RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate
phosphatase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>gnl|CDD|178958 PRK00281, PRK00281, undecaprenyl pyrophosphate phosphatase;
           Reviewed.
          Length = 268

 Score =  235 bits (602), Expect = 9e-63
 Identities = 101/264 (38%), Positives = 163/264 (61%), Gaps = 8/264 (3%)

Query: 5   SIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLG--ADLGSSFIVLVQLGAVSALLYVYF 62
            ++ A+ILG+VEG+TEF+P+SST HL+LV  LLG   D G +F V++QLGA+ A++  + 
Sbjct: 4   DLLKAIILGIVEGLTEFLPISSTGHLILVGHLLGFEDDFGKTFDVVIQLGAILAVVVYFR 63

Query: 63  GRILSIFVSF----PFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITL 118
            R+  +              R   + + +   P  V G    +FIK  LF   I++ I L
Sbjct: 64  RRLWRLLGGSGKGGRGDREDRRLLLLVIVATIPAGVLGLLFKDFIKEHLF-SPIVVAIAL 122

Query: 119 IIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGA 178
           I+GG +LL  ++ K   +   +++     A+ IGL QC+A+IPGTSRSGATI+G L+LG 
Sbjct: 123 IVGGILLLWAEKRK-GPRVRSLDDLTYKDALLIGLAQCLALIPGTSRSGATISGGLLLGL 181

Query: 179 DKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQ 238
            + +AAEFSF +AIP ++GA +LD  K ++++       + +GF+ +F+ +L+ I+ L +
Sbjct: 182 SREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLK 241

Query: 239 VIAKRGYTPFALWRILIGFVGLFL 262
            I +  +TPFA++RI++G + L L
Sbjct: 242 YIKRHSFTPFAIYRIILGALLLIL 265


>gnl|CDD|183590 PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase;
           Reviewed.
          Length = 276

 Score =  182 bits (465), Expect = 7e-47
 Identities = 92/265 (34%), Positives = 145/265 (54%), Gaps = 11/265 (4%)

Query: 4   YSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADL-GSSFIVLVQLGAVSALLYVYF 62
            S+  A+ILG+V+G+TEF+PVSS+ HL +V  LLG D  G++F  ++QLG + A+L  + 
Sbjct: 1   MSLFKAIILGLVQGLTEFLPVSSSGHLRIVGALLGWDDPGAAFTAIIQLGTLLAVLLYFR 60

Query: 63  GRILSIFVSF--------PFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIII 114
             I+ I  +F        P + +   F   + +G  P  V G    + I+++L  ++ I+
Sbjct: 61  KDIIRIIKNFFSSLFGRKPKAKSDARFGWYIIIGTIPAGVLGLLFKDRIETVLR-DLRIV 119

Query: 115 HITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGAL 174
            I LI+ G +L L D L         E+     AI IGL Q +A+IPG SRSGATI   L
Sbjct: 120 AIALIVTGVLLWLADNLARNRGRKSDEDLTWKDAIIIGLAQALALIPGVSRSGATIIAGL 179

Query: 175 ILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIG-KEIIIGFMASFITSLLVI 233
           +LG  + +AA FSF +AIP + GA +L+ YK ++    +       + F+ +FI   + I
Sbjct: 180 LLGLTREAAARFSFLLAIPAVFGAGLLELYKIFHDPNASTLLGPTAVAFIVAFIVGYISI 239

Query: 234 RSLFQVIAKRGYTPFALWRILIGFV 258
                 + K     FA++RI++G +
Sbjct: 240 AWFMNFLKKGSLKYFAIYRIILGVL 264


>gnl|CDD|129836 TIGR00753, undec_PP_bacA, undecaprenyl-diphosphatase UppP.  This is
           a family of small, highly hydrophobic proteins.
           Overexpression of this protein in Escherichia coli is
           associated with bacitracin resistance, and the protein
           was originally proposed to be an undecaprenol kinase and
           called bacA. It is now known to be an undecaprenyl
           pyrophosphate phosphatase (EC 3.6.1.27) and is renamed
           UppP.
          Length = 255

 Score =  161 bits (410), Expect = 1e-40
 Identities = 92/255 (36%), Positives = 158/255 (61%), Gaps = 7/255 (2%)

Query: 9   ALILGVVEGVTEFIPVSSTAHLLLVSRLLGA-DLGSSFIVLVQLGAVSALLYVYFGRILS 67
           A+ILG+V+G+TEF+P+SST HL++V  +LG+ D G SF +++QLG++ A++  ++ RIL 
Sbjct: 1   AIILGIVQGLTEFLPISSTGHLIIVRHILGSGDAGKSFTIVIQLGSILAVVIYFWRRILR 60

