HHsearch alignment for GI: 254780595 and conserved domain: COG1090
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].
Probab=100.00 E-value=4.5e-40 Score=248.17 Aligned_cols=272 Identities=19% Similarity=0.241 Sum_probs=207.5
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHC-CCCEEEEEECCCCCCC-
Q ss_conf 999888-8889999999998898899996794463455644982898067864023465411-5632787612444331-
Q gi|254780595|r 3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLREKLY-FTTHIVQCIKPSSEGD- 79 (289)
Q Consensus 3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~- 79 (289)
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~--~~------~~~~~~~~~~~DavINLAG~~I~~rr 72 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVT--LW------EGLADALTLGIDAVINLAGEPIAERR 72 (297)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCC--CC------CHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 95735665016899999984898699997478502332476533--43------01244036787789988898154465
Q ss_pred -----------EEEC---CCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf -----------0001---22101344320123343333201025762123453211234311345544555543200123
Q gi|254780595|r 80 -----------PCII---SMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWLAITKK 145 (289)
Q Consensus 80 -----------~~~~---~~~~~~~~~~~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k~~~E~~~~~~~~~ 145 (289)
T Consensus 73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~-g~~Fla~lc~~WE~~a~~a-~~ 150 (297)
T COG1090 73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP-GDDFLAQLCQDWEEEALQA-QQ 150 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHH-HH
T ss_conf 788999999997768999999999852679808985245777558886464157888-7775999999999998666-40
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHH----HCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCC-CCCCCEECCCCCHHHHHH
Q ss_conf 456764203477778985034443----113454322211000102477779999999513-557861626843333899
Q gi|254780595|r 146 LNIKLAVLRLSGIYGPKRNPFIKI----RQKNSLRLVKKNQVFNRIRVEDVARCVIFLMTH-HLGGIFNLSDDEPAPPQN 220 (289)
Q Consensus 146 ~~~~~~ilR~~~iyGp~r~~~~~~----~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l~~~-~~~~iyni~~~~~~s~~e 220 (289)
T Consensus 151 ~gtRvvllRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~taP~PV~~~~ 230 (297)
T COG1090 151 LGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFNLTAPNPVRNKE 230 (297)
T ss_pred CCCEEEEEEEEEEECCCCCCHHHHCCHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 68469999887786178860343101355225771589873034332999999999998475777751035898672899
Q ss_pred HHHHHHHHHCCCCCCCCCCC--CCCCCHHHHHHHCCCCEECHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999557998634310--125682446553069451689999739844899999999999997
Q gi|254780595|r 221 VIMEAASLMKITPPLEQCFD--TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKE 285 (289)
Q Consensus 221 ~~~~i~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~is~~kl~~lG~~p~~p~~~~gl~~~~~~ 285 (289)
T Consensus 231 F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~-lL~gQrvlP~kl~~aGF~F~y~dl~~AL~~il~~ 296 (297)
T COG1090 231 FAHALGRALHRPAILPVPSFALRLLLGEMADL-LLGGQRVLPKKLEAAGFQFQYPDLEEALADILKR 296 (297)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHC
T ss_conf 99999998679953569389999985225898-8636034479998779816657799999999726