RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
         (438 letters)



>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
           ATP-binding protein.  This ABC transporter ATP-binding
           protein is found in a number of genomes in operon-like
           contexts strongly suggesting a substrate specificity for
           2-aminoethylphosphonate (2-AEP). The characterized
           PhnSTUV system is absent in the genomes in which this
           system is found. These genomes encode systems for the
           catabolism of 2-AEP, making the need for a
           2-AEP-specific transporter likely.
          Length = 353

 Score =  205 bits (523), Expect = 2e-53
 Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 22/244 (9%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           L I +I + F      G    L  ++ +V  GE V LLG SG GK+TLLRIIAGL   ++
Sbjct: 5   LSIDNIRKRF------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA 58

Query: 72  GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
           G +   G+ I   PP+  D  +VFQ++ALFP LTV +N+  GLK +G+ + E  +R    
Sbjct: 59  GTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAEL 118

Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
           +DL+GL G E  +  ++SGG  QRV  ARA    P LLL+DEP SALD    E+LRT++ 
Sbjct: 119 LDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR 178

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRL 243
            L  + RL + ++ MVTH+ EEA+ M DR++V   N G I +   +  P     HP    
Sbjct: 179 QL--QRRLGVTTI-MVTHDQEEALSMADRIVVM--NHGVIEQ---VGTPQEIYRHPATPF 230

Query: 244 SPEF 247
             +F
Sbjct: 231 VADF 234


>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score =  203 bits (519), Expect = 6e-53
 Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 14/218 (6%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
            L+ +N  + SGE++ +LG SG GK+TLL +IAG V    G +   GK ++ P  +  VV
Sbjct: 16  ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75

Query: 92  FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151
           FQ   L PW  V +NV  GL+  G++K +R + A   +  +GL+G E  +  ++SGG  Q
Sbjct: 76  FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ 135

Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
           RVG ARA    P LLL+DEPF ALD  T E ++T L+ LW E    +   L++TH+IEEA
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV---LLITHDIEEA 192

Query: 212 VLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQ 249
           V M   +++ S  PGR+ E           RL   F +
Sbjct: 193 VFMATELVLLSPGPGRVVE-----------RLPLNFAR 219


>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
           This model describes the ATP binding subunits of nitrate
           transport in bacteria and archaea. This protein belongs
           to the ATP-binding cassette (ABC) superfamily. It is
           thought that the two subunits encoded by ntrC and ntrD
           form the binding surface for interaction with ATP. This
           model is restricted in identifying ATP binding subunit
           associated with the nitrate transport. Nitrate
           assimilation is aided by other proteins derived from the
           operon which among others include products of ntrA - a
           regulatory protein; ntrB - a hydropbobic transmembrane
           permease and narB - a reductase.
          Length = 230

 Score =  196 bits (499), Expect = 1e-50
 Identities = 94/214 (43%), Positives = 135/214 (63%), Gaps = 6/214 (2%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
           L  VN  +  GE + L+G SG GKSTLL +I+GL  P+SG V+ +GK+I +P  D  VVF
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 93  QTFALFPWLTVLENVELGLKA--KGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150
           Q ++L PWLTV EN+ L +      + K ERR      I L+GL         ++SGGM 
Sbjct: 61  QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120

Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEE 210
           QRV  ARA  + P +LL+DEPF ALD LT  NL+ +L+ +W E R+   ++LMVTH+++E
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV---TVLMVTHDVDE 177

Query: 211 AVLMCDRVLVFSSNPG-RIAEEVLISIPHPRNRL 243
           A+L+ DRV++ ++ P   I + + +  P PR+RL
Sbjct: 178 ALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRL 211


>gnl|CDD|150485 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
           transporter, ATPase subunit.  Members of this family are
           found in various prokaryotic ABC transporters,
           predominantly involved in nitrate, sulfonate and
           bicarbonate translocation.
          Length = 120

 Score =  176 bits (449), Expect = 8e-45
 Identities = 72/120 (60%), Positives = 83/120 (69%)

Query: 308 PDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKKLFAKQLL 367
           P LA+ LQL+ D LF I E+ +LL    L GGDI LT  G RFA  D D RK+LFA+QLL
Sbjct: 1   PQLADELQLDIDDLFPIVEAAELLGFAELEGGDIELTPLGRRFAEADIDERKELFAEQLL 60

Query: 368 QHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYAELFSYDE 427
            HVPL   IRRVLDER  H AP  RF +ELEDY+S E A+ T+ T + WGRYAELF YDE
Sbjct: 61  AHVPLAAHIRRVLDERPSHRAPEERFLDELEDYLSPEEAERTLRTAIDWGRYAELFEYDE 120


>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
           Provisional.
          Length = 351

 Score =  174 bits (442), Expect = 5e-44
 Identities = 87/223 (39%), Positives = 133/223 (59%), Gaps = 14/223 (6%)

Query: 9   NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
              + +++I + F      G+  V+D +N  +  G +V LLG SG GK+T+LR++AGL  
Sbjct: 4   KNFVVLKNITKRF------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57

Query: 69  PSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
           P+ GQ+   G+ +       +DI +VFQ++ALFP +++ ENV  GLK  G+ KEER++R 
Sbjct: 58  PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV 117

Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
             A++L+ L GFE  +  +ISGG  QRV  ARA ++ P +LL DEP S LD     ++R 
Sbjct: 118 KEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177

Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
            + +L  + +  I S L VTH+  EA  + D V+V   N G+I
Sbjct: 178 KIREL--QQQFNITS-LYVTHDQSEAFAVSDTVIVM--NKGKI 215


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score =  173 bits (441), Expect = 7e-44
 Identities = 87/268 (32%), Positives = 147/268 (54%), Gaps = 24/268 (8%)

Query: 25  KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP 84
           K +G    ++  +  ++ GEI  ++G SGSGKST +R++  L+ P++GQ+   G+ I   
Sbjct: 1   KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60

Query: 85  PKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
                       I +VFQ FALFP +T+L+N  LG +  G  ++ER+++AL  + L+GL+
Sbjct: 61  SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120

Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
            +E  +  E+SGGM QRVG ARA    P +LLMDE FSALD L  ++++ +L  L     
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL---QA 177

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRLSPEFRQI 250
              ++++ +TH+++EA+ + DR+++  +      E V +  P     +P N    EF   
Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKA-----GEIVQVGTPDEILRNPANEYVEEFIGK 232

Query: 251 VEKIYALMTKKEEKRLN--PLENAPGSG 276
           V+       ++  +R+N  P+      G
Sbjct: 233 VDLSQVFDAERIAQRMNTGPITKTADKG 260


>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
           protein.  Members of this protein family are the
           ATP-binding subunit of a three-protein transporter. This
           family belongs, more broadly, to the family of proline
           and glycine-betaine transporters, but members have been
           identified by direct characterization and by
           bioinformatic means as choline transporters. Many
           species have several closely-related members of this
           family, probably with variable abilities to act
           additionally on related quaternary amines.
          Length = 382

 Score =  170 bits (433), Expect = 6e-43
 Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 18/215 (8%)

Query: 27  SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-GKKIKDP- 84
           +G ++ +   + ++  GEI  L+G SGSGKS+LLR + GL   S G VL K G    D  
Sbjct: 34  TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVA 93

Query: 85  -----------PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133
                         +S+VFQ FAL PWLTV ENV  GL+ +G+ + ERRKR    ++L+G
Sbjct: 94  NCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVG 153

Query: 134 LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
           L  +      E+SGGM QRVG ARAF +   +LLMDEPFSALD L    L+ +L++L  +
Sbjct: 154 LAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLEL--Q 211

Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
            +L  ++++ V+H+++EA+ + +R+ +     GRI
Sbjct: 212 AKLN-KTIIFVSHDLDEALKIGNRIAIMEG--GRI 243


>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
           
          Length = 237

 Score =  168 bits (427), Expect = 2e-42
 Identities = 96/244 (39%), Positives = 136/244 (55%), Gaps = 22/244 (9%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           +EI +I + F      G+   LD VN  V +G +V LLG SGSGKSTLLRIIAGL  P S
Sbjct: 1   IEIANISKRF------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS 54

Query: 72  GQVLFKGKKI-KDPPKD--ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
           G++   G+   +   +D  I  VFQ +ALF  LTV +N+  GL+ +   K + + R    
Sbjct: 55  GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL 114

Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
           ++L+ L+G    +  ++SGG  QRV  ARA  V P +LL+DEPF ALD    + LR+ L 
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRL 243
            L  E  +   + + VTH+ EEA+ + DR++V S+  G+I      +EV     HP N  
Sbjct: 175 KLHDEVHV---TTVFVTHDQEEAMEVADRIVVMSN--GKIEQIGSPDEVY---DHPANPF 226

Query: 244 SPEF 247
              F
Sbjct: 227 VMSF 230


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included).
          Length = 325

 Score =  160 bits (406), Expect = 7e-40
 Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 16/208 (7%)

Query: 48  LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVL 104
           LLG SG GK+TLLR++AG   P SG ++  G+ + + P   + I++VFQ++ALFP +TV 
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60

Query: 105 ENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPS 164
           ENV  GLK + + + E + R L A+ L+ L+ F      ++SGG  QRV  ARA V  P 
Sbjct: 61  ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120

Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
           +LL+DEP SALD    + ++ +L    I+ +L I + + VTH+ EEA+ M DR+ +    
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKT--IQEQLGI-TFVFVTHDQEEAMTMSDRIAIMRK- 176

Query: 225 PGRIAEEVLISIP-----HPRNRLSPEF 247
            G+IA+   I  P      P N     F
Sbjct: 177 -GKIAQ---IGTPEEIYEEPANLFVARF 200


>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
           protein; Reviewed.
          Length = 375

 Score =  160 bits (406), Expect = 8e-40
 Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 15/233 (6%)

Query: 1   MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
               +     L+E++ I +SF  K++      +  ++  +++GE + LLG SG GK+T+L
Sbjct: 5   NKQPSSLSP-LVELRGISKSFDGKEV------ISNLDLTINNGEFLTLLGPSGCGKTTVL 57

Query: 61  RIIAGLVSPSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGID 117
           R+IAG  +P SG+++  G+ I   P   + ++ VFQ++ALFP +TV ENV  GL+ +   
Sbjct: 58  RLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP 117

Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
             E   R + A+ ++ L+ F      ++SGG  QRV  ARA V  P +LL+DE  SALD 
Sbjct: 118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177

Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
              + ++ +L  L  + +L I + + VTH+ EEA+ M DR++V     GRI +
Sbjct: 178 KLRKQMQNELKAL--QRKLGI-TFVFVTHDQEEALTMSDRIVVM--RDGRIEQ 225


>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
           Provisional.
          Length = 257

 Score =  154 bits (392), Expect = 3e-38
 Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 13/225 (5%)

Query: 22  SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
           ++ K  G   VL++++ ++ +G+ V ++GRSG GKSTLLR++AGL +PS+G++L     +
Sbjct: 17  AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL 76

Query: 82  KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141
            +  +D  ++FQ   L PW  V++NV LGLK +       R  AL A+  +GL    +  
Sbjct: 77  AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW------RDAALQALAAVGLADRANEW 130

Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID-LWIEGRLPIES 200
              +SGG  QRV  ARA +  P LLL+DEP  ALD LT   ++ DLI+ LW +      +
Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGF---T 186

Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSP 245
           +L+VTH++ EAV M DRVL+     G+I  ++ + +P PR R S 
Sbjct: 187 VLLVTHDVSEAVAMADRVLLIEE--GKIGLDLTVDLPRPRRRGSA 229


>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
           Reviewed.
          Length = 240

 Score =  150 bits (380), Expect = 8e-37
 Identities = 105/255 (41%), Positives = 139/255 (54%), Gaps = 28/255 (10%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           ++E +++ + F      G   VL  ++ N+  GE+V ++G SGSGKSTLLR I  L   +
Sbjct: 1   MIEFKNVSKHF------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54

Query: 71  SGQVLFKGKKIKDPPKDI-------SVVFQTFALFPWLTVLENVELG-LKAKGIDKEERR 122
           SG ++  G K+ DP  D         +VFQ F LFP LT LENV  G L+ +G  KEE  
Sbjct: 55  SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE 114

Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE 181
           K+A   +  +GL      + +E+SGG  QRV  ARA  V P L+L DEP SALD  L  E
Sbjct: 115 KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIP 237
            L+  + DL  EG     +M++VTH I  A  +  R L+F    GRIAE    +VLI  P
Sbjct: 175 VLKV-MQDLAEEGM----TMVIVTHEIGFAEKVASR-LIFIDK-GRIAEDGDPQVLIKNP 227

Query: 238 HPRNRLSPEFRQIVE 252
            P  RL  EF Q V 
Sbjct: 228 -PSQRLQ-EFLQHVS 240


>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
           ATP-binding component PhnT.  This ATP-binding component
           of an ABC transport system is found in Salmonella and
           Burkholderia lineages in the vicinity of enzymes for the
           breakdown of 2-aminoethylphosphonate.
          Length = 362

 Score =  149 bits (378), Expect = 1e-36
 Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 11/233 (4%)

Query: 22  SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFKGK 79
            L+   G   VLD ++  + +GE++ L+G+SG GK+TLLR IAG V  +  +G++    +
Sbjct: 10  HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69

Query: 80  KIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136
            +   P   + ++++FQ +ALFP L V +NV  GL+A+ + K +  +R   A+ L+GL  
Sbjct: 70  DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD 129

Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
             +    ++SGGM QR+  ARA  + P +LL+DEP SALD     N+R ++  L     L
Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL--HEEL 187

Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE--EVLISIPHPRNRLSPEF 247
           P  ++L VTH+ ++A+ + D+  +     GR+A   E       P +  + EF
Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKD--GRLAAHGEPQALYDAPADGFAAEF 238


>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
           Provisional.
          Length = 353

 Score =  149 bits (379), Expect = 1e-36
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 20/220 (9%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           +EI +I +SF      G   VL+ ++ ++ SG++V LLG SGSGK+TLLRIIAGL   +S
Sbjct: 3   IEIANIKKSF------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS 56

Query: 72  GQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKA----KGIDKEERR 122
           G + F G  +     +D  + +  VFQ +ALF  +TV +N+  GL      +  +    +
Sbjct: 57  GHIRFHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK 114

Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
            +    ++++ L      +  ++SGG  QRV  ARA  V P +LL+DEPF ALD    + 
Sbjct: 115 AKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174

Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
           LR  L  L  E  L   S+  VTH+ EEA+ + DRV+V S
Sbjct: 175 LRRWLRQLHEE--LKFTSVF-VTHDQEEAMEVADRVVVMS 211


>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
           Provisional.
          Length = 377

 Score =  149 bits (377), Expect = 2e-36
 Identities = 91/245 (37%), Positives = 136/245 (55%), Gaps = 22/245 (8%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LLEI+++ +SF      G   V D V+  +  GEI  LLG SG GKSTLLR++AG   P+
Sbjct: 19  LLEIRNLTKSFD-----GQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT 72

Query: 71  SGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
           +GQ++  G  +   P   + I+++FQ++ALFP +TV +N+  GLK   + K E   R   
Sbjct: 73  AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNE 132

Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
            + L+ +  F      ++SGG  QRV  AR+    P LLL+DEP  ALD    + ++ ++
Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192

Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNR 242
           +D  I  R+ + + +MVTH+ EEA+ M  R+ +   N G+    V I  P     HP  R
Sbjct: 193 VD--ILERVGV-TCVMVTHDQEEAMTMAGRIAIM--NRGKF---VQIGEPEEIYEHPTTR 244

Query: 243 LSPEF 247
            S EF
Sbjct: 245 YSAEF 249


>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
           subunit; Provisional.
          Length = 400

 Score =  144 bits (363), Expect = 7e-35
 Identities = 80/206 (38%), Positives = 130/206 (63%), Gaps = 12/206 (5%)

Query: 27  SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---KKIKD 83
           +G  L +   +  +  GEI  ++G SGSGKST++R++  L+ P+ GQVL  G    KI D
Sbjct: 38  TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISD 97

Query: 84  PP------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
                   K I++VFQ+FAL P +TVL+N   G++  GI+ EERR++AL A+  +GL+ +
Sbjct: 98  AELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY 157

Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
             ++  E+SGGM QRVG ARA  + P +LLMDE FSALD L    ++ +L+ L  + +  
Sbjct: 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-- 215

Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223
             +++ ++H+++EA+ + DR+ +  +
Sbjct: 216 -RTIVFISHDLDEAMRIGDRIAIMQN 240


>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
           protein.  Phosphonates are a class of
           phosphorus-containing organic compound with a stable
           direct C-P bond rather than a C-O-P linkage. A number of
           bacterial species have operons, typically about 14 genes
           in size, with genes for ATP-dependent transport of
           phosphonates, degradation, and regulation of the
           expression of the system. Members of this protein family
           are the ATP-binding cassette component of tripartite ABC
           transporters of phosphonates.
          Length = 243

 Score =  142 bits (361), Expect = 1e-34
 Identities = 83/236 (35%), Positives = 121/236 (51%), Gaps = 26/236 (11%)

Query: 24  KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------- 76
           K        L  +N N++ GE V ++G SG+GKSTLLR I  LV PSSG +L        
Sbjct: 9   KVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68

Query: 77  -KGKKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAK-------GIDKEERRKRALS 127
            +GKK++   + I ++FQ + L   LTVLENV  G L  K       G   EE ++RALS
Sbjct: 69  LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALS 128

Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
           A++ +GL         ++SGG  QRV  ARA    P L+L DEP ++LD  T++ +   L
Sbjct: 129 ALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188

Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236
             +  E  + +   ++  H ++ A    DR++       VF   P  + +EVL  I
Sbjct: 189 KRINKEDGITV---IINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI 241


>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
           transporter, lactococcin 972 group.  A gene pair with a
           fairly wide distribution consists of a polypeptide
           related to the lactococcin 972 (see TIGR01653) and
           multiple-membrane-spanning putative immunity protein
           (see TIGR01654). This model represents a small clade
           within the ABC transporters that regularly are found
           adjacent to these bacteriocin system gene pairs and are
           likely serve as export proteins.
          Length = 206

 Score =  139 bits (353), Expect = 1e-33
 Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 14/206 (6%)

Query: 23  LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
           + K  G+ ++LD +N  +  G++  ++G SGSGKSTLL II  L    SGQV   GK+  
Sbjct: 4   ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63

Query: 83  DPPK---------DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133
                         +  +FQ FAL    TV EN++LGLK K + K+E+R++   A++ +G
Sbjct: 64  PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123

Query: 134 LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
           L+        E+SGG  QRV  ARA +  P L+L DEP  +LD    + +   L++L  E
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183

Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVL 219
           G+     +++VTH+ E A    DRV+
Sbjct: 184 GKT----IIIVTHDPEVAK-QADRVI 204


>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
           protein; Provisional.
          Length = 369

 Score =  138 bits (349), Expect = 3e-33
 Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 22/233 (9%)

Query: 1   MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
           MA++ +++        + +++    IS +      +N ++  GE V  +G SG GKSTLL
Sbjct: 1   MASVTLRN--------VTKAYGDVVISKD------INLDIHEGEFVVFVGPSGCGKSTLL 46

Query: 61  RIIAGLVSPSSGQVLFKGKKIKD-PPKDISV--VFQTFALFPWLTVLENVELGLKAKGID 117
           R+IAGL   +SG +    K++ D PP +  V  VFQ++AL+P L+V EN+  GLK  G  
Sbjct: 47  RMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106

Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
           KEE  +R     +++ L          +SGG  QRV   R  V  PS+ L+DEP S LD 
Sbjct: 107 KEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166

Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
                +R ++  L    RL   +M+ VTH+  EA+ + D+++V   + GR+A+
Sbjct: 167 ALRVQMRIEISRL--HKRLG-RTMIYVTHDQVEAMTLADKIVVL--DAGRVAQ 214


>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
           subunit; Provisional.
          Length = 356

 Score =  137 bits (348), Expect = 5e-33
 Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 37/239 (15%)

Query: 1   MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
           MA + ++  R             K   G   V+  ++ +V+ GE + L+G SG GKSTLL
Sbjct: 1   MAGLKLQAVR-------------KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL 47

Query: 61  RIIAGLVSPSSGQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGID 117
           R++AGL   +SG++   G+ + +  P   DI++VFQ +AL+P ++V EN+  GLK +G+ 
Sbjct: 48  RMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP 107

Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
           K E  +R   A  ++ L+        E+SGG  QRV   RA V  P++ L DEP S LD 
Sbjct: 108 KAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167

Query: 178 LTAENLRTDLIDLWIEGRLPIESM--------LMVTHNIEEAVLMCDRVLVFSSNPGRI 228
                LR       ++ RL I+ +        L VTH+  EA+ + DRV+V   N G  
Sbjct: 168 ----KLR-------VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM--NGGVA 213


>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
           Provisional.
          Length = 343

 Score =  136 bits (344), Expect = 1e-32
 Identities = 84/248 (33%), Positives = 133/248 (53%), Gaps = 23/248 (9%)

Query: 13  EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72
           E+++I + F        +  L+ V+ ++ +GEI G++G SG+GKSTL+R I  L  P+SG
Sbjct: 3   ELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60

Query: 73  QVLFKGK---KIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
           +VL  G+    + +       + I ++FQ F L    TV +NV L L+  G  K E + R
Sbjct: 61  RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR 120

Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
               ++L+GL      +  ++SGG  QRV  ARA    P +LL DE  SALD  T     
Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT----- 175

Query: 185 TDLI-DLW--IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLIS--IPHP 239
           T  I +L   I   L + +++++TH ++    +CDRV V  +  GR+ E+  +S    HP
Sbjct: 176 TRSILELLKDINRELGL-TIVLITHEMDVVKRICDRVAVIDA--GRLVEQGTVSEVFSHP 232

Query: 240 RNRLSPEF 247
           ++ L+ EF
Sbjct: 233 KHPLTREF 240


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score =  134 bits (338), Expect = 6e-32
 Identities = 84/223 (37%), Positives = 115/223 (51%), Gaps = 24/223 (10%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF--------KGK 79
           G L VLD +NF+V++GE V L+G SGSGKST+LRI+  L     GQ+           G+
Sbjct: 11  GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGR 70

Query: 80  KIKDPPKD----------ISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSA 128
                P D          I +VFQ+F LFP  TVL+NV    +   G+ + E  KRA+  
Sbjct: 71  NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130

Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
           +D++GL         ++SGG  QRV  ARA  + P ++L DE  SALD      +   + 
Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
            L  E  L   +ML+VTH +  A    DRV  F  + GRI E+
Sbjct: 191 RLASEHDL---TMLLVTHEMGFAREFADRVCFF--DKGRIVEQ 228


>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding cassette
           (ABC) protein of the three subunit molybdate ABC
           transporter. The three proteins of this complex are
           homologous to proteins of the sulfate ABC transporter.
           Molybdenum may be used in nitrogenases of
           nitrogen-fixing bacteria and in molybdopterin cofactors.
           In some cases, molybdate may be transported by a sulfate
           transporter rather than by a specific molybdate
           transporter.
          Length = 354

 Score =  128 bits (323), Expect = 3e-30
 Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 14/195 (7%)

Query: 35  KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG-------KKIKDPP-- 85
             +F +    +  + GRSGSGK+TL+R+IAGL  P  G+++  G       K I  PP  
Sbjct: 15  DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74

Query: 86  KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
           + I  VFQ   LFP L+V  N+  G+K       ERR      I+L+G+          +
Sbjct: 75  RRIGYVFQEARLFPHLSVRGNLRYGMKR--ARPSERRISFERVIELLGIGHLLGRLPGRL 132

Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
           SGG  QRV   RA +  P LLLMDEP +ALD      +   L  L  E  +P   +L V+
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP---ILYVS 189

Query: 206 HNIEEAVLMCDRVLV 220
           H+++E + + DRV+V
Sbjct: 190 HSLQEVLRLADRVVV 204


>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
           ATP-binding subunit.  This model describes daunorubicin
           resistance ABC transporter, ATP binding subunit in
           bacteria and archaea. This model is restricted in its
           scope to preferentially recognize the ATP binding
           subunit associated with effux of the drug, daunorubicin.
           This transport system belong to the larger ATP-Binding
           Cassette (ABC) transporter superfamily. The
           characteristic feature of these transporter is the
           obligatory coupling of ATP hydrolysis to substrate
           translocation. The minimal configuration of bacterial
           ABC transport system: an ATPase or ATP binding subunit;
           An integral membrane protein; a hydrophilic polypetpide,
           which likely functions as substrate binding protein. In
           eukaryotes proteins of similar function include p-gyco
           proteins, multidrug resistance protein etc.
          Length = 302

 Score =  126 bits (319), Expect = 1e-29
 Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 10/211 (4%)

Query: 25  KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KD 83
           K+ G+   +D VNF V  GE+ G LG +G+GK+T +R++  L+ P+SG     G  + ++
Sbjct: 1   KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60

Query: 84  PPK---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140
           P K    I +V Q  ++   LT  EN+E+  +  G+ K+E  +RA   ++L  L      
Sbjct: 61  PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120

Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
                SGGM +R+  A + +  P +L +DEP + LD  T   +  D I    E  + I  
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEGVTI-- 177

Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
            L+ TH +EEA  +CDR+ +   + GRI  E
Sbjct: 178 -LLTTHYMEEADKLCDRIAII--DHGRIIAE 205


>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score =  125 bits (316), Expect = 2e-29
 Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 21/251 (8%)

Query: 11  LLEIQDICQSF--SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
           ++++ +I + F    K I      L+ V+ +V +G+I G++G SG+GKSTL+R +  L  
Sbjct: 1   MIKLSNITKVFHQGTKTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 56

Query: 69  PSSGQVLFKGK---KIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120
           P+SG V+  G+    + +       + I ++FQ F L    TV  NV L L+     K+E
Sbjct: 57  PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE 116

Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
            +++    + L+GL     ++ + +SGG  QRV  ARA    P +LL DE  SALD  T 
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176

Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLIS--IPH 238
           +++   L +  I  RL + ++L++TH ++    +CD V V S+  G + E+  +S    H
Sbjct: 177 QSILELLKE--INRRLGL-TILLITHEMDVVKRICDCVAVISN--GELIEQGTVSEIFSH 231

Query: 239 PRNRLSPEFRQ 249
           P+  L+ +F +
Sbjct: 232 PKTPLAQKFIR 242


>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
           Family protein. 
          Length = 216

 Score =  125 bits (316), Expect = 2e-29
 Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 12/204 (5%)

Query: 27  SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI----- 81
            G+   LD +NF+++ GE+V L+G SG+GKST L++I G+  P+ G++ F G+ +     
Sbjct: 13  GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG 72

