RPSBLAST alignment for GI: 254780596 and conserved domain: cd03248

>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
 Score = 84.2 bits (208), Expect = 6e-17
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 23/210 (10%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP----- 85
           LVL  V+F +  GE+  L+G SGSGKST++ ++     P  GQVL  GK I         
Sbjct: 28  LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87

Query: 86  KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE- 144
             +S+V Q   LF   ++ +N+  GL++   +  +   +   A   I      S + TE 
Sbjct: 88  SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI--SELASGYDTEV 144

Query: 145 ------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
                 +SGG  QRV  ARA +  P +L++DE  SALD  + + ++  L D W E R   
Sbjct: 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERR--- 200

Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
            ++L++ H +   V   D++LV     GRI
Sbjct: 201 -TVLVIAHRL-STVERADQILVLDG--GRI 226