RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >gnl|CDD|178958 PRK00281, PRK00281, undecaprenyl pyrophosphate phosphatase; Reviewed. Length = 268 Score = 235 bits (602), Expect = 9e-63 Identities = 101/264 (38%), Positives = 163/264 (61%), Gaps = 8/264 (3%) Query: 5 SIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLG--ADLGSSFIVLVQLGAVSALLYVYF 62 ++ A+ILG+VEG+TEF+P+SST HL+LV LLG D G +F V++QLGA+ A++ + Sbjct: 4 DLLKAIILGIVEGLTEFLPISSTGHLILVGHLLGFEDDFGKTFDVVIQLGAILAVVVYFR 63 Query: 63 GRILSIFVSF----PFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITL 118 R+ + R + + + P V G +FIK LF I++ I L Sbjct: 64 RRLWRLLGGSGKGGRGDREDRRLLLLVIVATIPAGVLGLLFKDFIKEHLF-SPIVVAIAL 122 Query: 119 IIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGA 178 I+GG +LL ++ K + +++ A+ IGL QC+A+IPGTSRSGATI+G L+LG Sbjct: 123 IVGGILLLWAEKRK-GPRVRSLDDLTYKDALLIGLAQCLALIPGTSRSGATISGGLLLGL 181 Query: 179 DKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQ 238 + +AAEFSF +AIP ++GA +LD K ++++ + +GF+ +F+ +L+ I+ L + Sbjct: 182 SREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLK 241 Query: 239 VIAKRGYTPFALWRILIGFVGLFL 262 I + +TPFA++RI++G + L L Sbjct: 242 YIKRHSFTPFAIYRIILGALLLIL 265 >gnl|CDD|183590 PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed. Length = 276 Score = 182 bits (465), Expect = 7e-47 Identities = 92/265 (34%), Positives = 145/265 (54%), Gaps = 11/265 (4%) Query: 4 YSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADL-GSSFIVLVQLGAVSALLYVYF 62 S+ A+ILG+V+G+TEF+PVSS+ HL +V LLG D G++F ++QLG + A+L + Sbjct: 1 MSLFKAIILGLVQGLTEFLPVSSSGHLRIVGALLGWDDPGAAFTAIIQLGTLLAVLLYFR 60 Query: 63 GRILSIFVSF--------PFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIII 114 I+ I +F P + + F + +G P V G + I+++L ++ I+ Sbjct: 61 KDIIRIIKNFFSSLFGRKPKAKSDARFGWYIIIGTIPAGVLGLLFKDRIETVLR-DLRIV 119 Query: 115 HITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGAL 174 I LI+ G +L L D L E+ AI IGL Q +A+IPG SRSGATI L Sbjct: 120 AIALIVTGVLLWLADNLARNRGRKSDEDLTWKDAIIIGLAQALALIPGVSRSGATIIAGL 179 Query: 175 ILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIG-KEIIIGFMASFITSLLVI 233 +LG + +AA FSF +AIP + GA +L+ YK ++ + + F+ +FI + I Sbjct: 180 LLGLTREAAARFSFLLAIPAVFGAGLLELYKIFHDPNASTLLGPTAVAFIVAFIVGYISI 239 Query: 234 RSLFQVIAKRGYTPFALWRILIGFV 258 + K FA++RI++G + Sbjct: 240 AWFMNFLKKGSLKYFAIYRIILGVL 264 >gnl|CDD|129836 TIGR00753, undec_PP_bacA, undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP. Length = 255 Score = 161 bits (410), Expect = 1e-40 Identities = 92/255 (36%), Positives = 158/255 (61%), Gaps = 7/255 (2%) Query: 9 ALILGVVEGVTEFIPVSSTAHLLLVSRLLGA-DLGSSFIVLVQLGAVSALLYVYFGRILS 67 A+ILG+V+G+TEF+P+SST HL++V +LG+ D G SF +++QLG++ A++ ++ RIL Sbjct: 1 AIILGIVQGLTEFLPISSTGHLIIVRHILGSGDAGKSFTIVIQLGSILAVVIYFWRRILR 60 Query: 68 IFVSF------PFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIG 121 + + ++ + LG PTVV G + IKS+LF ++ + I LI+G Sbjct: 61 LLGIWIRFSTRKTESSDLLLLKLILLGLIPTVVLGLLFKDLIKSLLFNFLLTVVIALIVG 120 Query: 122 GFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKR 181 +L+L + + ++ E + AI +GLFQC+A+IPG SRSG+TI+G L +G +++ Sbjct: 121 