Query: 82  KDPPK---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
           ++ P     I +VFQ   L    TV +NV   L+  G+   +  +R  +A++ +GL+G  
Sbjct: 73  REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
            A   ++SGG  QRV  ARA V  P LLL DEP   LD   +     D++ L+ E     
Sbjct: 133 HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR----DIMRLFEEFNRRG 188

Query: 199 ESMLMVTHNIEEAVLMCDRVLVFS 222
            ++L+ TH+I        R L  S
Sbjct: 189 TTVLVATHDINLVETYRHRTLTLS 212


>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
           protein.  This model represents LolD, a member of the
           ABC transporter family (pfam00005). LolD is involved in
           localization of lipoproteins in some bacteria. It works
           with a transmembrane protein LolC, which in some species
           is a paralogous pair LolC and LolE. Depending on whether
           the residue immediately following the new, modified
           N-terminal Cys residue, the nascent lipoprotein may be
           carried further by LolA and LolB to the outer membrane,
           or remain at the inner membrane. The top scoring
           proteins excluded by this model include homologs from
           the archaeal genus Methanosarcina.
          Length = 221

 Score =  123 bits (311), Expect = 8e-29
 Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 15/219 (6%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL+ +++ + +   K+     VL  V+ ++  GEIV ++G SGSGKSTLL ++ GL +P+
Sbjct: 1   LLKCENLGKRYQEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58

Query: 71  SGQVLFKGKKI---------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
           SG+VLF G+ +         K   K +  ++Q   L P  T LENV + L       +E 
Sbjct: 59  SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA 118

Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
           ++RA   ++ +GL+   +   +E+SGG  QRV  ARA V  PSL+L DEP   LD   A+
Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
            +   +++L  E      S L+VTH++E A  + DRVL 
Sbjct: 179 IIFDLMLELNRELNT---SFLVVTHDLELAKKL-DRVLE 213


>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
           This model describes the energy-transducing ATPase
           subunit ThiQ of the ThiBPQ thiamine (and thiamine
           pyrophosphate) ABC transporter in several
           Proteobacteria. This protein is found so far only in
           Proteobacteria, and is found in complete genomes only if
           the ThiB and ThiP subunits are also found.
          Length = 213

 Score =  123 bits (309), Expect = 1e-28
 Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 8/196 (4%)

Query: 37  NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-IKDPP--KDISVVFQ 93
           + NV+ GEIV ++G SG+GKSTLL +IAG + P+SG +    +      P  + +S++FQ
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77

Query: 94  TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRV 153
              LF  LTV +N+ LGL        E++++ + A   +G+  +      ++SGG  QRV
Sbjct: 78  ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137

Query: 154 GFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVL 213
             AR  V    +LL+DEPFSALD L  E +   +  L  E +    ++LMVTH++ +A  
Sbjct: 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR---TLLMVTHHLSDARA 194

Query: 214 MCDRVLVFSSNPGRIA 229
           +  ++ V S   G+I 
Sbjct: 195 IASQIAVVSQ--GKIK 208


>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
           protein YecC; Provisional.
          Length = 250

 Score =  119 bits (300), Expect = 1e-27
 Identities = 90/239 (37%), Positives = 123/239 (51%), Gaps = 28/239 (11%)

Query: 24  KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL-------- 75
           KK  G   VL  ++  V  GE+V ++G SGSGK+TLLR I  L  P +G +         
Sbjct: 11  KKFHGQT-VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69

Query: 76  ---FKGKK--IKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAI 129
                 +K  I+   + +  VFQ F LFP  TVLEN+  G +  KG  KEE   RA   +
Sbjct: 70  ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL 129

Query: 130 DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDLI 188
             +GL G E+++   +SGG  QRV  ARA  + P ++L DEP SALD  L  E L T + 
Sbjct: 130 AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IR 188

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE----VLISIP-HPRNR 242
            L  E R    +M++VTH +  A  + DR +    + GRI E+     L + P  PR R
Sbjct: 189 QLAQEKR----TMVIVTHEMSFARDVADRAIFM--DQGRIVEQGPAKALFADPQQPRTR 241


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score =  119 bits (299), Expect = 2e-27
 Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 24/252 (9%)

Query: 11  LLEIQDIC---QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
           LLE++D+    ++  L        VL  V+ ++  GE VGLLGRSG GKSTL R++ GL 
Sbjct: 2   LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61

Query: 68  SPSSGQVLFKG--------KKIKDPPKDISVVFQTF--ALFPWLTVLENVELGLK-AKGI 116
            P+ G V F+G        K+ +   +D+ +VFQ    A+ P +TV + +   L+    +
Sbjct: 62  KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL 121

Query: 117 DKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
           D+ E++ R    +D++GL          ++SGG LQR+  ARA  V P L+++DE  S L
Sbjct: 122 DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181

Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV--- 232
           D++    +   L  L         + L +TH++      C RV V     G+I EE    
Sbjct: 182 DMVLQAVILELLRKLQQAFGT---AYLFITHDLRLVQSFCQRVAVMDK--GQIVEECDVA 236

Query: 233 -LISIPHPRNRL 243
            L+S  HP  R 
Sbjct: 237 QLLSFKHPAGRN 248


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
           model describes FtsE, a member of the ABC transporter
           ATP-binding protein family. This protein, and its
           permease partner FtsX, localize to the division site. In
           a number of species, the ftsEX gene pair is located next
           to FtsY, the signal recognition particle-docking
           protein.
          Length = 214

 Score =  118 bits (299), Expect = 2e-27
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 16/202 (7%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-- 85
           G +  L  V+ ++  GE + L G SG+GK+TLL+++ G ++PS GQV   G+ +      
Sbjct: 13  GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72

Query: 86  ------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
                 + I VVFQ F L P  TV ENV L L+ +G  + E ++R  +A+  +GL+    
Sbjct: 73  QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HK 130

Query: 140 AHTT--EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
           A     ++SGG  QRV  ARA V  P LLL DEP   LD   +E +   L  L   G   
Sbjct: 131 ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG--- 187

Query: 198 IESMLMVTHNIEEAVLMCDRVL 219
             ++++ TH++     +  RV+
Sbjct: 188 -TTVIVATHDLSLVDRVAHRVI 208


>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 258

 Score =  118 bits (299), Expect = 3e-27
 Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 29/240 (12%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           +LE +++          G   +LD V+  +  GE+V +LG +G+GKSTLLR ++G +SP 
Sbjct: 2   MLEARNLSVRL------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD 55

Query: 71  SGQVLFKGKKIKD-PPKDIS----VVFQTFAL-FPWLTVLENVELGLKAKGIDKEERRKR 124
           SG+V   G+ + D  P +++    V+ Q  +L FP+ TV E V +G    G+ + E    
Sbjct: 56  SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL 114

Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFV------VFPSLLLMDEPFSALDVL 178
             +A+  + L         ++SGG  QRV  AR           P  LL+DEP SALD+ 
Sbjct: 115 VAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174

Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVL 233
              ++      L  E  L   ++++V H++  A    DR+++     GR+       EVL
Sbjct: 175 HQHHVLRLARQLAHERGL---AVIVVLHDLNLAARYADRIVLLHQ--GRLVADGTPAEVL 229


>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
           Provisional.
          Length = 232

 Score =  118 bits (298), Expect = 3e-27
 Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 12/198 (6%)

Query: 37  NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-IKDPP--KDISVVFQ 93
           +  V  GE V +LG SG+GKSTLL +IAG ++P+SG +   G+     PP  + +S++FQ
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78

Query: 94  TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGLDGFESAHTTEISGGMLQR 152
              LF  LTV +N+ LGL   G+     ++  L AI   +G++   +    ++SGG  QR
Sbjct: 79  ENNLFSHLTVAQNIGLGL-NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR 137

Query: 153 VGFARAFVVFPSLLLMDEPFSALD-VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
           V  AR  V    +LL+DEPFSALD  L  E L T +  +  E +L   ++LMV+H++E+A
Sbjct: 138 VALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQVCQERQL---TLLMVSHSLEDA 193

Query: 212 VLMCDRVLVFSSNPGRIA 229
             +  R LV +   GRIA
Sbjct: 194 ARIAPRSLVVAD--GRIA 209


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score =  117 bits (295), Expect = 7e-27
 Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 33/214 (15%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP---K 86
            LD V+  +  GE V ++GR GSGKSTLL+++ GL  P+ G VL  G  I+  DP    +
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539

Query: 87  DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT--- 143
           +I  V Q   LF + T+ +N+ LG  A   D EE     L A +L G+  F   H     
Sbjct: 540 NIGYVPQDPRLF-YGTLRDNIALG--APYADDEE----ILRAAELAGVTEFVRRHPDGLD 592

Query: 144 --------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
                    +SGG  Q V  ARA +  P +LL+DEP SA+D  + E  +  L   W+ G+
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR-WLAGK 651

Query: 196 LPIESMLMVTHNIEEAVL-MCDRVLVFSSNPGRI 228
               ++++VTH    ++L + DR++V  +  GRI
Sbjct: 652 ----TLVLVTHRT--SLLDLVDRIIVMDN--GRI 677


>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score =  115 bits (290), Expect = 2e-26
 Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 25/243 (10%)

Query: 19  QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
               L     +  VL+ V+ ++ SGE V LLGRSG GKSTL R++ GL SPS G V ++G
Sbjct: 14  AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73

Query: 79  KKI--------KDPPKDISVVFQTF--ALFPWLTVLENVELGLK-AKGIDKEERRKRALS 127
           + +        K   +DI +VFQ    A+ P  TV E +   L+    +DK ER  RA  
Sbjct: 74  EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE 133

Query: 128 AIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
            +  + LD         ++SGG LQRV  ARA  V P LL++DE  S LD++    L+  
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV----LQAG 189

Query: 187 LIDLW--IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV----LISIPHPR 240
           +I L   ++ +    + L +TH++      C RV+V  +  G+I E       ++   P 
Sbjct: 190 VIRLLKKLQQQFGT-ACLFITHDLRLVERFCQRVMVMDN--GQIVETQPVGDKLTFSSPA 246

Query: 241 NRL 243
            R+
Sbjct: 247 GRV 249


>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
           Provisional.
          Length = 233

 Score =  114 bits (287), Expect = 5e-26
 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 14/210 (6%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL+  ++C+ +    +  +  VL  V+F++  GE++ ++G SGSGKSTLL ++ GL +P+
Sbjct: 5   LLQCDNLCKRYQEGSVQTD--VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62

Query: 71  SGQVLFKGK---------KIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
           SG V+F G+         K +   + +  ++Q   L P  T LENV + L        E 
Sbjct: 63  SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEI 122

Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
             RAL  +  +GL+   +   +E+SGG  QRV  ARA V  P L+L DEP   LD   A+
Sbjct: 123 NSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
           ++   L +L    RL   + L+VTH+++ A
Sbjct: 183 SIFQLLGEL---NRLQGTAFLVVTHDLQLA 209


>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
           Provisional.
          Length = 242

 Score =  114 bits (287), Expect = 5e-26
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 15/172 (8%)

Query: 20  SFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
           S  L  I+   G    L  +  +   GE + LLG SG+GKS+LLR++  L  P SG +  
Sbjct: 2   SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61

Query: 77  KG-----------KKIKDPPKDISVVFQTFALFPWLTVLEN-VELGLKAKGIDKEERRKR 124
            G           K I++  +++ +VFQ + L+P LTV +N +E   +  G+ K++   R
Sbjct: 62  AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR 121

Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
           A   ++ + L  +       +SGG  QRV  ARA ++ P +LL DEP +ALD
Sbjct: 122 AEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score =  113 bits (285), Expect = 8e-26
 Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 37/241 (15%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-- 68
            +EI+++   +      G    L  +N ++   ++  L+G SG GKSTLLR +  +    
Sbjct: 1   AIEIENLNLFY------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54

Query: 69  PS---SGQVLFKGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-D 117
           P     G+VLF G+ I D   D       + +VFQ    FP +++ +N+  G +  GI D
Sbjct: 55  PGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKD 113

Query: 118 KEERRKRALSAIDLIGL--DGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
           K+E  +    ++    L  +  +  H     +SGG  QR+  ARA  V P +LL+DEP S
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173

Query: 174 ALD---VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           ALD       E L  +L   +        ++++VTHN+++A  + DR   F    G + E
Sbjct: 174 ALDPIATGKIEELIQELKKKY--------TIVIVTHNMQQAARISDRTAFFYD--GELVE 223

Query: 231 E 231
            
Sbjct: 224 Y 224


>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
           family.  Members of this protein family are found mostly
           in the Cyanobacteria, but also in the Planctomycetes.
           Cyanobacterial examples are involved in heterocyst
           formation, by which some fraction of members of the
           colony undergo a developmental change and become capable
           of nitrogen fixation. The DevBCA proteins are thought
           export of either heterocyst-specific glycolipids or an
           enzyme essential for formation of the laminated layer
           found in heterocysts.
          Length = 220

 Score =  112 bits (281), Expect = 2e-25
 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 18/188 (9%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
           VL  +N  ++ GEIV L G SGSGK+TLL +I GL S   G +   G+++    +     
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 88  ----ISVVFQTFALFPWLTVLENVELGLK-AKGIDKEERRKRALSAIDLIGLDGFESAHT 142
               I  +FQ   L  +LT  +NV++ L+    +  +E R+RA + ++ +GL      + 
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139

Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE--- 199
             +SGG  QRV  ARA V  P L+L DEP +ALD  +      D+++L    +L  E   
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR----DVVELM--QKLAREQGC 193