Query: 68  IFVSF------PFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIG 121
           +   +         ++       + LG  PTVV G    + IKS+LF  ++ + I LI+G
Sbjct: 61  LLGIWIRFSTRKTESSDLLLLKLILLGLIPTVVLGLLFKDLIKSLLFNFLLTVVIALIVG 120

Query: 122 GFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKR 181
             +L+L + +  ++     E   +  AI +GLFQC+A+IPG SRSG+TI+G L +G +++
Sbjct: 121 AGLLILAEEVNRQTLKRDFERLTLRDAIMMGLFQCLALIPGVSRSGSTISGGLFIGLNRK 180

Query: 182 SAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVIA 241
           +AAEFSF +AIP + GA +L   K+++   +    E+I+GF+ +F+ +L  I    + + 
Sbjct: 181 AAAEFSFLLAIPIMFGAGLLSLKKSWDSFTSGDFPELIVGFITAFVVALFAIAWFLKFLN 240

Query: 242 KRGYTPFALWRILIG 256
           K     F ++R ++G
Sbjct: 241 KHSLYIFVIYRFILG 255


>gnl|CDD|117022 pfam08445, FR47, FR47-like protein.  The members of this family are
           similar to the C-terminal region of the D. melanogaster
           hypothetical protein FR47. This protein has been found
           to consist of two N-acyltransferase-like domains swapped
           with the C-terminal strands.
          Length = 86

 Score = 28.4 bits (64), Expect = 1.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 230 LLVIRSLFQVIAKRGYTPFALWRI 253
             ++ +L + IA+RG TPFA+   
Sbjct: 40  SRLVAALARGIAERGITPFAVVVA 63


>gnl|CDD|180888 PRK07213, PRK07213, chlorohydrolase; Provisional.
          Length = 375

 Score = 28.1 bits (63), Expect = 2.5
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 168 ATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKN-YNVIVNNIGKEIIIGFM 223
           ATI GA ILG       E   F A  T I    + F KN Y  I+       I+  +
Sbjct: 315 ATINGAKILGLINVGLIEEG-FKADFTFIKPTNIKFSKNPYASIITRCESGDIVNKI 370


>gnl|CDD|130962 TIGR01907, casE_Cse3, CRISPR system CASCADE complex protein
           CasE/Cse3.  The representative of this family from
           Thermus thermophilus HB8 (TTHB192) has been crystallized
           and found to have a structure consisting of two domains
           with opposing parallel beta-sheets known as a beta-sheet
           platform. This structure is similar to those found in
           the Sex-lethal protein and poly(A)-binding protein. This
           structure is consistent with an RNA-binding function.
          Length = 207

 Score = 27.2 bits (60), Expect = 4.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 121 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQC 156
           GG  L+L  R   +  +F IE  P+P  +  G F  
Sbjct: 53  GGKFLILSARPPLQPAHFEIETRPVPPELLQGRFLK 88


>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
           SecD/SecF; Reviewed.
          Length = 755

 Score = 27.1 bits (61), Expect = 5.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 218 IIIGFMASFITSLLVIRSLFQVIAKRGYTPFALWRI 253
           +IIG +AS  T++ + R L +++ KRG     L+ +
Sbjct: 396 LIIGILASLFTAVFLTRLLLELLVKRGDKKPFLFGV 431


>gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
          Length = 1000

 Score = 26.1 bits (58), Expect = 8.6
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 74  FSAAARHFTITLFLGFFPTVVCGFFAYNFI---KSILFKEMI 112
             A  R       L   P V+ G F   F+   K +L  EM+
Sbjct: 557 AIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMV 598


>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional.
          Length = 453

 Score = 26.0 bits (57), Expect = 9.4
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 77  AARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHIT-----LIIGGFILLLVDRL 131
             + F I L++  F  +  G F Y F   +  K   I  I        IG  I    DR+
Sbjct: 35  IQKLFQI-LYVTVFIVLAGGLFYYIFENVVFQKNRKINEIIKTSKHSTIGFNIENSHDRI 93

Query: 132 KFESKYFHIENY 143
               K   ++NY
Sbjct: 94  MKTIKEHKLKNY 105


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.335    0.151    0.445 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,529,106
Number of extensions: 310970
Number of successful extensions: 1469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 130
Length of query: 266
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,006,537
Effective search space: 697137438
Effective search space used: 697137438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.3 bits)