HHsearch alignment for GI: 254780595 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=100.00 E-value=0 Score=298.70 Aligned_cols=282 Identities=17% Similarity=0.166 Sum_probs=207.5
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCC--
Q ss_conf 93999888-888999999999889889999679446345564498289806786402346541156327876124443--
Q gi|254780595|r 1 MHLMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLREKLYFTTHIVQCIKPSSE-- 77 (289)
Q Consensus 1 MkIlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 77 (289)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl~-d~~~~~~~~~~~d~ViH~Aa~~~~~~ 79 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDLR-DPASLRKALAGCRALFHVAADYRLWA 79 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECC-CHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 94999867779999999999978498999989998655652179779982079-99999999717858976134234467
Q ss_pred CCE-----EECCCCCHHH--HHHHCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCC
Q ss_conf 310-----0012210134--4320123343333201025762-1234532112343---113455445555432001234
Q gi|254780595|r 78 GDP-----CIISMSKDFY--KFMPHVKWIGYLSSTSIYGNRE-GQWVDEHSFVHPI---SCVATQRFNAEKEWLAITKKL 146 (289)
Q Consensus 78 ~~~-----~~~~~~~~~~--~~~~~~~~~i~~SS~~VYg~~~-g~~i~E~~~~~P~---~~y~~~k~~~E~~~~~~~~~~ 146 (289)
T Consensus 80 ~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~ 159 (328)
T TIGR03466 80 PDPEEMYRANVEGTRNLLRAALEAGVERVVYTSSVATLGVPGDGTPADETTPSSLEKMIGHYKRSKFLAEEAALRMIAEK 159 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99899999999999999999997298743156335785578888740256765456665778899999999999999972
Q ss_pred CCCCCCCCCCCCCCCCCC-------HHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCC-CCCCEECCCCCHHHH
Q ss_conf 567642034777789850-------344431134543222110001024777799999995135-578616268433338
Q gi|254780595|r 147 NIKLAVLRLSGIYGPKRN-------PFIKIRQKNSLRLVKKNQVFNRIRVEDVARCVIFLMTHH-LGGIFNLSDDEPAPP 218 (289)
Q Consensus 147 ~~~~~ilR~~~iyGp~r~-------~~~~~~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l~~~~-~~~iyni~~~~~~s~ 218 (289)
T Consensus 160 gl~~~ilRp~~v~Gp~d~~~~~~~~~i~~~~~~~~p~~~~--~g~~~v~V~Dva~a~~~a~~~~~~g~~y~~~-~~~~t~ 236 (328)
T TIGR03466 160 GLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLRGKMPAYVD--TGLNLVHVDDVAEGHLLALERGRIGERYILG-GENLTL 236 (328)
T ss_pred CCCEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCEEEC--CCCEEEEEHHHHHHHHHHHHCCCCCCEEEEC-CCCCCH
T ss_conf 9975997778568899888876699999997599976755--8718998389999999997579989879979-997109
Q ss_pred HHHHHHHHHHHCCCCCCC-CCCCC--------------CCCCHHH----HHHHCCCCEECHHHHH-HCCCCCCCCCHHHH
Q ss_conf 999999999955799863-43101--------------2568244----6553069451689999-73984489999999
Q gi|254780595|r 219 QNVIMEAASLMKITPPLE-QCFDT--------------ANISPFT----RFFYADNKRISNAKIK-SLGFQLLYPNYRIS 278 (289)
Q Consensus 219 ~e~~~~i~~~~g~~~~~~-~~~~~--------------~~~~~~~----~~~~~~~~~is~~kl~-~lG~~p~~p~~~~g 278 (289)
T Consensus 237 ~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~d~~kA~~~LG~~p~--~~eeg 314 (328)
T TIGR03466 237 AQILAKLAEITGRKAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTLDGVRMAKKKMYFSSDKAVRELGYRQR--PAREA 314 (328)
T ss_pred HHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCC--CHHHH
T ss_conf 9999999998589987110573788888999999887419998764677764156631177999998299978--89999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997513
Q gi|254780595|r 279 LKQLWKEIEN 288 (289)
Q Consensus 279 l~~~~~~~~~ 288 (289)
T Consensus 315 l~~tv~W~~~ 324 (328)
T TIGR03466 315 LRDAVEWFRA 324 (328)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998