Query: 200 SMLMVTHN 207
           ++L+VTH+
Sbjct: 194 TILIVTHD 201


>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score =  111 bits (279), Expect = 4e-25
 Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 22/217 (10%)

Query: 38  FNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFAL 97
            +   GE++GLLG +G+GK+TLLR I GL+ P+ G V   G       + I  V Q    
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHE- 59

Query: 98  FPW---LTVLENVELGLKAKGIDKEERRKRA-----LSAIDLIGLDGFESAHTTEISGGM 149
           F W   ++V   V  G +   I    R   A       A+  +GL         E+SGG 
Sbjct: 60  FAWDFPISVAHTVMSG-RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQ 118

Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209
            QRV  ARA    PS+LL+DEPF+ LD+ T E L    I+L   G     ++LM TH++ 
Sbjct: 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG----TAILMTTHDLA 174

Query: 210 EAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE 246
           +A+  CDRV++ +   GR+     I+   P+    P 
Sbjct: 175 QAMATCDRVVLLN---GRV-----IADGTPQQLQDPA 203


>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
           protein; Provisional.
          Length = 648

 Score =  110 bits (276), Expect = 1e-24
 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 25/257 (9%)

Query: 11  LLEIQDICQSFSLKKISGN--LLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
           LLE++DI +S+     SG   + VL  ++ ++ +GE+V ++G SGSGKSTL+ I+  L  
Sbjct: 4   LLELKDIRRSYP----SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK 59

Query: 69  PSSGQVLFKGKKIKDPPKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE 119
           P+SG     G+ +     D            +FQ + L   LT  +NVE+     G++++
Sbjct: 60  PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK 119

Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
           +R  RA   +  +GL+       +++SGG  QRV  ARA +    ++L DEP  ALD  +
Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179

Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS-----SNPGRIAEEVLI 234
            E +   L  L   G     ++++VTH+ + A    +RV+         NP    +  + 
Sbjct: 180 GEEVMAILHQLRDRG----HTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKVNVA 234

Query: 235 SIPHPRNRLSPEFRQIV 251
               P    +  +RQ V
Sbjct: 235 GGTEPVVNTASGWRQFV 251


>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
           Unfortunately, the gene symbol nomenclature adopted
           based on this operon in B. subtilis assigns cydC to the
           third gene in the operon where this gene is actually
           homologous to the E. coli cydD gene. We have chosen to
           name all homologs in this family in accordance with the
           precedence of publication of the E. coli name, CydD.
          Length = 529

 Score =  109 bits (274), Expect = 2e-24
 Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 29/205 (14%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
            L  V+F V  GE V L+G SG+GKSTLL ++ G V P+ G +   G  + D   D    
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396

Query: 88  -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA------ 140
            I+ V Q   LF   T+ EN+ L       D E RR     A++  GLD F +A      
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLARPD-ASDAEIRR-----ALERAGLDEFVAALPQGLD 449

Query: 141 -----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
                    +SGG  QR+  ARAF+    LLL+DEP + LD  T E L T+ +    +GR
Sbjct: 450 TLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET-EALVTEALRALAQGR 508

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220
               ++L+VTH +  A    DR++V
Sbjct: 509 ----TVLLVTHRLALAERA-DRIVV 528


>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
           subunit; Provisional.
          Length = 257

 Score =  108 bits (272), Expect = 2e-24
 Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 28/230 (12%)

Query: 23  LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI- 81
           L K  G   VL  V+   ++G+++ ++G SGSGKST LR I  L  PS G ++  G+ I 
Sbjct: 11  LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70

Query: 82  --KDPPKDISV---------------VFQTFALFPWLTVLENV-ELGLKAKGIDKEERRK 123
             +D    + V               VFQ F L+  +TVLENV E  ++  G+ K+E R+
Sbjct: 71  LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE 130

Query: 124 RALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE 181
           RA+  +  +G+D   +  +   +SGG  QRV  ARA  + P +LL DEP SALD  L  E
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
            LR  +  L  EG+    +M++VTH +  A  +   V+    + G+I EE
Sbjct: 191 VLRI-MQQLAEEGK----TMVVVTHEMGFARHVSSHVIFL--HQGKIEEE 233


>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
           This model describes the ATP binding subunit of the
           multisubunit cobalt transporter in bacteria and its
           equivalents in archaea. The model is restricted to ATP
           subunit that is a part of the cobalt transporter, which
           belongs to the ABC transporter superfamily (ATP Binding
           Cassette). The model excludes ATP binding subunit that
           are associated with other transporters belonging to ABC
           transporter superfamily. This superfamily includes two
           groups, one which catalyze the uptake of small
           molecules, including ions from the external milieu and
           the other group which is engaged in the efflux of small
           molecular weight compounds and ions from within the
           cell. Energy derived from the hydrolysis of ATP drive
           the both the process of uptake and efflux.
          Length = 190

 Score =  107 bits (268), Expect = 8e-24
 Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 20/192 (10%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
           VL  +NF    GE++ LLG +G+GKSTLL  + GL+ P SG VL  G+ +    K     
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66

Query: 88  ---ISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
              + +VFQ      FA      V ++V  G    G+ + E  +R   A+  +G  G   
Sbjct: 67  RQRVGLVFQDPDDQLFA----ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE 122

Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
             T  +SGG  +RV  A A  + P +LL+DEP + LD    E +   L  L  EG     
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM---- 178

Query: 200 SMLMVTHNIEEA 211
           ++++ TH+++ A
Sbjct: 179 TVVISTHDVDLA 190


>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
           YbbA; Provisional.
          Length = 228

 Score =  106 bits (266), Expect = 1e-23
 Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 13/199 (6%)

Query: 30  LLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-------- 81
           L +L  V   V  GE + L+G SGSGKSTLL I+AGL   SSG+V   G+ +        
Sbjct: 23  LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82

Query: 82  -KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140
            K   K +  VFQ+F L P L  LENVEL    +G    + R  A + ++ +GL      
Sbjct: 83  AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH 142

Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
              ++SGG  QRV  ARAF   P +L  DEP   LD  T + +   L  L    R    +
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL---NREHGTT 199

Query: 201 MLMVTHNIEEAVLMCDRVL 219
           +++VTH+++ A   CDR L
Sbjct: 200 LILVTHDLQLAA-RCDRRL 217


>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score =  106 bits (266), Expect = 1e-23
 Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 17/208 (8%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF-------KGKKIKDPP 85
           LD VN  +  GE VGL+G +GSGKSTL++ + GL+ P+SG+++        K  K+ D  
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82

Query: 86  KDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD--GFESAH 141
           K + +VFQ   + LF   T+ +++  G    G+ +EE   R   A++++GLD   ++   
Sbjct: 83  KKVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141

Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
             E+SGG  +RV  A    + P +L++DEP + LD    + +   + +L  E  + I   
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI--- 198

Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
           ++V+H++E+   + DR++V   N G+  
Sbjct: 199 ILVSHSMEDVAKLADRIIVM--NKGKCE 224


>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
          Length = 222

 Score =  105 bits (263), Expect = 3e-23
 Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 12/184 (6%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP-- 85
           L  V F++  GE+  L G SG+GKSTLL++I G+  PS+G++ F G  I     ++ P  
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77

Query: 86  -KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE 144
            + I ++FQ   L    TV +NV + L   G   ++ R+R  +A+D +GL         +
Sbjct: 78  RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137

Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
           +SGG  QRVG ARA V  P++LL DEP   LD    + L   ++ L+ E      ++LM 
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILRLFEEFNRVGVTVLMA 193

Query: 205 THNI 208
           TH+I
Sbjct: 194 THDI 197


>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 275

 Score =  105 bits (263), Expect = 3e-23
 Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 22/212 (10%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
            L  +NF    GE+V LLG +G+GKSTL     G++ P+SG+VL KG+ IK   K     
Sbjct: 17  ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76

Query: 88  ---ISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
              + +VFQ      FA  P  TV E+V  G    G+ KEE  KR   A+  +G++GFE+
Sbjct: 77  RKTVGIVFQNPDDQLFA--P--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN 132

Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
                +SGG  +RV  A    + P ++++DEP S LD + A  +   L DL  EG   I 
Sbjct: 133 KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIII 192

Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           S    TH+++   +  D+V V S   G+I +E
Sbjct: 193 S----THDVDLVPVYADKVYVMSD--GKIIKE 218


>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score =  104 bits (261), Expect = 5e-23
 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 12/195 (6%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPKD 87
           L+ V+F+V  GE + ++G +GSGKST +R+I GL+   SGQ++  G  +      D    
Sbjct: 23  LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82

Query: 88  ISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
           I +VFQ     F   TV ++V  GL+ KGI  EE ++R   A++L+G+  F+      +S
Sbjct: 83  IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLS 142

Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVT 205
           GG  QRV  A A  + P ++++DE  S LD       R +LI      R   + +++ +T
Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLD----PEGRLELIKTIKGIRDDYQMTVISIT 198

Query: 206 HNIEEAVLMCDRVLV 220
           H+++E V + DRVLV
Sbjct: 199 HDLDE-VALSDRVLV 212


>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
           YrbF; Provisional.
          Length = 269

 Score =  103 bits (258), Expect = 1e-22
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           L++++ +  SF+     GN  + D ++  V  G+I  ++G SG GK+TLLR+I G ++P 
Sbjct: 7   LVDMRGV--SFT----RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60

Query: 71  SGQVLFKGKKIK--------DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE-R 121
            G++LF G+ I            K +S++FQ+ ALF  + V +NV   L+          
Sbjct: 61  HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL 120

Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
               +  ++ +GL G      +E+SGGM +R   ARA  + P L++ DEPF   D +T
Sbjct: 121 HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178


>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
           ABC transporter, ATP-binding subunit.  Model TIGR03731
           represents the family of all lantibiotics related to
           gallidermin, including epidermin, mutatin, and nisin.
           This protein family describes the ATP-binding subunit of
           a gallidermin/epidermin class lantibiotic protection
           transporter. It is largely restricted to
           gallidermin-family lantibiotic biosynthesis and export
           cassettes, but also occurs in orphan transporter
           cassettes in species that lack candidate lantibiotic
           precursor and synthetase genes.
          Length = 223

 Score =  102 bits (256), Expect = 2e-22
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 11/174 (6%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           LE +++ + F      G    ++ ++  V    + GLLG +G+GKSTLL++I G++ P+S
Sbjct: 1   LETKNLSKRF------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS 54

Query: 72  GQVLFKGKK-IKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
           G+++F G    +     I  + ++  L+  LT  EN+++     G+       R    ++
Sbjct: 55  GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS----RIDEVLN 110

Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
           ++ L         + S GM QR+G A A +  P LL++DEP + LD +  + LR
Sbjct: 111 IVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164


>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
          Length = 306

 Score =  102 bits (256), Expect = 2e-22
 Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 19/217 (8%)

Query: 23  LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
           ++K  G+ LV+D ++F+V  GE  GLLG +G+GK+T LR++ GL  P +G +   G+ + 
Sbjct: 13  VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72

Query: 83  DPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
              +     + VV Q   L P  TV EN+ +  +  G+     R      ++   L+   
Sbjct: 73  SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIEG 194
            A   E+SGGM +R+  ARA V  P +L++DEP + LD     L  E LR+    L   G
Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS----LLARG 188

Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230
           +    ++L+ TH +EEA  +CDR+ V     GR IAE
Sbjct: 189 K----TILLTTHFMEEAERLCDRLCVIEE--GRKIAE 219


>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
           Provisional.
          Length = 340

 Score =  102 bits (255), Expect = 2e-22
 Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 19/218 (8%)

Query: 22  SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
            + K  G+  V++ ++F V+SGE  GLLG +G+GKST+ R+I G+ SP +G++   G  +
Sbjct: 46  GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV 105

Query: 82  KDPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
               +     I VV Q   L    TV EN+ +  +  G+   E      S ++   L+  
Sbjct: 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK 165

Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIE 193
             A  +++SGGM +R+  ARA +  P LL++DEP + LD     L  E LR+    L   
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS----LLAR 221

Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230
           G+    ++L+ TH +EEA  +CDR+ V  +  GR IAE
Sbjct: 222 GK----TILLTTHFMEEAERLCDRLCVLEA--GRKIAE 253


>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
           YejF; Provisional.
          Length = 529

 Score =  101 bits (253), Expect = 5e-22
 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 32/233 (13%)

Query: 11  LLEIQDICQSFS-----LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKST----LLR 61
           LL+++ +  +F      LK+   + +V+  ++F +  GE +GL+G SGSGKST    LLR
Sbjct: 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334

Query: 62  IIAGLVSPSSGQVLFKG--------KKIKDPPKDISVVFQ--TFALFPWLTVLENVELGL 111
           +I      S G++ F G        +++      I VVFQ    +L P L VL+ +E GL
Sbjct: 335 LIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389

Query: 112 KA--KGIDKEERRKRALSAIDLIGLDGFESAH--TTEISGGMLQRVGFARAFVVFPSLLL 167
           +     +   +R ++ ++ ++ +GLD  E+ H    E SGG  QR+  ARA ++ PSL++
Sbjct: 390 RVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQRQRIAIARALILKPSLII 448

Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
           +DEP S+LD      +   L  L  + +L   + L ++H++     +C +V+V
Sbjct: 449 LDEPTSSLDKTVQAQILALLKSLQQKHQL---AYLFISHDLHVVRALCHQVIV 498



 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 40/261 (15%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKS-TLLRIIAGLVSP 69
           LL I+++  S + ++      V++ V+  + +GE + L+G SGSGKS T L I+  L SP
Sbjct: 5   LLAIENL--SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62

