RPSBLAST alignment for GI: 254780596 and conserved domain: cd03248
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
Score = 84.2 bits (208), Expect = 6e-17
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 23/210 (10%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP----- 85
LVL V+F + GE+ L+G SGSGKST++ ++ P GQVL GK I
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE- 144
+S+V Q LF ++ +N+ GL++ + + + A I S + TE
Sbjct: 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI--SELASGYDTEV 144
Query: 145 ------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+SGG QRV ARA + P +L++DE SALD + + ++ L D W E R
Sbjct: 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERR--- 200
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
++L++ H + V D++LV GRI
Sbjct: 201 -TVLVIAHRL-STVERADQILVLDG--GRI 226