HHsearch alignment for GI: 254780595 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=100.00 E-value=0 Score=283.14 Aligned_cols=259 Identities=16% Similarity=0.194 Sum_probs=184.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHC--CCCEEEEEECCCC---
Q ss_conf 999888-8889999999998898899996794463455644982898067864023465411--5632787612444---
Q gi|254780595|r 3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLREKLY--FTTHIVQCIKPSS--- 76 (289)
Q Consensus 3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~--- 76 (289)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~~~---------------D~~-d~~~l~~~~~~~~pd~VihlAa~~~~~~ 64 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGVEVVALDRPEL---------------DLT-DPEAVAALVREARPDVVVNAAAYTAVDK 64 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCC---------------CCC-CHHHHHHHHHHCCCCEEEECCCCCCCHH
T ss_conf 699648998999999999868998999548625---------------788-9999999998649979997241355567
Q ss_pred -CCCEE-----ECCCCCHHHHH-HHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -33100-----01221013443-201233433332010257621234532112343113455445555432001234567
Q gi|254780595|r 77 -EGDPC-----IISMSKDFYKF-MPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWLAITKKLNIK 149 (289)
Q Consensus 77 -~~~~~-----~~~~~~~~~~~-~~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k~~~E~~~~~~~~~~~~~ 149 (289)
T Consensus 65 ~~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~----~ 140 (284)
T pfam04321 65 AESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAANP----R 140 (284)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC----C
T ss_conf 774888899875999999999987449857984175300068998854577778988016575899999997253----4
Q ss_pred CCCCCCCCCCCCCC-CH----HHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCC-----CCCCEECCCCCHHHHH
Q ss_conf 64203477778985-03----44431134543222110001024777799999995135-----5786162684333389
Q gi|254780595|r 150 LAVLRLSGIYGPKR-NP----FIKIRQKNSLRLVKKNQVFNRIRVEDVARCVIFLMTHH-----LGGIFNLSDDEPAPPQ 219 (289)
Q Consensus 150 ~~ilR~~~iyGp~r-~~----~~~~~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l~~~~-----~~~iyni~~~~~~s~~ 219 (289)
T Consensus 141 ~~IlR~~~vyG~~~~~~~~~~~~~~~~~~~i~i~-~d~~~~~~~v~D~a~~~~~~~e~~~~~~~~~giyNi~~~~~~s~~ 219 (284)
T pfam04321 141 HLILRTAWVYGEYGNNFVKTMLRLAAERDELRVV-DDQLGSPTSARDLADALLALIRKRLRGPALAGTYHLAGSGETSWY 219 (284)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEE-CCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEHH
T ss_conf 6078773442888878899999998628982685-375689698999999999999820337777761374189844099
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEECHHHHHH-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999995579986343101256824465530694516899997-398448999999999999975
Q gi|254780595|r 220 NVIMEAASLMKITPPLEQCFDTANISPFTRFFYADNKRISNAKIKS-LGFQLLYPNYRISLKQLWKEI 286 (289)
Q Consensus 220 e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~kl~~-lG~~p~~p~~~~gl~~~~~~~ 286 (289)
T Consensus 220 ela~~i~~~~g~~~~~i~~v~~~~~~~~~-~r-P~~~~lD~sK~~~~lg~~p~--~~~egl~~~l~~~ 283 (284)
T pfam04321 220 DFARAIFDEAGADGGRVRPIPTAEYPTPA-RR-PANSVLDTSKLEATFGIPLP--DWREALAEVLDEL 283 (284)
T ss_pred HHHHHHHHHHCCCCCCEEEEEHHHCCCCC-CC-CCCCCCCHHHHHHHHCCCCC--CHHHHHHHHHHHH
T ss_conf 99999999968887742661188888789-99-76001559999997687999--8999999999996