Query: 70  S----SGQVLFKGKKIKDPPK---------DISVVFQ--TFALFPWLTVLENVELGLKA- 113
                SG + F G+ +    +          I+++FQ    +L P    L  +E  L   
Sbjct: 63  PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNP----LHTLEKQLYEV 118

Query: 114 ----KGIDKEERRKRALSAIDLIGL---DGFESAHTTEISGGMLQRVGFARAFVVFPSLL 166
               +G+ +E  R   L+ +D +G+       + +  ++SGG  QRV  A A +  P LL
Sbjct: 119 LSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178

Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPG 226
           + DEP +ALDV     +   L +L  E  +    +L +THN+     + DRV V  +  G
Sbjct: 179 IADEPTTALDVSVQAQILQLLRELQQELNM---GLLFITHNLSIVRKLADRVAVMQN--G 233

Query: 227 RIAEE----VLISIP-HPRNR 242
           R  E+     L S P HP  +
Sbjct: 234 RCVEQNRAATLFSAPTHPYTQ 254


>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score =  101 bits (252), Expect = 5e-22
 Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 23/203 (11%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI---------KD 83
           LD ++F +  G  V L+G +GSGKSTL++    L+ PSSG +   G  I         K 
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82

Query: 84  PPKDISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
             K +S+VFQ    FP       TVL++VE G K  G  ++E +++AL  +  +GL    
Sbjct: 83  LRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138

Query: 139 SAHTT-EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
            + +  E+SGG ++RV  A      P +L +DEP + LD       R +++ L+ + +  
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG----RKEMMQLFKDYQKA 194

Query: 198 IESMLMVTHNIEEAVLMCDRVLV 220
             ++++VTHN+++     D VLV
Sbjct: 195 GHTVILVTHNMDDVAEYADDVLV 217


>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score =  100 bits (250), Expect = 8e-22
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 33/230 (14%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII--AGLVS 68
           +L++ D+   ++ KK       L+ V+ +    EI  L+G SGSGKSTLLR I     ++
Sbjct: 5   ILQVSDLSVYYNKKK------ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN 58

Query: 69  PS---SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-D 117
           P    +G +++ G  I  P        K+I +VFQ    FP +++ ENV  GL+ KGI D
Sbjct: 59  PEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKD 117

Query: 118 KE------ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171
           K+      E+  +  S  D +     +SA    +SGG  QRV  AR     P ++L+DEP
Sbjct: 118 KQVLDEAVEKSLKGASIWDEVKDRLHDSA--LGLSGGQQQRVCIARVLATSPKIILLDEP 175

Query: 172 FSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
            SALD ++A  +   L+ L  +      +ML+VT ++++A  + DR   F
Sbjct: 176 TSALDPISAGKIEETLLGLKDD-----YTMLLVTRSMQQASRISDRTGFF 220


>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
           PQQ-dependent alcohol dehydrogenase system.  Members of
           this protein family are the ATP-binding subunit of an
           ABC transporter system that is associated with PQQ
           biosynthesis and PQQ-dependent alcohol dehydrogenases.
           While this family shows homology to several efflux ABC
           transporter subunits, the presence of a periplasmic
           substrate-binding protein and association with systems
           for catabolism of alcohols suggests a role in import
           rather than detoxification.
          Length = 236

 Score =  100 bits (250), Expect = 1e-21
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 16/221 (7%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           LE+  +  ++  ++       LD V+F V  GE V LLG +G+GKSTL  ++  L     
Sbjct: 2   LEVAGLSFAYGARR------ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE 55

Query: 72  GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
           GQ+   G  ++  P+     + VVFQ   L   L+V +N+       G+ + E R+R  +
Sbjct: 56  GQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAA 115

Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
            +  +GL         E++GG  +RV  ARA +  P+LLL+DEP   LD  +   +   +
Sbjct: 116 LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175

Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
             L  +  L   S+L  TH ++E +   DR++V   + GR+
Sbjct: 176 RALCRDQGL---SVLWATHLVDE-IEADDRLVVL--HRGRV 210


>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
            Members of this family are the PhnL protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated C-P lysase complex. This protein
           (PhnL) and the adjacent-encoded PhnK (TIGR02323)
           resemble transporter ATP-binding proteins but are
           suggested, based on mutatgenesis studies, to be part of
           this C-P lyase complex rather than part of a transporter
           per se.
          Length = 224

 Score = 99.4 bits (248), Expect = 2e-21
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 19/228 (8%)

Query: 11  LLEIQDICQSFSLKKISG-NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
           LLE++D+ ++F+L +  G  L VL  V+  V++GE V L G SG+GKSTLL+ +     P
Sbjct: 1   LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP 60

Query: 70  SSGQVLFK--GKKI---KDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGI 116
            SG++L +  G  +   +  P        K I  V Q   + P ++ LE V   L  +G+
Sbjct: 61  DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV 120

Query: 117 DKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
            +E  R RA   +  + +            SGG  QRV  AR F+    +LL+DEP ++L
Sbjct: 121 PREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180

Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
           D       R  +++L  E +    +++ + H+ E   L+ DRV+  + 
Sbjct: 181 D----AANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVTP 224


>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
           Provisional.
          Length = 501

 Score = 99.2 bits (248), Expect = 2e-21
 Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 13/198 (6%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP-PKD---- 87
           LD ++F+  +G++  L+G +G+GKSTLL+I++G   P +G +L  G++++          
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79

Query: 88  -ISVVFQTFALFPWLTVLENVELG-LKAKG--IDKEERRKRALSAIDLIGLDGFESAHTT 143
            +++++Q   L P +TV EN+ LG L  KG  +++      A   ++ +G+D        
Sbjct: 80  GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK 139

Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
            +S G  Q V  A+A      ++  DEP S+L     E L   + +L  EGR+    +L 
Sbjct: 140 YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV----ILY 195

Query: 204 VTHNIEEAVLMCDRVLVF 221
           V+H +EE   +CD + VF
Sbjct: 196 VSHRMEEIFALCDAITVF 213



 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 48/227 (21%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-DPPKDISVVFQT 94
           ++F+V +GEIVGL G  G+G+S L++++ G    ++GQV   GK I    P+D   +   
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRD--AIRAG 329

Query: 95  FAL----------FPWLTVLENVELG-----LKAKGI-------DKEERRKRAL-----S 127
             L           P  +V +N+ +      L+A  +       +  +R  R+L     S
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389

Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
              LI            +SGG  Q+    R       ++L+DEP   +DV  A++   ++
Sbjct: 390 REQLIMN----------LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDV-GAKHEIYNV 438

Query: 188 I-DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233
           I +L  +G     ++L V+ ++ E + + DR++V     GRIA E+ 
Sbjct: 439 IYELAAQGV----AVLFVSSDLPEVLGVADRIVVMRE--GRIAGELA 479


>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
           protein OppF; Provisional.
          Length = 331

 Score = 99.0 bits (247), Expect = 2e-21
 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 23/230 (10%)

Query: 11  LLEIQDICQSFSLKKISG-------NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII 63
           LLE+ D+   F +K            L  +D V   +  GE +G++G SG GKST  R I
Sbjct: 8   LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 67

Query: 64  AGLVSPSSGQVLFKGK--------KIKDPPKDISVVFQT--FALFPWLTVLENVELGLKA 113
            GLV  + G+V + GK        + +    DI ++FQ    +L P +T+ E +   L+ 
Sbjct: 68  IGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127

Query: 114 --KGIDKEERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDE 170
               + ++E + R  + +  +GL     + +  E SGG  QR+G ARA ++ P L++ DE
Sbjct: 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 187

Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
           P SALDV     +   L  L  E  L   S++ + H++     + DRVLV
Sbjct: 188 PVSALDVSIQAQVVNLLQQLQREMGL---SLIFIAHDLAVVKHISDRVLV 234


>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 207

 Score = 99.2 bits (248), Expect = 2e-21
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 28/191 (14%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP--- 84
           G  ++   ++F +++GE + L G +GSGK+TLLR+IAGL+ P++G +   G  I DP   
Sbjct: 13  GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72

Query: 85  -------PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
                   ++        A+ P LTV EN+E      G           +A++ +GL   
Sbjct: 73  EACHYLGHRN--------AMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPL 120

Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
                  +S G  +RV  AR  V    + ++DEP +ALD   A  L  +L    I   L 
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA-AAVALFAEL----IRAHLA 175

Query: 198 IESM-LMVTHN 207
              + +  TH 
Sbjct: 176 QGGIVIAATHI 186


>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
           ATP-binding protein.  This small clade of ABC-type
           transporter ATP-binding protein components is found as a
           three gene cassette along with a periplasmic
           substrate-binding protein (TIGR03868) and a permease
           (TIGR03869). The organisms containing this cassette are
           all Actinobacteria and all contain numerous genes
           requiring the coenzyme F420. This model was defined
           based on five such organisms, four of which are lacking
           all F420 biosynthetic capability save the final
           side-chain polyglutamate attachment step (via the gene
           cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
           marine actinobacterium PHSC20C1 this cassette is in an
           apparent operon with the cofE gene and, in PHSC20C1,
           also with a F420-dependent glucose-6-phosphate
           dehydrogenase (TIGR03554). Based on these observations
           we propose that this ATP-binding protein is a component
           of an F420-0 (that is, F420 lacking only the
           polyglutamate tail) transporter.
          Length = 256

 Score = 98.3 bits (245), Expect = 3e-21
 Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 15/211 (7%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK- 86
           G  L++D V+     G + GLLG +GSGKSTLLR++AG + P +G V   G  +    + 
Sbjct: 12  GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71

Query: 87  ----DISVVFQTFALFPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLDGFE 138
                +++V Q       LTV + V LG          D          A+    L    
Sbjct: 72  ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
               + +SGG  QRV  ARA    P LLL+DEP + LDV         + +L   G   +
Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191

Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
            ++    H++  A   CD V+V     GR+ 
Sbjct: 192 AAL----HDLNLAASYCDHVVVLDG--GRVV 216


>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 98.1 bits (245), Expect = 4e-21
 Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 8   DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
            + +++++++  S+     +     L  V+F ++ GE V +LG +GSGKST+ +I+ GL+
Sbjct: 4   KSVMIKVENVSFSYP----NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59

Query: 68  SPSSGQVLFKGKKI-----KDPPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEER 121
            P SG++   G  I     K+  K I ++FQ     F   TV +++  GL+ K +  ++ 
Sbjct: 60  KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119

Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
           +         +G++ +       +SGG  QRV  A    + P +++ DE  S LD     
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
            ++  ++DL    +  + S   +TH+++EA+L  D+V+VFS
Sbjct: 180 EIKKIMVDLRKTRKKTLIS---ITHDMDEAIL-ADKVIVFS 216


>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
           Provisional.
          Length = 352

 Score = 97.6 bits (244), Expect = 6e-21
 Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 18/195 (9%)

Query: 35  KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG------QVLFK-GKKIKDPP-- 85
            VN  + +  I  + GRSG+GK++L+  I+GL  P  G      +VLF   K I  PP  
Sbjct: 16  TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75

Query: 86  KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
           + I  VFQ   LFP   V  N+  G+        +        + L+G++     +   +
Sbjct: 76  RRIGYVFQDARLFPHYKVRGNLRYGMAKS--MVAQ----FDKIVALLGIEPLLDRYPGSL 129

Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
           SGG  QRV   RA +  P LLLMDEP ++LD+     L   L  L  E  +PI   L V+
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI---LYVS 186

Query: 206 HNIEEAVLMCDRVLV 220
           H+++E + + DRV+V
Sbjct: 187 HSLDEILRLADRVVV 201


>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
           protein NodI.  This model does not recognize the highly
           divergent NodI from Azorhizobium caulinodans.
          Length = 303

 Score = 97.3 bits (242), Expect = 7e-21
 Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 17/216 (7%)

Query: 23  LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
           + K  G+ +V++ ++F ++ GE  GLLG +G+GKST+ R++ G++SP  G++   G+ + 
Sbjct: 10  VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69

Query: 83  DPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
              +     I VV Q   L P  TV EN+ +  +  G+   E      S ++   L+   
Sbjct: 70  SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 129

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIEG 194
                 +SGGM +R+  ARA +  P LL++DEP + LD     L  E LR+    L   G
Sbjct: 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS----LLARG 185

Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           +    ++L+ TH +EEA  +CDR+ V  S   +IAE
Sbjct: 186 K----TILLTTHFMEEAERLCDRLCVLESGR-KIAE 216


>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
           This family represents the NikD subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
           NikD and NikE are homologous.
          Length = 230

 Score = 97.1 bits (242), Expect = 8e-21
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 18/214 (8%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKST----LLRIIAGLVSPSSGQVLFKGKKI---KD 83
           LV D +N ++  GE++ L+G SGSGKS     +L ++   ++ +SG++L  G+ +     
Sbjct: 1   LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI 59

Query: 84  PPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE--- 138
             + I+ + Q    A  P  T+  +    L++ G   ++ R   L A++ +GL   E   
Sbjct: 60  RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL 119

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
             +  ++SGGMLQRV  A A ++ P  L+ DEP + LDV+    +   L+    +     
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV-LKLLRELRQLFGT- 177

Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
             +L++TH++     + D V V     GRI E  
Sbjct: 178 -GILLITHDLGVVARIADEVAVMDD--GRIVERG 208


>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
           Provisional.
          Length = 330

