HHsearch alignment for GI: 254780594 and conserved domain: cd03186
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.37 E-value=6.2e-12 Score=87.80 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999998612342577899998877664212210233439999999999999985565453479842667502
Q gi|254780594|r 89 PLQRAETRRMIEWFMYQMEQDVTRPLAHERVYKLHMTTEQGGGSPDSKVLRIARNNMREHIKYITWLIKSRSWIAGHHMS 168 (230)
Q Consensus 89 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~~fl~Gd~~s 168 (230)
T Consensus 1 Pv~RA~~Rl~~~RIe~dwy~---------l~~~i~----~----~~~k~~~~ark~L~e~L~~l~p~F~~~pyFmsdEFs 63 (107)
T cd03186 1 PVARARSRLLMHRIEQDWYP---------LVDTIE----K----GRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFS 63 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHH---------HHHHHH----C----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 93789999999999999999---------999998----4----986789999999999999999998048440226520
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 89999999999999618999456768899999997099889841
Q gi|254780594|r 169 YADFAASATISILDYLGEIDWDTAPIVKEWYQRMKSRPSFRPLL 212 (230)
Q Consensus 169 ~ADi~~~~~l~~~~~~~~~~~~~~p~l~~w~~r~~~rps~~~~l 212 (230)
T Consensus 64 lvDc~laPlLWRL~~lgI~Lp~~~k~l~~Y~~RiF~R~sF~~SL 107 (107)
T cd03186 64 LVDCALAPLLWRLPALGIELPKQAKPLKDYMERVFARDSFQKSL 107 (107)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHC
T ss_conf 88999989999701227237975438999999985809889629