HHsearch alignment for GI: 254780595 and conserved domain: TIGR01830
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=98.60 E-value=8.4e-07 Score=58.33 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=109.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCHH-HH----HHHHHCCCEE--EECCCCCCC---H---HHHHHHCCCCEE
Q ss_conf 999888-88899999999988988999967944-63----4556449828--980678640---2---346541156327
Q gi|254780595|r 3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRSVS-NL----LTLKHKGISP--FLFADQKIN---N---LLREKLYFTTHI 68 (289)
Q Consensus 3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~-~~----~~l~~~~~~~--~~~~~~~~~---~---~~~~~~~~~~~v 68 (289)
T Consensus 1 AlVTGasRGIG~AIA~~LA~~Ga~V~i~y~~~e~~~~~~~~e~~~~G~~a~~~~~dvs~~~~~~~~~~~~~~~~G-iDiL 79 (238)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRTSEEGAEEVVEEIKELGVKAAGVVLDVSDREDVKALVEEAEEELG-IDIL 79 (238)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-CEEE
T ss_conf 967167861679999999867995999659825788899999985697599996038888999999999999829-9089
Q ss_pred EEEECCCCC----------CCEEECCCCCHHHHHH---------HCCCCCCCCCCE-EECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 876124443----------3100012210134432---------012334333320-10257621234532112343113
Q gi|254780595|r 69 VQCIKPSSE----------GDPCIISMSKDFYKFM---------PHVKWIGYLSST-SIYGNREGQWVDEHSFVHPISCV 128 (289)
Q Consensus 69 ~~~~~~~~~----------~~~~~~~~~~~~~~~~---------~~~~~~i~~SS~-~VYg~~~g~~i~E~~~~~P~~~y 128 (289)
T Consensus 80 VNNAGITrD~Ll~RMk~edWd~Vi~~NL~g~F~~t~~v~~~M~K~R~GrIINisSVVG~~GN~------------GQaNY 147 (238)
T TIGR01830 80 VNNAGITRDNLLMRMKEEDWDAVINVNLKGVFNLTQAVLRPMIKQRSGRIINISSVVGLMGNA------------GQANY 147 (238)
T ss_pred EECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCC------------CHHHH
T ss_conf 978741343010048855689999861266878889988988750674348610020000687------------42678
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CHHHH---------HHCCCCCCCCCCCCEECCHHHHHHHHHHH
Q ss_conf 45544555543200123456764203477778985--03444---------31134543222110001024777799999
Q gi|254780595|r 129 ATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKR--NPFIK---------IRQKNSLRLVKKNQVFNRIRVEDVARCVI 197 (289)
Q Consensus 129 ~~~k~~~E~~~~~~~~~~~~~~~ilR~~~iyGp~r--~~~~~---------~~~g~~~~~~~~~~~~~~ihv~Dva~~i~ 197 (289)
T Consensus 148 aASKAG~IGftKSlAkElasR--nIt-VNaVAPGFI~TdMT~~L~e~~~~~~l~~IPLgR~--G------~pEeVA~~v~ 216 (238)
T TIGR01830 148 AASKAGVIGFTKSLAKELASR--NIT-VNAVAPGFIETDMTDKLSEKVKKAMLSQIPLGRF--G------TPEEVANAVA 216 (238)
T ss_pred HHHHHHHHHHHHHHHHHCCCC--CCE-EEEECCCCCCCCCCHHCCHHHHHHHHHCCCCCCC--C------CHHHHHHHHH
T ss_conf 888755899999999860368--705-8887489989700021698899999852772326--7------7656999999
Q ss_pred HHHCCC----CCCCEECCCC
Q ss_conf 995135----5786162684
Q gi|254780595|r 198 FLMTHH----LGGIFNLSDD 213 (289)
Q Consensus 198 ~l~~~~----~~~iyni~~~ 213 (289)
T Consensus 217 FLASd~AsYITGqv~~VdGG 236 (238)
T TIGR01830 217 FLASDEASYITGQVIHVDGG 236 (238)
T ss_pred HHCCCCCCCCCCCEEECCCC
T ss_conf 73251247425516630687