 Score = 97.1 bits (242), Expect = 9e-21
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 30/252 (11%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL+++D+  +FS     G++  ++ +NF++ +GE +G++G SGSGKS     + GL++ +
Sbjct: 12  LLDVKDLRVTFSTP--DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69

Query: 71  ---SGQVLFKGKKIKDPP---------KDISVVFQ--TFALFPWLTVLENV-ELGLKAKG 115
               G   F G++I + P         + IS++FQ    +L P++ V E + E+ +  KG
Sbjct: 70  GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129

Query: 116 IDKE---ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
           + K    E   R L A+ +         +  E SGGM QRV  A A +  P LL+ DEP 
Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189

Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI---- 228
           +ALDV     + T L +L  E    I   +M+TH++     +CD+VLV  +  GR     
Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAI---IMITHDLGVVAGICDKVLVMYA--GRTMEYG 244

Query: 229 -AEEVLISIPHP 239
            A +V     HP
Sbjct: 245 NARDVFYQPSHP 256


>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
           protein UrtE.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 230

 Score = 96.8 bits (242), Expect = 9e-21
 Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 24/171 (14%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           LE+ ++   +      G   +L  V+  V  GE+  +LGR+G GK+TLL+ + GL+   S
Sbjct: 1   LEVSNLNVYY------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS 54

Query: 72  GQVLFKGKKI-KDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
           G +   G+ I K PP       I+ V Q   +FP LTV EN+  GL A       RR R 
Sbjct: 55  GSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP-----RRSRK 109

Query: 126 LSAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171
           +   D I      L         ++SGG  Q++  ARA V  P LLL+DEP
Sbjct: 110 I--PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158


>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit.  The
           gene pair cydCD encodes an ABC-family transporter in
           which each gene contains an N-terminal membrane-spanning
           domain (pfam00664) and a C-terminal ATP-binding domain
           (pfam00005). In E. coli these genes were discovered as
           mutants which caused the terminal heme-copper oxidase
           complex cytochrome bd to fail to assemble. Recent work
           has shown that the transporter is involved in export of
           redox-active thiol compounds such as cysteine and
           glutathione. The linkage to assembly of the cytochrome
           bd complex is further supported by the conserved operon
           structure found outside the gammaproteobacteria
           (cydABCD) containing both the transporter and oxidase
           genes components. The genes used as the seed members for
           this model are all either found in the
           gammproteobacterial context or the CydABCD context. All
           members of this family scoring above trusted at the time
           of its creation were from genomes which encode a
           cytochrome bd complex.
          Length = 529

 Score = 96.7 bits (241), Expect = 1e-20
 Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 19/191 (9%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
           G+  VLD V+ ++  GE V +LG SGSGKSTLL ++ GL+ P  G+V   G  +     +
Sbjct: 346 GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDE 405

Query: 88  ISVVFQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAI---DLI-----GLDG 136
           +      FA    L   TV +N+ LG        EE    AL  +   D +     GLD 
Sbjct: 406 LRRRISVFAQDAHLFDTTVRDNLRLG--RPDATDEE-LWAALERVGLADWLRSLPDGLDT 462

Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
                   +SGG  QR+  ARA +    +LL+DEP   LD  T   L  DL+   + G+ 
Sbjct: 463 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKT 521

Query: 197 PIESMLMVTHN 207
               ++++TH+
Sbjct: 522 ----VVVITHH 528


>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 241

 Score = 96.4 bits (240), Expect = 1e-20
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 16/205 (7%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86
           +L  ++     G I  ++G SG+GKSTL+++I  L+ P+ G +L  G  IK     D  +
Sbjct: 18  ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77

Query: 87  DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG-FESAHTTEI 145
            I +VFQ   LF   TV +N+E G   KG    E+       + ++GL+  + +     +
Sbjct: 78  KIGMVFQQPHLFEG-TVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNL 132

Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
           SGG  QRV  AR     P +LL+DEP SALD  + E +   ++ L  +  L +   + +T
Sbjct: 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV---IWIT 189

Query: 206 HNIEEAVLMCDRVLVFSSNPGRIAE 230
           HN+E+A  + D       N G + E
Sbjct: 190 HNMEQAKRIGDYTAFL--NKGILVE 212


>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 305

 Score = 96.3 bits (240), Expect = 1e-20
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 42/250 (16%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           +++++I + F  KK+   L  LD V+  ++ GE + ++G++GSGK+T +  +  L+ P +
Sbjct: 3   IKVKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61

Query: 72  GQVLF-----------------------------KGKKIKDPPKDISVVFQTFA---LFP 99
           G + +                             K KKIK+  + + VVFQ FA   LF 
Sbjct: 62  GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ-FAEYQLFE 120

Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARA 158
             T+ +++  G  + G+ KEE +KRA   I+L+GLD  +      E+SGG  +RV  A  
Sbjct: 121 -QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179

Query: 159 FVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
             + P  L+ DEP + LD    + +     +L  +G+    ++++VTH+++  +    R 
Sbjct: 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK----TIILVTHDLDNVLEWTKRT 235

Query: 219 LVFSSNPGRI 228
           + F    G+I
Sbjct: 236 IFF--KDGKI 243


>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 285

 Score = 96.0 bits (239), Expect = 2e-20
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 39/218 (17%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIK 82
           G+   LD V+ ++   ++  ++G SG GKST LR I  +      +   G++ F+GK + 
Sbjct: 50  GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109

Query: 83  DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDK------EERRKRAL--- 126
           D   D       I +VFQ    FP  ++ +NV  GLK +G D       EE  +RA    
Sbjct: 110 DADVDPVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD 168

Query: 127 ---SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
                +D  GLD         +SGG  QR+  ARA    P ++LMDEP SALD +    +
Sbjct: 169 EVKDQLDSSGLD---------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI 219

Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
             DLI+   E      ++++VTHN+++A  + D+  VF
Sbjct: 220 E-DLIEELAEEY----TVVIVTHNMQQAARISDKTAVF 252


>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 95.5 bits (238), Expect = 3e-20
 Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 12/205 (5%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPKD 87
           L  V+F+V  GE V ++G +GSGKSTL +++ GL+ P +G +   G  +      D  + 
Sbjct: 23  LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82

Query: 88  ISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
           + +VFQ     F   TV ++V  GL+  G+ +EE  +R   A+  +G++ F +     +S
Sbjct: 83  VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLS 142

Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206
           GG  QRV  A    + P ++++DE  S LD      +   +  L  +  +   ++L +TH
Sbjct: 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI---TVLSITH 199

Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEE 231
           +++EA    DRV+V   N G I EE
Sbjct: 200 DLDEA-AQADRVIVM--NKGEILEE 221


>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
          Length = 402

 Score = 93.8 bits (233), Expect = 8e-20
 Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 48/249 (19%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           +++ D+   F      G+  VLD V+ +V  G +VGL+G +G+GK+TLLR I G ++P++
Sbjct: 4   IDVSDLSVEF------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA 57

Query: 72  GQVLFKG------------KKIKDPPKDISVVFQTFALFPWLTVLENVELG----LKAKG 115
           G VL  G            +++   P+D S+ F+         V + VE+G         
Sbjct: 58  GTVLVAGDDVEALSARAASRRVASVPQDTSLSFE-------FDVRQVVEMGRTPHRSRFD 110

Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
              E  R     A++  G+  F     T +SGG  QRV  ARA      +LL+DEP ++L
Sbjct: 111 TWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL 170

Query: 176 D----VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI--- 228
           D    V T E +R  L+D   +G+  + ++    H+++ A   CD +++ +   GR+   
Sbjct: 171 DINHQVRTLELVR-RLVD---DGKTAVAAI----HDLDLAARYCDELVLLAD--GRVRAA 220

Query: 229 --AEEVLIS 235
               +VL +
Sbjct: 221 GPPADVLTA 229


>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 93.7 bits (233), Expect = 8e-20
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 30/234 (12%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           L+E +D+C S+S     G+   L+ +NF       + ++G +G+GKSTL R   G++ P+
Sbjct: 3   LIETRDLCYSYS-----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57

Query: 71  SGQVLFKG-----KKIKDPPKDISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEE 120
           SG VL +G     + I++  K + +VFQ      F+     TV +++  G    G+D+E 
Sbjct: 58  SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS----PTVEQDIAFGPINLGLDEET 113

Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
              R  SA+ ++GL+         +SGG  +RV  A    + P +L++DEP + LD    
Sbjct: 114 VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG- 172

Query: 181 ENLRTDLIDLWIEGRLPIESMLMV---THNIEEAVLMCDRVLVFSSNPGRIAEE 231
                +LID      LP    + V   TH ++    M D + V   + GRI   
Sbjct: 173 ---VKELIDFL--NDLPETYGMTVIFSTHQLDLVPEMADYIYVM--DKGRIVAY 219


>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 283

 Score = 93.4 bits (232), Expect = 9e-20
 Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 18/221 (8%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           +L+++++  ++S          L  +N N+  GE+  +LG +G+GKSTL + + G++ PS
Sbjct: 5   ILKVEELNYNYS-----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59

Query: 71  SGQVLFKGKKIKDPPK-------DISVVFQT--FALFPWLTVLENVELGLKAKGIDKEER 121
           SG++LF GK I    K        + +VFQ     LF   +V ++V  G     + ++E 
Sbjct: 60  SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLPEDEV 118

Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
           RKR  +A+   G++  +   T  +S G  +RV  A   V+ P +L++DEP + LD +   
Sbjct: 119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
            +   L+++  E  L I   ++ TH+I+   L CD V V  
Sbjct: 179 EIMKLLVEMQKELGLTI---IIATHDIDIVPLYCDNVFVMK 216


>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 93.2 bits (232), Expect = 1e-19
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 40/231 (17%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLFKGKKIK 82
           G+   ++ VN N+    +   +G SG GKST+LR +  +  V P +   G+VL  G+ + 
Sbjct: 15  GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74

Query: 83  DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
            P        + I +VFQ    FP +++ +NV  GLK  G     R K+ L  +    L 
Sbjct: 75  GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG----VRNKKDLDELVEKSLR 130

Query: 136 GFESAHTTE---------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENL 183
           G    +  +         +SGG  QR+  ARA  V P +LLMDEP SALD    L  E+L
Sbjct: 131 GANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDL 190

Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS----SNPGRIAE 230
             +L   +        ++++VTHN+++A  + D+   F+      PGR+ E
Sbjct: 191 INELKQDY--------TIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233


>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 93.2 bits (232), Expect = 1e-19
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 41/220 (18%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82
           G+   L K+N ++   ++  L+G SG GKST LR +  +  + PS    G+VL  G+ I 
Sbjct: 14  GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73

Query: 83  DPPKDI-------SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
               D+        +VFQ    FP +++ +NV  G +  GI    + K+ L  I    L 
Sbjct: 74  KSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI----KDKKKLDEIVEKSLK 128

Query: 136 GF-----------ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAE 181
           G            +SA    +SGG  QR+  ARA  V P +LLMDEP SALD    L  E
Sbjct: 129 GAALWDEVKDRLKKSA--LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186

Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
            L  +L   +        ++++VTHN+++A  + D+   F
Sbjct: 187 ELIQELKKDY--------TIVIVTHNMQQASRISDKTAFF 218


>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
           YbbL; Provisional.
          Length = 225

 Score = 93.2 bits (232), Expect = 1e-19
 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 30/237 (12%)

Query: 6   IKDNR-LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
           +++N  LL++Q++       KI      L+ ++F++ +GE   + G SG GKSTLL+I+A
Sbjct: 1   MQENSPLLQLQNVGYLAGDAKI------LNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54

Query: 65  GLVSPSSGQVLFKGKKIKD-PP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKE 119
            L+SP+SG +LF+G+ I    P    + +S   QT  LF   TV +N+    + +    +
Sbjct: 55  SLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPD 113

Query: 120 ERRKRALSAIDLIGLDGFESAHTT------EISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
                         L+ F    T       E+SGG  QR+   R     P +LL+DE  S
Sbjct: 114 PAIFLD-------DLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166

Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           ALD     N+  ++I  ++  +    ++L VTH+ +E +   D+V+    + G + E
Sbjct: 167 ALDESNKHNV-NEIIHRYVREQNI--AVLWVTHDKDE-INHADKVITLQPHAGEMQE 219


>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
           transporter ATP-binding subunit GldA.  Members of this
           protein family are exclusive to the Bacteroidetes phylum
           (previously Cytophaga-Flavobacteria-Bacteroides). GldA
           is an ABC transporter ATP-binding protein (pfam00005)
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
           abolish the gliding phenotype. Gliding motility appears
           closely linked to chitin utilization in the model
           species Flavobacterium johnsoniae. Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility.
          Length = 301

 Score = 93.3 bits (232), Expect = 1e-19
 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 11/211 (5%)

Query: 22  SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
           SL K+ G    LD+V+F    G IVG LG +G+GKST ++II G + P SG V   G+ +
Sbjct: 7   SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66

Query: 82  KDPPKDISVVF----QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
              PK++        +   L+  + V E ++      G+  +  ++R    I+L+GL   
Sbjct: 67  LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126

Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
           +     ++S G  QRVG A+A +  P +L++DEP + LD      +R  + ++  +    
Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD---- 182

Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
            +++++ TH ++E   +CDRV++   N G+I
Sbjct: 183 -KTIILSTHIMQEVEAICDRVIII--NKGKI 210


>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 93.2 bits (231), Expect = 1e-19
 Identities = 72/208 (34%), Positives = 106/208 (50%), Gaps = 32/208 (15%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPPKD--- 87
           VN +V  G +  L+G SG GK+T LR I  +  ++P    +G++L  G+ I  P  D   
Sbjct: 23  VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82

