Query gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs 122 out of 2822
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 10:14:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780593.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkpa_ c.45.1.1 (A:) Mapk pho 76.1 1.1 8.1E-05 20.6 3.3 27 160-186 91-119 (144)
2 d1m3ga_ c.45.1.1 (A:) Mapk pho 72.5 1 7.6E-05 20.8 2.4 27 160-186 89-117 (145)
3 d1vhra_ c.45.1.1 (A:) VH1-rela 69.6 1.7 0.00012 19.5 2.9 27 160-186 118-146 (178)
4 d1i9sa_ c.45.1.1 (A:) mRNA cap 67.5 2.3 0.00017 18.5 3.3 28 159-186 122-151 (194)
5 d1ohea2 c.45.1.1 (A:199-380) P 62.2 3.4 0.00025 17.5 3.3 27 160-186 117-145 (182)
6 d1fpza_ c.45.1.1 (A:) Kinase a 61.4 3.1 0.00023 17.7 3.0 27 160-186 117-146 (176)
7 d1e3oc2 a.35.1.1 (C:1-75) Oct- 56.0 4.4 0.00032 16.8 3.0 44 142-188 22-65 (75)
8 d1au7a2 a.35.1.1 (A:5-76) Pit- 53.6 4.9 0.00036 16.4 3.0 43 142-187 18-60 (72)
9 d1rxda_ c.45.1.1 (A:) Protein 51.7 5.2 0.00038 16.3 2.8 27 160-186 97-124 (152)
10 d1xria_ c.45.1.1 (A:) Putative 27.0 14 0.001 13.5 2.8 26 160-185 100-126 (151)
11 d1d5ra2 c.45.1.1 (A:14-187) Ph 20.7 18 0.0013 12.8 3.4 25 161-185 113-140 (174)
12 d1kcfa1 a.140.2.1 (A:3-38) Mit 20.6 8.7 0.00064 14.8 -0.3 16 152-167 5-20 (36)
13 d1iwga8 f.35.1.1 (A:513-566,A: 20.3 19 0.0014 12.7 5.4 69 85-156 86-157 (222)
No 1
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}
Probab=76.06 E-value=1.1 Score=20.60 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 1035688899999997--26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
--|+||||+.+.+-++ .|.+.++|.++
T Consensus 91 ~~G~~RS~~vv~aYLm~~~~~~~~~A~~~ 119 (144)
T d1mkpa_ 91 LAGISRSVTVTVAYLMQKLNLSMNDAYDI 119 (144)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 55666069999999999859899999999
No 2
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}
Probab=72.55 E-value=1 Score=20.76 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 1035688899999997--26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
--|+|||++...+-++ .|++.++|.++
T Consensus 89 ~~G~sRS~~v~~aYLm~~~~~~~~~A~~~ 117 (145)
T d1m3ga_ 89 QAGISRSATICLAYLMQSRRVRLDEAFDF 117 (145)
T ss_dssp SSSSSHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 55556079999999999869799999999
No 3
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.58 E-value=1.7 Score=19.46 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 1035688899999997--26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
-=|+||||+.+.+-++ .|++-++|.++
T Consensus 118 ~~G~sRS~~vv~aYLm~~~~~s~~~A~~~ 146 (178)
T d1vhra_ 118 REGYSRSPTLVIAYLMMRQKMDVKSALSI 146 (178)
T ss_dssp SSSSSHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 87776579999999998219899999999
No 4
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.54 E-value=2.3 Score=18.52 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=21.7
Q ss_pred HCCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 21035688899999997--26888999999
Q gi|254780593|r 159 MIPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 159 liPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
..-|.+|||+.+++-++ .|++-++|.++
T Consensus 122 C~~G~~Rsg~~i~ayL~~~~~~s~~~Ai~~ 151 (194)
T d1i9sa_ 122 CTHGFNRTGFLICAFLVEKMDWSIEAAVAT 151 (194)
T ss_dssp CSSSSHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 788777338999999999809989999999
No 5
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.17 E-value=3.4 Score=17.47 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 1035688899999997--26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
--|++|||+.+++-+. .|++.++|.++
T Consensus 117 ~~G~gRsgt~~a~yL~~~~~~~~~~Al~~ 145 (182)
T d1ohea2 117 KAGLGRTGTLIACYIMKHYRMTAAETIAW 145 (182)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 89976439999999999739999999999
No 6
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.35 E-value=3.1 Score=17.69 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHH---CCCHHHHHHH
Q ss_conf 10356888999999972---6888999999
Q gi|254780593|r 160 IPGTSRSGATITGALIL---GADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~l---G~~r~~A~~f 186 (266)
--|.+|||+.+++-+.. |.+.++|.++
T Consensus 117 ~~G~gRtg~v~~~~Li~~~~~~~~~~Ai~~ 146 (176)
T d1fpza_ 117 YGGLGRSCLVAACLLLYLSDTISPEQAIDS 146 (176)
T ss_dssp SSSSSHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 678786089999999997438999999999
No 7
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.03 E-value=4.4 Score=16.77 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 20244547788998744210356888999999972688899999999
