RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 54.6 bits (131), Expect = 2e-08 Identities = 46/250 (18%), Positives = 74/250 (29%), Gaps = 92/250 (36%) Query: 7 IIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYVYF---- 62 ++ L L E ++ + H L ++LL + + L L+ Y Sbjct: 83 VLNLCLTEFE--NCYLE-GNDIHAL-AAKLLQENDTT-------LVKTKELIKNYITARI 131 Query: 63 ---GRILSIFVSFPFSAAA-RHFTI-TLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHIT 117 S F A + + +F G T F+E+ ++ T Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY------------FEELRDLYQT 179 Query: 118 L--IIGGFILLLVDRL-----------KFESKYFHI------------ENY----PI--P 146 ++G I + L K ++ +I ++Y PI P Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239 Query: 147 LAIKIGLFQ-------CIAM--IPGTSR---SGAT------ITGALILGADK-------- 180 L IG+ Q + PG R GAT +T I D Sbjct: 240 L---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296 Query: 181 RSAAEFSFFI 190 R A FFI Sbjct: 297 RKAITVLFFI 306 Score = 29.9 bits (67), Expect = 0.61 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 30/97 (30%) Query: 18 VTEFIPVSS---TAHLLLVSRLLGADLGSSFIVLVQLGAVSALLY-VY--F-GR------ 64 F+PV+S + L+ S L+ DL + + + VY F G Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF----NAKDIQIPVYDTFDGSDLRVLS 472 Query: 65 --ILS-----IF---VSFPFSAAARHFTITLFLGFFP 91 I I V + F T L F P Sbjct: 473 GSISERIVDCIIRLPVKWE---TTTQFKATHILDFGP 506 >3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484 Score = 27.7 bits (61), Expect = 3.0 Identities = 16/75 (21%), Positives = 28/75 (37%) Query: 160 IPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEII 219 +PG S A + G D A ++ + V D Y YN G+++ Sbjct: 237 VPGYSVPAAEHSTITAWGKDHEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLR 296 Query: 220 IGFMASFITSLLVIR 234 ++ + L+IR Sbjct: 297 HLIVSRSTQAPLIIR 311 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.335 0.151 0.445 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,318,664 Number of extensions: 106067 Number of successful extensions: 397 Number of sequences better than 10.0: 1 Number of HSP's gapped: 395 Number of HSP's successfully gapped: 22 Length of query: 266 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 175 Effective length of database: 3,487,026 Effective search space: 610229550 Effective search space used: 610229550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 56 (25.7 bits)