Query: 88  ----ISVVFQTFALFPWLTVLENVELGLKAKGI-------DKEERRKRALSAIDLIGLDG 136
               + +VFQ    FP ++V +NV  GLK  GI       +  ER  R  +  D +  D 
Sbjct: 83  MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-DR 141

Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTDLIDLWIE 193
            ++   T +SGG  QR+  ARA  V P +LLMDEP SALD  +    E+L TDL      
Sbjct: 142 LKTP-ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---- 196

Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVF 221
               + ++++VTHN+ +A  + D    F
Sbjct: 197 ----VTTIIIVTHNMHQAARVSDTTSFF 220


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
           component A2.  The enzyme that catalyzes the final step
           in methanogenesis, methyl coenzyme M reductase, contains
           alpha, beta, and gamma chains. In older literature, the
           complex of alpha, beta, and gamma chains was termed
           component C, while this single chain protein was termed
           methyl coenzyme M reductase system component A2.
          Length = 520

 Score = 92.9 bits (231), Expect = 1e-19
 Identities = 59/206 (28%), Positives = 113/206 (54%), Gaps = 27/206 (13%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-GKKIKDPPKD---- 87
           +D V+  V  GEI G++G SG+GK+TL +IIAG++ P+SG+V  + G +  D  K     
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359

Query: 88  -------ISVVFQTFALFPWLTVLENVELGLKAKGID--KEERRKRALSAIDLIGLDGFE 138
                  I ++ Q + L+P  TVL+N+    +A G++   E  R +A+  + ++G D  +
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLT---EAIGLELPDELARMKAVITLKMVGFDEEK 416

Query: 139 SA-----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
           +      +  E+S G   RV  A+  +  P ++++DEP   +D +T    + D+    ++
Sbjct: 417 AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT----KVDVTHSILK 472

Query: 194 GRLPI-ESMLMVTHNIEEAVLMCDRV 218
            R  + ++ ++V+H+++  + +CDR 
Sbjct: 473 AREEMEQTFIIVSHDMDFVLDVCDRA 498



 Score = 87.6 bits (217), Expect = 6e-18
 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 57/277 (20%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--P 69
           +E++++ + F          VL  ++F +  GE++G+LGRSG+GKS L+ ++ G+    P
Sbjct: 1   IEVKNLTKKF------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP 54

Query: 70  SSGQVLF------KGKKIKDPPKD--------------------------------ISVV 91
           +SG++++      K   ++ P K                                 I+++
Sbjct: 55  TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIM 114

Query: 92  FQ-TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150
            Q TFAL+   TVL+NV   L+  G + +E   RA+  I+++ L    +    ++SGG  
Sbjct: 115 LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174

Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE- 209
           QRV  AR     P L L DEP   LD  TA+ +   L +      +   SM++ +H  E 
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI---SMVLTSHWPEV 231

Query: 210 ------EAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240
                 +A+ + +  +     P  +    +  +    
Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVE 268


>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
           subunit; Provisional.
          Length = 262

 Score = 92.8 bits (230), Expect = 1e-19
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 28/229 (12%)

Query: 14  IQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV----SP 69
           +Q I +   L K       L  V+ N+  GE+V LLG SGSGKSTLLR ++GL+    S 
Sbjct: 1   MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60

Query: 70  SSGQVLF------KGKKIKDPPKD---ISVVFQTFALFPWLTVLENVELGLKAKGID--- 117
            S   L       +G+  +D  K       +FQ F L   L+VLENV +G  A G     
Sbjct: 61  GSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG--ALGSTPFW 118

Query: 118 -------KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDE 170
                    E+++RAL A+  +G+  F     + +SGG  QRV  ARA +    ++L DE
Sbjct: 119 RTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178

Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
           P ++LD  +A  +   L D+     +   ++++  H ++ A+  C+R++
Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGI---TVVVTLHQVDYALRYCERIV 224


>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.  This
           model describes the cyt c biogenesis protein encoded by
           ccmA in bacteria. An exception is, an arabidopsis
           protein. Quite likely this is encoded by an organelle.
           Bacterial c-type cytocromes are located on the
           periplasmic side of the cytoplasmic membrane. Several
           gene products encoded in a locus designated as 'ccm' are
           implicated in the transport and assembly of the
           functional cytochrome C. This cluster includes genes:
           ccmA;B;C;D;E;F;G and H. The posttranslational pathway
           includes the transport of heme moiety, the secretion of
           the apoprotein and the covalent attachment of the heme
           with the apoprotein. The proteins ccmA and B represent
           an ABC transporter; ccmC and D participate in heme
           transfer to ccmE, which function as a periplasmic heme
           chaperone. The presence of ccmF, G and H is suggested to
           be obligatory for the final functional assembly of
           cytochrome c.
          Length = 198

 Score = 91.7 bits (228), Expect = 3e-19
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI----KD 83
           G  ++ + ++F +++GE + + G +G GK+TLLRI+AGL+ P SG+V + G  +     +
Sbjct: 11  GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70

Query: 84  PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
           P ++I  +     L P L+ LEN  L   A      +R      A+  +GL GFE     
Sbjct: 71  PHRNILYLGHLPGLKPELSALEN--LHFWAAIHGGAQR--TIEDALAAVGLTGFEDLPAA 126

Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
           ++S G  +R+  AR ++    L ++DEP +ALD 
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160


>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 91.6 bits (227), Expect = 3e-19
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 27/228 (11%)

Query: 13  EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS 70
           E + I  S  +    G    L  ++ + +  EI  L+G SG GKST LR +  +  + P 
Sbjct: 1   EAKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60

Query: 71  ---SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE 119
              +G V  +G+ I  P        K + +VFQ    FP+ ++ ENV  GL+  G+ DK 
Sbjct: 61  VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYGLRLAGVKDKA 119

Query: 120 ------ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
                 E   +  +  D +     ESA    +SGG  QRV  AR   V P ++L+DEP S
Sbjct: 120 VLDEAVETSLKQAAIWDEVKDHLHESA--LSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177

Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
           ALD +++  +   L++L  +      ++++VTH++ +A  + D+   F
Sbjct: 178 ALDPISSTQIENMLLELRDQ-----YTIILVTHSMHQASRISDKTAFF 220


>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
           transporter, peptidase/ATP-binding protein.  This
           protein describes an multidomain ABC transporter subunit
           that is one of three protein families associated with
           some regularity with a distinctive family of putative
           bacteriocins. It includes a bacteriocin-processing
           peptidase domain at the N-terminus. Model TIGR03793
           describes a conserved propeptide region for this
           bacteriocin family, unusual because it shows obvious
           homology a region of the enzyme nitrile hydratase up to
           the classic Gly-Gly cleavage motif. This family is
           therefore predicted to be a subunit of a bacteriocin
           processing and export system characteristic to this
           system that we designate NHPM, Nitrile Hydratase
           Propeptide Microcin.
          Length = 710

 Score = 91.5 bits (228), Expect = 3e-19
 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 29/174 (16%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI--- 88
           +++  +  +  G+ V L+G SGSGKST+ +++AGL  P SG++LF G   ++ P+++   
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553

Query: 89  --SVVFQTFALFPWLTVLENVELGLKAKGIDK---EERRKRAL--SAI-DLIGL--DGFE 138
             ++V Q   LF   TV +N+ L       D    +    RA   +AI D+I     G++
Sbjct: 554 SVAMVDQDIFLFEG-TVRDNLTL------WDPTIPDADLVRACKDAAIHDVITSRPGGYD 606

Query: 139 SAHTTE----ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA----ENLR 184
            A   E    +SGG  QR+  ARA V  PS+L++DE  SALD  T     +NLR
Sbjct: 607 -AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659


>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 257

 Score = 91.6 bits (227), Expect = 4e-19
 Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 33/238 (13%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS------PSSGQVLFKGKKIKDPP 85
           +L  +   + +  I G++G SGSGKSTLL+++  L+          G+VL+ GK I    
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 86  -----KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL----- 134
                K++ +VFQ    FP L++ +N+   LK+ GI +K E +K     +  +GL     
Sbjct: 85  AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144

Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
           D   S   +++SGG  QR+  ARA  + P +LLMDEP S +D++ ++ +   + +L  E 
Sbjct: 145 DRLNSP-ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE- 202

Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE-----EVLISIPHPRNRLSPEF 247
                ++++V+HN ++   + D V  F  N G + E     E+  S   P+N L+ ++
Sbjct: 203 ----IAIVIVSHNPQQVARVADYV-AFLYN-GELVEWGSSNEIFTS---PKNELTEKY 251


>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
            This protein is related to a Proteobacterial ATP
           transporter that exports lipid A and to eukaryotic
           P-glycoproteins.
          Length = 576

 Score = 91.7 bits (228), Expect = 4e-19
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 19/213 (8%)

Query: 29  NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKD 87
           +   LD +N  V  GE V L+G SG+GKSTL +++     P SG++L  G  ++   P +
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411

Query: 88  ----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFE 138
               +++V Q   LF   +V+EN+  G      ++ E   RA  A + I     G D + 
Sbjct: 412 LRARMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYL 470

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
                 +SGG  QR+  ARA +    +LL+DE  SALD  + + ++  L  L ++GR   
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGR--- 526

Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
            + L++ H +   VL  DR++V     GRI  +
Sbjct: 527 -TTLIIAHRL-ATVLKADRIVVMDQ--GRIVAQ 555


>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 204

 Score = 91.4 bits (228), Expect = 4e-19
 Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 15/155 (9%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
           ++   ++F +++GE+V + G +G+GK++LLRI+AGL  P +G+VL++G+ I+    +   
Sbjct: 15  ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE--- 71

Query: 91  VFQTFALF--------PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
            +    L+          LT LEN+    +  G   +E    AL+    +GL GFE    
Sbjct: 72  -YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---VGLAGFEDVPV 127

Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
            ++S G  +RV  AR ++    L ++DEPF+A+D 
Sbjct: 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score = 91.3 bits (227), Expect = 5e-19
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 23/212 (10%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK--IKDPP---K 86
           VL  +N ++  GE +G++G SGSGKSTL +++  L +P  GQVL  G    I DP    +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531

Query: 87  DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA--LSAIDLI-----GLDGFES 139
            + VV Q   LF   ++ +N+ L     G   E     A    A D I     G +    
Sbjct: 532 QMGVVLQENVLFSR-SIRDNIALC--NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588

Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
                +SGG  QR+  ARA V  P +L+ DE  SALD  +   +  ++ ++   GR    
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGR---- 643

Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           +++++ H +   V  CDR++V     G+IAE 
Sbjct: 644 TVIIIAHRL-STVRACDRIIVLEK--GQIAES 672


>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 90.8 bits (225), Expect = 6e-19
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 29/240 (12%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--PS---SGQVLFKGKKIK 82
           G    +  V   +   +I  ++G SG GK+TLLR I  +    P     G++ FKG+ I 
Sbjct: 14  GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73

Query: 83  DPPKDISV-------VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI------ 129
           DP  D++        VFQ    FP +++ +NV  G +  G+  + +  R +         
Sbjct: 74  DPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132

Query: 130 -DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
            D +  +  +    T +SGG  QR+  ARA  V P ++L+DEP SALD +      T  I
Sbjct: 133 WDEVKSELNKPG--TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA-----TQRI 185

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRV-LVFSSNPGRIAEEVLISIPHPRNRLSPEF 247
           +  +E      ++++VTHNI +A+ + D +  ++            I +  P+N+L+ E+
Sbjct: 186 EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI-VERPKNKLTEEY 244


>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 290

 Score = 90.8 bits (226), Expect = 7e-19
 Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 26/202 (12%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86
           VN ++ SG  V ++G +GSGKSTLL+ + GL+ P+SG V           K KK+K   K
Sbjct: 26  VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85

Query: 87  DISVVFQTFA---LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
            + +VFQ F    LF   TV +++  G    G+ +E+ +++A   I+L+GL     A + 
Sbjct: 86  KVGIVFQ-FPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP 143

Query: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI----EGRLPI 198
            E+SGG ++RV  A    + P +L++DEP + LD       R ++++++     E  L  
Sbjct: 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD----PKGRKEMMEMFYKLHKEKGLTT 199

Query: 199 ESMLMVTHNIEEAVLMCDRVLV 220
              ++VTH++E+A    D+++V
Sbjct: 200 ---VLVTHSMEDAARYADQIVV 218


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes.
          Length = 571

 Score = 90.5 bits (225), Expect = 8e-19
 Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 28/214 (13%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
            LD ++  +  GE V L+GRSGSGKSTL+ +I     P SGQ+L  G  + D        
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406

Query: 88  -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK--RALSAIDLI-----GLDGFES 139
            +++V Q   LF   T+  N+  G + +  D+ E  +   A  A D +     GLD    
Sbjct: 407 QVALVSQDVVLFN-DTIANNIAYG-RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464

Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
            +   +SGG  QR+  ARA +    +L++DE  SALD   +E L    ++  ++GR    
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN-ESERLVQAALERLMQGR---- 519

Query: 200 SMLMVTH---NIEEAVLMCDRVLVFSSNPGRIAE 230
           + L++ H    IE+A    DR++V     GRI E
Sbjct: 520 TTLVIAHRLSTIEKA----DRIVVMDD--GRIVE 547


