensus        17 DE~g~~~eAieLYt~   31 (75)
T cd02680          17 DEKGNAEEAIELYTE   31 (75)
T ss_pred             HHCCCHHHHHHHHHH
T ss_conf             434688888999999


No 440
>pfam04090 RNA_pol_I_TF RNA polymerase I specific initiation factor.
Probab=20.18  E-value=45  Score=11.95  Aligned_cols=137  Identities=9%  Similarity=-0.103  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             999999998741001244666556632752100-1355553210000011258876422110000233566999999974
Q gi|254780592|r   73 GIVYADVLRRVGRTAQALAVMRQVAILYPEDQE-VLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQM  151 (271)
Q Consensus        73 ~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~  151 (271)
                      +..+-......++++.|..+|--++..-.-+.+ .|..-..++.+++......+.++.....-|....        ....
T Consensus        44 L~~LLhlnilr~nW~~AYk~F~LLIR~p~VDIR~iW~lG~eIL~~l~~~~~~~~Fl~wl~~~ys~~~~--------fn~~  115 (192)
T pfam04090        44 LTDLLHLNILRRNWKLAYRIFCLLIRLPSVDIRSIWPLGSEILNNLNEETSSEKFLEWLSSFYSSKSS--------FNQS  115 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH--------HCCC
T ss_conf             99999999998607899999999981678747860402799999758103289999999987567630--------0278


Q ss_pred             HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHC
Q ss_conf             211111000000000-0000001245777654332235543599999995389--8547888999999986
Q gi|254780592|r  152 GKHSEALIEYERALE-LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG--ADSRIRQNLALVVGLQ  219 (271)
Q Consensus       152 ~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~La~~~~~~  219 (271)
                      .++......|+..-. ..|...-.  .+=..+...++|.+++..+.+.+=..|  ++..+|+-.|.+....
T Consensus       116 ~~~~~~aPvfrsGSrthTP~yvit--~LW~lli~~~~y~~l~~~lsElvL~PPy~~d~~~~fi~alc~l~~  184 (192)
T pfam04090       116 TNYRSLAPVFRSGSRTHTPLYIIT--SLWNLLIKRTEYQELIDKLSELVLEPPYMDDGEIWFIYALCHLVE  184 (192)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             876566875046875545799999--999999963589999999988820799888843688899999997


Done!