RPSBLAST alignment for GI: 254780596 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 76.9 bits (189), Expect = 1e-14
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 39 NVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALF 98
++S E++G+LG +G GK+T ++++AG++ P G + + + P+ I ++
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEG---- 76
Query: 99 PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARA 158
V L + D + ++ E+SGG LQRV A
Sbjct: 77 -------TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAAC 129
Query: 159 FVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
+ L+DEP + LDV + + +I + E ++ +V H+I + DR+
Sbjct: 130 LSKDADIYLLDEPSAYLDV-EQRLMASKVIRRFAENNE--KTAFVVEHDIIMIDYLADRL 186
Query: 219 LVFSSNPG 226
+VF P
Sbjct: 187 IVFEGEPS 194