BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 516 bits (1330), Expect = e-148, Method: Compositional matrix adjust. Identities = 266/266 (100%), Positives = 266/266 (100%) Query: 1 MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYV 60 MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYV Sbjct: 1 MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYV 60 Query: 61 YFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLII 120 YFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLII Sbjct: 61 YFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLII 120 Query: 121 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADK 180 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADK Sbjct: 121 GGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADK 180 Query: 181 RSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVI 240 RSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVI Sbjct: 181 RSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVI 240 Query: 241 AKRGYTPFALWRILIGFVGLFLEIFP 266 AKRGYTPFALWRILIGFVGLFLEIFP Sbjct: 241 AKRGYTPFALWRILIGFVGLFLEIFP 266 >gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] Length = 833 Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 28/48 (58%) Query: 14 VVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYVY 61 V + +TE +P+S+ + +V + +L IV V + A++ L+Y++ Sbjct: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.335 0.151 0.445 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 163,006 Number of Sequences: 1233 Number of extensions: 6727 Number of successful extensions: 41 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 9 length of query: 266 length of database: 328,796 effective HSP length: 72 effective length of query: 194 effective length of database: 240,020 effective search space: 46563880 effective search space used: 46563880 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 37 (18.9 bits)