RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate
phosphatase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 27.4 bits (61), Expect = 2.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 227 ITSLLVIRSLFQVIAKRGYT 246
           +  ++ I SL +V+  RG T
Sbjct: 2   LADVMSIESLVEVVFYRGMT 21


>3knz_A Putative sugar binding protein; structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI-2; 2.50A {Salmonella enterica subsp}
           (A:34-182)
          Length = 149

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 5/35 (14%), Positives = 14/35 (40%)

Query: 209 VIVNNIGKEIIIGFMASFITSLLVIRSLFQVIAKR 243
           ++    G+E        +  ++L +  L   +A +
Sbjct: 112 ILTVPCGEETAGAKTKGYHCTVLNLXLLALAVAGQ 146


>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 1.50A {Listeria monocytogenes str} (A:27-183)
          Length = 157

 Score = 27.1 bits (59), Expect = 2.8
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 209 VIVNNIGKEIIIGFMASFITSLLVIRSLFQVIAKR 243
            +    GKE +      F  ++L +       A +
Sbjct: 120 TLDIGSGKERVGYVTKGFTATVLTLXLTGLHFAYK 154


>1moq_A Glucosamine 6-phosphate synthase; glutamine
           amidotransferase; HET: GLP MES; 1.57A {Escherichia coli}
           (A:1-210)
          Length = 210

 Score = 25.6 bits (55), Expect = 6.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 210 IVNNIGKEIIIGFMASFITSLLVIRSLFQVIAKR 243
           ++ N G EI +    +F T L V+  L   +++ 
Sbjct: 149 LMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRL 182


>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase
           [isomerizing] 1; glucosamine-6-phosphate synthase,
           aldose/ketose isomerase, rossmann-like fold; HET: G6P;
           1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:1-216)
          Length = 216

 Score = 25.6 bits (55), Expect = 8.0
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 164 SRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFM 223
           S+SG T    + L   K   A             +   D   + N      G EI +   
Sbjct: 115 SQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINA-----GPEIGVAST 169

Query: 224 ASFITSLLVIRSLFQVIAKR 243
            ++ +  + +     ++   
Sbjct: 170 KAYTSQFVSLVMFALMMCDD 189


>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6-
           phosphate transaminase (isomerizing);
           glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A
           {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A*
           (A:1-206)
          Length = 206

 Score = 25.2 bits (54), Expect = 8.2
 Identities = 4/35 (11%), Positives = 13/35 (37%)

Query: 209 VIVNNIGKEIIIGFMASFITSLLVIRSLFQVIAKR 243
            +  N G EI +    ++ +  + +      ++  
Sbjct: 145 GVHINAGPEIGVASTKAYTSQYIALVMFALSLSND 179


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.335    0.151    0.445 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,007,214
Number of extensions: 86884
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 22
Length of query: 266
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 179
Effective length of database: 2,015,014
Effective search space: 360687506
Effective search space used: 360687506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 54 (25.0 bits)