HHsearch alignment for GI: 254780592 and conserved domain: smart00299

>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.00  E-value=0.094  Score=28.41  Aligned_cols=130  Identities=8%  Similarity=0.089  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             79999999999874100124466655663275210013555532100000112588764221100002335669999999
Q gi|254780592|r   70 KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLA  149 (271)
Q Consensus        70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~  149 (271)
T Consensus         7 ~~~~~~vi~~~e~~~~~~~L~~~L~~~~~~~~~~~~l~~~Li~~yak~~~-~~~le~~~~~----~~~yd-~~~i~~~C~   80 (140)
T smart00299        7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDNK----SNHYD-IEKVGKLCE   80 (140)
T ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHC----CCCCC-HHHHHHHHH
T ss_conf             54799999999987999999999999984576670799999999998293-8689998703----67588-999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             7421111100000000000000012457776543-32235543599999995389854788899999998
Q gi|254780592|r  150 QMGKHSEALIEYERALELSPNESSIVSNIAMSYL-LMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGL  218 (271)
Q Consensus       150 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~  218 (271)
T Consensus        81 ~~~l~~~a~~ly~~~~~----~~~----ai~~~i~~~~~~~~aie~~~~~-----~~~e~w~~l~~~~ld  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN----FKD----AIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLD  137 (140)
T ss_pred             HHCCHHHHHHHHHHCCC----HHH----HHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHC
T ss_conf             81339999999987064----999----9999999867499999999984-----999999999999855