HHsearch alignment for GI: 254780592 and conserved domain: pfam06552
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=97.62 E-value=0.00025 Score=44.20 Aligned_cols=87 Identities=9% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----
Q ss_conf 999999999999957578799999999998741001----------24466655663275210013555532100-----
Q gi|254780592|r 52 LLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTA----------QALAVMRQVAILYPEDQEVLAAYGKSLAN----- 116 (271)
Q Consensus 52 ~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~----- 116 (271)
T Consensus 7 FE~aRk~AE~~y~~nP~DadnLtRWGGALLELsqFq~~~ds~~Mi~dAisKlEeAL~InP~khdalWclGNA~TS~~Fl~ 86 (186)
T pfam06552 7 FEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPDAKKMIQDAISKLEEALVINPKKHDALWCIGNAYTSHAFLT 86 (186)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCC
T ss_conf 99999999998852984588898888999999861264479999999999999987139887533330054110151317
Q ss_pred ------HCCHHHHHHHHHHHHHHHCHHH
Q ss_conf ------0001125887642211000023
Q gi|254780592|r 117 ------AGYLDEGLDAINRAQRPDIPDW 138 (271)
Q Consensus 117 ------~g~~~~A~~~~~~a~~~~p~~~ 138 (271)
T Consensus 87 pD~~~A~~~F~kA~~~Fq~AvdeeP~Ne 114 (186)
T pfam06552 87 PDQTEAKDNFDKATQFFQQAVDEQPDND 114 (186)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 8789999889999999999863498618