BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate
phosphatase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 266

 Score =  516 bits (1330), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYV 60
           MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYV
Sbjct: 1   MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYV 60

Query: 61  YFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLII 120
           YFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLII
Sbjct: 61  YFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLII 120

Query: 121 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADK 180
           GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADK
Sbjct: 121 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADK 180

Query: 181 RSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVI 240
           RSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVI
Sbjct: 181 RSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVI 240

Query: 241 AKRGYTPFALWRILIGFVGLFLEIFP 266
           AKRGYTPFALWRILIGFVGLFLEIFP
Sbjct: 241 AKRGYTPFALWRILIGFVGLFLEIFP 266


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 24.3 bits (51), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 14  VVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYVY 61
           V + +TE +P+S+  +  +V   +  +L    IV V + A++ L+Y++
Sbjct: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.335    0.151    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,006
Number of Sequences: 1233
Number of extensions: 6727
Number of successful extensions: 41
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 9
length of query: 266
length of database: 328,796
effective HSP length: 72
effective length of query: 194
effective length of database: 240,020
effective search space: 46563880
effective search space used: 46563880
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 37 (18.9 bits)