HHsearch alignment for GI: 254780595 and conserved domain: TIGR01963
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=97.72 E-value=0.0015 Score=39.71 Aligned_cols=195 Identities=19% Similarity=0.153 Sum_probs=109.2
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECC--HHHHHH----HHHCCCEE-EECCCCCCCHHHH-------HHHCCCCE
Q ss_conf 999888-888999999999889889999679--446345----56449828-9806786402346-------54115632
Q gi|254780595|r 3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRS--VSNLLT----LKHKGISP-FLFADQKINNLLR-------EKLYFTTH 67 (289)
Q Consensus 3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~--~~~~~~----l~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~ 67 (289)
T Consensus 4 alVTGaaSGIG~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~fG~~Di 83 (258)
T TIGR01963 4 ALVTGAASGIGLAIAKALAAAGANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEFGGLDI 83 (258)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 99965871678999999987298899846788789999999999961883577514788889999999999998568874
Q ss_pred EEEEEC-----CCCCC-----CEEEC-CCC---CHHHHHHHC-----CC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 787612-----44433-----10001-221---013443201-----23-343333201025762123453211234311
Q gi|254780595|r 68 IVQCIK-----PSSEG-----DPCII-SMS---KDFYKFMPH-----VK-WIGYLSSTSIYGNREGQWVDEHSFVHPISC 127 (289)
Q Consensus 68 v~~~~~-----~~~~~-----~~~~~-~~~---~~~~~~~~~-----~~-~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~ 127 (289)
T Consensus 84 LVNNAG~QhVaPiEeFP~~~w~~iiav~LtsaF~t~raAlP~Mk~~gwGGRIiNIAS~--HGL-------vASp~K--SA 152 (258)
T TIGR01963 84 LVNNAGIQHVAPIEEFPPEKWDRIIAVMLTSAFHTIRAALPHMKKQGWGGRIINIASV--HGL-------VASPFK--SA 152 (258)
T ss_pred EEECCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEE--CCC-------CCCCCH--HH
T ss_conf 8844640141765477866787373021688899997506432137855379971010--000-------035321--34
Q ss_pred HH--------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHC-CCC------CCCCCCCCEECCHHHH
Q ss_conf 34--------55445555432001234567642034777789--8503444311-345------4322211000102477
Q gi|254780595|r 128 VA--------TQRFNAEKEWLAITKKLNIKLAVLRLSGIYGP--KRNPFIKIRQ-KNS------LRLVKKNQVFNRIRVE 190 (289)
Q Consensus 128 y~--------~~k~~~E~~~~~~~~~~~~~~~ilR~~~iyGp--~r~~~~~~~~-g~~------~~~~~~~~~~~~ihv~ 190 (289)
T Consensus 153 YVAAKHG~~GLTKv~A----LE-~A~~giT~NaiCPGYV~TPLV~~Qi~DqAk~rGi~eE~V~~~VmL~~~P~k~F~~~~ 227 (258)
T TIGR01963 153 YVAAKHGLIGLTKVLA----LE-VAAHGITANAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLKKQPTKRFVTVD 227 (258)
T ss_pred HHHHHHHHHHHHHHHH----HH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 5677430212115555----42-047887586672875675546765899986518899888898607888984113799
Q ss_pred HHHHHHHHHHCCC----CCCCEECCCC
Q ss_conf 7799999995135----5786162684
Q gi|254780595|r 191 DVARCVIFLMTHH----LGGIFNLSDD 213 (289)
Q Consensus 191 Dva~~i~~l~~~~----~~~iyni~~~ 213 (289)
T Consensus 228 e~A~~a~fLaS~~A~~~TG~~~~~DGG 254 (258)
T TIGR01963 228 EVAETALFLASDAAAGITGQAIVLDGG 254 (258)
T ss_pred HHHHHHHHHCCHHHHCCCCEEEEECCC
T ss_conf 999999984173442366207886484