Q gi|254780593|r 142 NYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSAAEFSF 188 (266)
Q Consensus 142 ~~~~~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSF 188 (266)
.+++.++ -+.++++.+.|-++|.+||+----+.++-+.+-+.-=
T Consensus 22 ~LG~TQ~---dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~kLkP 65 (75)
T d1e3oc2 22 KLGFTQG---DVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKP 65 (75)
T ss_dssp HTTCCHH---HHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHH
T ss_pred HCCCCHH---HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 4365589---9999999871750258899999972457988998899
No 8
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=53.61 E-value=4.9 Score=16.42 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 2024454778899874421035688899999997268889999999
Q gi|254780593|r 142 NYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSAAEFS 187 (266)
Q Consensus 142 ~~~~~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fS 187 (266)
++++.++ -+.++++.+.|.++|.+||+----+.++-+.+-+.-
T Consensus 18 ~LG~TQ~---dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~klk 60 (72)
T d1au7a2 18 KLGYTQT---NVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLK 60 (72)
T ss_dssp HHTCCHH---HHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHH
T ss_pred CCCCCHH---HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 2686299---999999986186555037788885154798899889
No 9
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}
Probab=51.72 E-value=5.2 Score=16.29 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHH-HCCCHHHHHHH
Q ss_conf 1035688899999997-26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI-LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~-lG~~r~~A~~f 186 (266)
--|++|||+.+++-+. .|++-++|.+.
T Consensus 97 ~~G~gRsg~~~a~~l~~~~~~~~~av~~ 124 (152)
T d1rxda_ 97 VAGLGRAPVLVALALIEGGMKYEDAVQF 124 (152)
T ss_dssp SSSSTTHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 6775208999999999959599999999
No 10
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.02 E-value=14 Score=13.54 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHH-HHCCCHHHHHH
Q ss_conf 103568889999999-72688899999
Q gi|254780593|r 160 IPGTSRSGATITGAL-ILGADKRSAAE 185 (266)
Q Consensus 160 iPGiSRSG~TI~~~l-~lG~~r~~A~~ 185 (266)
-=|..|+|+.+..-+ .+|++++++.+
T Consensus 100 ~~GkdRTG~v~a~~l~~~g~~~~~i~~ 126 (151)
T d1xria_ 100 KRGKHRTGCLVGCLRKLQKWCLTSIFD 126 (151)
T ss_dssp SSSSSHHHHHHHHHHHHTTBCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 898407899999999994999999999
No 11
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.69 E-value=18 Score=12.76 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHH-HC--CCHHHHHH
Q ss_conf 035688899999997-26--88899999
Q gi|254780593|r 161 PGTSRSGATITGALI-LG--ADKRSAAE 185 (266)
Q Consensus 161 PGiSRSG~TI~~~l~-lG--~~r~~A~~ 185 (266)
-|.+|||+.+++-+. .| .+-++|.+
T Consensus 113 ~G~gRSg~~~~ayL~~~~~~~~~~~al~ 140 (174)
T d1d5ra2 113 AGKGRTGVMICAYLLHRGKFLKAQEALD 140 (174)
T ss_dssp SSSHHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9913519999999999717899999999
No 12
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=20.56 E-value=8.7 Score=14.83 Aligned_cols=16 Identities=44% Similarity=0.683 Sum_probs=10.8
Q ss_pred HHHHHHHHCCHHHHHH
Q ss_conf 8998744210356888
Q gi|254780593|r 152 GLFQCIAMIPGTSRSG 167 (266)
Q Consensus 152 Gl~Q~lAliPGiSRSG 167 (266)
.+.|-+.-+.|.||||
T Consensus 5 sflqhickltglsrsg 20 (36)
T d1kcfa1 5 SFLQHICKLTGLSRSG 20 (36)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999852656355
No 13
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=20.28 E-value=19 Score=12.70 Aligned_cols=69 Identities=14% Similarity=-0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88987653112554234442014578310024555688999---9999632002444333202445477889987
Q gi|254780593|r 85 LFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFIL---LLVDRLKFESKYFHIENYPIPLAIKIGLFQC 156 (266)
Q Consensus 85 iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL---~~~d~~~~~~~~~~~~~~~~~~a~~IGl~Q~ 156 (266)
+++.++|.+++|...--++-..-.+....++...+++...- ...|+.++.++ .++.+.++|..-+.-+.
T Consensus 86 iv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~---~~g~~~~~Ai~~a~~~~ 157 (222)
T d1iwga8 86 SVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMD---KEGKGLIEATLDAVRMR 157 (222)
T ss_dssp HGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SSCCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHH
T ss_conf 9999999999999999998298613221003431033221688899997502010---14588777899999997
Done!