AGLLILAEEVNRQTLKRDFERLTLRDAIMMGLFQCLALIPGVSRSGSTISGGLFIGLNRK 180 Query: 182 SAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVIA 241 +AAEFSF +AIP + GA +L K+++ + E+I+GF+ +F+ +L I + + Sbjct: 181 AAAEFSFLLAIPIMFGAGLLSLKKSWDSFTSGDFPELIVGFITAFVVALFAIAWFLKFLN 240 Query: 242 KRGYTPFALWRILIG 256 K F ++R ++G Sbjct: 241 KHSLYIFVIYRFILG 255 >gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are similar to the C-terminal region of the D. melanogaster hypothetical protein FR47. This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. Length = 86 Score = 28.4 bits (64), Expect = 1.8 Identities = 9/24 (37%), Positives = 15/24 (62%) Query: 230 LLVIRSLFQVIAKRGYTPFALWRI 253 ++ +L + IA+RG TPFA+ Sbjct: 40 SRLVAALARGIAERGITPFAVVVA 63 >gnl|CDD|180888 PRK07213, PRK07213, chlorohydrolase; Provisional. Length = 375 Score = 28.1 bits (63), Expect = 2.5 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 168 ATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKN-YNVIVNNIGKEIIIGFM 223 ATI GA ILG E F A T I + F KN Y I+ I+ + Sbjct: 315 ATINGAKILGLINVGLIEEG-FKADFTFIKPTNIKFSKNPYASIITRCESGDIVNKI 370 >gnl|CDD|130962 TIGR01907, casE_Cse3, CRISPR system CASCADE complex protein CasE/Cse3. The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function. Length = 207 Score = 27.2 bits (60), Expect = 4.3 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 121 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQC 156 GG L+L R + +F IE P+P + G F Sbjct: 53 GGKFLILSARPPLQPAHFEIETRPVPPELLQGRFLK 88 >gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed. Length = 755 Score = 27.1 bits (61), Expect = 5.0 Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 218 IIIGFMASFITSLLVIRSLFQVIAKRGYTPFALWRI 253 +IIG +AS T++ + R L +++ KRG L+ + Sbjct: 396 LIIGILASLFTAVFLTRLLLELLVKRGDKKPFLFGV 431 >gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional. Length = 1000 Score = 26.1 bits (58), Expect = 8.6 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%) Query: 74 FSAAARHFTITLFLGFFPTVVCGFFAYNFI---KSILFKEMI 112 A R L P V+ G F F+ K +L EM+ Sbjct: 557 AIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMV 598 >gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional. Length = 453 Score = 26.0 bits (57), Expect = 9.4 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 77 AARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHIT-----LIIGGFILLLVDRL 131 + F I L++ F + G F Y F + K I I IG I DR+ Sbjct: 35 IQKLFQI-LYVTVFIVLAGGLFYYIFENVVFQKNRKINEIIKTSKHSTIGFNIENSHDRI 93 Query: 132 KFESKYFHIENY 143 K ++NY Sbjct: 94 MKTIKEHKLKNY 105 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.335 0.151 0.445 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,529,106 Number of extensions: 310970 Number of successful extensions: 1469 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1433 Number of HSP's successfully gapped: 130 Length of query: 266 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 174 Effective length of database: 4,006,537 Effective search space: 697137438 Effective search space used: 697137438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 56 (25.3 bits)