>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 90.3 bits (224), Expect = 9e-19
 Identities = 73/203 (35%), Positives = 98/203 (48%), Gaps = 16/203 (7%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS--GQVLFKGKKIKDPP-KDI 88
           +L+ V    S GEI+ +LG SGSGKSTLL  +AG +  ++  G +L   +K      K  
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142

Query: 89  SVVFQTFALFPWLTVLEN---VELGLKAKGIDKEERRKRALSAIDLIGLDGFES-----A 140
             V Q   L+P LTV E      L    K + K+E+   A S I  +GL   E+     +
Sbjct: 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNS 202

Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
               ISGG  +RV  A   ++ PSLL++DEP S LD   A  L   L  L  +G+  + S
Sbjct: 203 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262

Query: 201 MLMVTHNIEEAVL-MCDRVLVFS 222
           M    H     V  M D VLV S
Sbjct: 263 M----HQPSSRVYQMFDSVLVLS 281


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
            model describes the photoreceptor protein (rim protein)
            in eukaryotes. It is the member of ABC transporter
            superfamily. Rim protein is a membrane glycoprotein which
            is localized in the photoreceptor outer segment discs.
            Mutation/s in its genetic loci is implicated in the
            recessive Stargardt's disease.
          Length = 2272

 Score = 90.1 bits (223), Expect = 9e-19
 Identities = 63/203 (31%), Positives = 110/203 (54%), Gaps = 17/203 (8%)

Query: 33   LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
            +D++N      +I   LG +G+GK+T L I+ GL+ P+SG VL  GK I+    ++  V 
Sbjct: 946  VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---TNLDAVR 1002

Query: 93   QTFA-------LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
            Q+         LF  LTV E++    + KG   EE +    + ++  GL    +    ++
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDL 1062

Query: 146  SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
            SGGM +++  A AFV    ++++DEP S +D  +  ++  DL+  +  GR    +++M T
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI-WDLLLKYRSGR----TIIMST 1117

Query: 206  HNIEEAVLMCDRVLVFSSNPGRI 228
            H+++EA L+ DR+ + S   GR+
Sbjct: 1118 HHMDEADLLGDRIAIISQ--GRL 1138



 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 14/195 (7%)

Query: 33   LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
            +D++   V  GE  GLLG +G+GK+T  +++ G  + +SG     GK I     +IS V 
Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL---TNISDVH 2011

Query: 93   QTFALFP-------WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
            Q     P        LT  E++ L  + +G+  EE  K A  +I  +GL  +        
Sbjct: 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY 2071

Query: 146  SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
            SGG  +++  A A +  P L+L+DEP + +D      L   ++ +  EGR    ++++ +
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR----AVVLTS 2127

Query: 206  HNIEEAVLMCDRVLV 220
            H++EE   +C R+ +
Sbjct: 2128 HSMEECEALCTRLAI 2142


>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
           transporter, ATP-binding protein.  Members of this
           protein family are ABC transporter ATP-binding subunits,
           part of a three-gene putative bacteriocin transport
           operon. The other subunits include another ATP-binding
           subunit (TIGR03796), which has an N-terminal propeptide
           cleavage domain, and an HlyD homolog (TIGR03794). In a
           number of genomes, a conserved propeptide sequence with
           a classic Gly-Gly motif.
          Length = 686

 Score = 89.2 bits (222), Expect = 2e-18
 Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 34/217 (15%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--- 87
           L+LD V+  +  GE V ++G SGSGKSTLLR++ G  +P SG V + G+ +         
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526

Query: 88  --ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA----- 140
             + VV Q   L    ++ EN+        +  +E    A  A  + GL     A     
Sbjct: 527 RQLGVVLQNGRLMSG-SIFENI---AGGAPLTLDE----AWEAARMAGLAEDIRAMPMGM 578

Query: 141 HT------TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
           HT        +SGG  QR+  ARA V  P +LL DE  SALD  T   +   L       
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL------E 632

Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           RL + + +++ H +   +   DR+ V   + GR+ ++
Sbjct: 633 RLKV-TRIVIAHRL-STIRNADRIYVL--DAGRVVQQ 665


>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 88.9 bits (220), Expect = 2e-18
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 25/208 (12%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-----PSSGQVLFKGKKIK 82
           GN   L  ++ +    E+  L+G SG GKST LR +  +         +G++ F+G+ I 
Sbjct: 15  GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74

Query: 83  DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE---ERRKRAL--SAI 129
                     K++ +VFQ    FP+ +V +NV  GLK  G+ DKE   +R + +L  +AI
Sbjct: 75  GSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133

Query: 130 DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189
                D  +  +    SGG  QR+  ARA  V P ++L+DEP SALD +++  +   L++
Sbjct: 134 WKETKDNLDR-NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192

Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDR 217
           L  +      + +MVTHN+++A  + D+
Sbjct: 193 LKHQ-----YTFIMVTHNLQQAGRISDQ 215


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 88.6 bits (220), Expect = 3e-18
 Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 30/219 (13%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86
           VN  +  G     +G +GSGKST+++++ GL  P+ G V           K K IK   K
Sbjct: 26  VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK 85

Query: 87  DISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESA 140
            + +VFQ    FP       TVL++V  G +  G+ +EE    A   + L+G+       
Sbjct: 86  KVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141

Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
           +  E+SGG ++RV  A    + P +L++DEP + LD       R +L+ L+ +      +
Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG----RKELMTLFKKLHQSGMT 197

Query: 201 MLMVTHNIEEAVLMCDRV-------LVFSSNPGRIAEEV 232
           +++VTH +++     D V       LV S  P  I ++V
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDV 236


>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 48/228 (21%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR------------------IIAGL--VSPSS 71
           +L  +N ++   E+   +G SG GKST LR                   I G+   S  +
Sbjct: 20  ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79

Query: 72  GQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR-----KRAL 126
             VL + K        + +VFQ    FP  ++ +NV  G K  G+ K +++     +++L
Sbjct: 80  NVVLLRAK--------VGMVFQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSL 130

Query: 127 SAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---EN 182
           +++ L   L         E+SGG  QR+  ARA  V P++LLMDEP SALD +     EN
Sbjct: 131 TSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN 190

Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           L  +L     +    I   ++VTH++++A  + DRV  F S  GRI E
Sbjct: 191 LIQEL-----KKNFTI---IVVTHSMKQAKKVSDRVAFFQS--GRIVE 228


>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
           protein LsrA; Provisional.
          Length = 510

 Score = 87.0 bits (216), Expect = 9e-18
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 20/216 (9%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL  + I + +S       + VL  ++F + +GE+  LLG +G+GKSTL++IIAG+V P 
Sbjct: 11  LLCARSISKQYS------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD 64

Query: 71  SGQVLFKGKKIK--DPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
           SG +   G       P K     I +V Q   LFP L+V EN+  GL  K     ++ K+
Sbjct: 65  SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQ 123

Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
            L+A+    LD   SA + E++    Q V   R  +    +L++DEP ++L     E L 
Sbjct: 124 LLAALG-CQLDLDSSAGSLEVADR--QIVEILRGLMRDSRILILDEPTASLTPAETERLF 180

Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
           + + +L  +G      ++ ++H + E   + DR+ V
Sbjct: 181 SRIRELLAQG----VGIVFISHKLPEIRQLADRISV 212



 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 43/211 (20%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KDPPKD---ISVV 91
           ++  V +GEI+GL G  G+G++ L   + GL     G+++  GK+I            +V
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341

Query: 92  F-----QTFALF-----PWLTV-LENVELGLKAKGIDKE----ERRKRALSAIDLIGLDG 136
           +     Q+  L+      W    L +   G   K   +E    ER +RAL+    I  + 
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKP-ARENAVLERYRRALN----IKFNH 396

Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
            E A  T +SGG  Q+V  A+     P LL++DEP   +DV    + R D+  L      
Sbjct: 397 AEQAART-LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV----SARNDIYQL------ 445

Query: 197 PIESM-------LMVTHNIEEAVLMCDRVLV 220
            I S+       L ++ ++EE   M DRVLV
Sbjct: 446 -IRSIAAQNVAVLFISSDLEEIEQMADRVLV 475


>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 86.8 bits (215), Expect = 9e-18
 Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 27/213 (12%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIK 82
           G+   L  ++      ++  L+G SG GKST LR +  +      +   G++L  G+ I 
Sbjct: 17  GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76

Query: 83  DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-------DKEERRKRALSA 128
           DP  D       + +VFQ    FP  ++ ENV  GL+  G+       ++ ER  R  + 
Sbjct: 77  DPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL 135

Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
            D +     ESA    +SGG  QR+  ARA  V P +LLMDEP SALD +  + +  +LI
Sbjct: 136 WDEVKDRLHESA--LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELI 192

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
              ++ R  I   ++VTHN+++A  + D    F
Sbjct: 193 HE-LKARYTI---IIVTHNMQQAARVSDVTAFF 221


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score = 86.3 bits (213), Expect = 1e-17
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 23/201 (11%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86
           ++  V  G    L+G +GSGKSTLL+ + GL+ P+ G+V           K K+IK   K
Sbjct: 25  IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84

Query: 87  DISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG-FESA 140
            + VVFQ    FP       TVL++V  G +  GI KE+  K A   ++++GL   F   
Sbjct: 85  KVGVVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK 140

Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
              E+SGG ++RV  A    + P +L++DEP + LD       R +++ L+       ++
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD----PKARIEMMQLFESIHQSGQT 196

Query: 201 MLMVTHNIEEAVLMCDRVLVF 221
           +++VTH +++     D V + 
Sbjct: 197 VVLVTHLMDDVADYADYVYLL 217


>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
           Provisional.
          Length = 510

 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 23/223 (10%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
            + +  I +SF      G +  L  VN  V  GEI  LLG +G+GKSTL+++++G+  P+
Sbjct: 5   YISMAGIGKSF------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58

Query: 71  SGQVLFKGKKI-KDPPKD-----ISVVFQTFALFPWLTVLENVELGL----KAKG---ID 117
            G +        K   K      I +++Q  ++   LTVLEN+ +G     K  G   ID
Sbjct: 59  KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID 118

Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
             E R RA   +  +GL          +S    Q +  A+  ++   +++MDEP S+L  
Sbjct: 119 WREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178

Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
              + L   +  L  EG     +++ ++H + E   +CDR  V
Sbjct: 179 KEVDYLFLIMNQLRKEGT----AIVYISHKLAEIRRICDRYTV 217



 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 35/221 (15%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTF 95
           ++F+V  GEI+G  G  GSG++ L+  + G+   + G++   GK I  P   +  V +  
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS-PRSPLDAVKKGM 340

Query: 96  AL----------FPWLTVLENVEL-------GLK-AKGI--DKEERR----KRALSAIDL 131
           A           FP  ++ +N+ +       G K A G+  + +E+R    +R L A+  
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400

Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191
             ++     + TE+SGG  Q+V  ++     P +++ DEP   +DV     +   +  L 
Sbjct: 401 HSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA 456

Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
            +G+     +LMV+  + E + +CDR+ VF    GR+ + +
Sbjct: 457 DDGK----VILMVSSELPEIITVCDRIAVFCE--GRLTQIL 491


>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 326

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 68/244 (27%), Positives = 129/244 (52%), Gaps = 35/244 (14%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-P---SSGQVLFKG---KKIKDPP 85
           +D+++++V  GE+VG++G SGSGKS     I GL+  P    + ++ F G   ++I +  
Sbjct: 23  VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82

Query: 86  K------DISVVFQ--TFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGLDG 136
           +      +++++FQ    +L P  TV   +   +K  +G +K+ RR+RA+  ++ +G+  
Sbjct: 83  RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142

Query: 137 FES---AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
             S    +  ++SGGM QRV  A A    P LL+ DEP +ALDV     ++  +I+L +E
Sbjct: 143 PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV----TIQAQIIELLLE 198

Query: 194 -GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRN----RL 243
             +    +++++TH++        +++V  +  G++     A ++  +  HP      R 
Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYA--GQVVETGKAHDIFRAPRHPYTQALLRA 256

Query: 244 SPEF 247
            PEF
Sbjct: 257 LPEF 260


>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 85.8 bits (212), Expect = 2e-17
 Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 27/213 (12%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLFKGKKIK 82
           G+   L  ++  +    +V  +G SG GKST LR+   +  + P++   G++   G+ I 
Sbjct: 14  GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73

Query: 83  DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL 134
           D         K++ +VFQ    FP  ++ ENV  GL+  G+ D    R+R    +    L
Sbjct: 74  DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL 132

Query: 135 -----DGF-ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
                D   ESA    +SGG  QR+  ARA  V PS+LLMDEP SALD ++   +   + 
Sbjct: 133 WDEVKDKLKESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH 190

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
           +L  +      ++++VTHN+++A  + D+   F
Sbjct: 191 ELKKD-----YTIVIVTHNMQQAARVSDKTAFF 218


>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
           protein; Provisional.
          Length = 241

 Score = 84.9 bits (210), Expect = 4e-17
 Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 11/198 (5%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP------ 85
           V++ V+  V+SGEIVGLLG +G+GK+T   ++ G+V   +G ++   + I   P      
Sbjct: 18  VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77

Query: 86  KDISVVFQTFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGLDGFESAHTTE 144
           + I  + Q  ++F  L+V +N+   L+    +  E+R  RA   ++   ++    +    
Sbjct: 78  RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137

Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
           +SGG  +RV  ARA    P  +L+DEPF+ +D ++  +++  +  L   G      +L+ 
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL----GVLIT 193

Query: 205 THNIEEAVLMCDRVLVFS 222
            HN+ E + +C+R  + S
Sbjct: 194 DHNVRETLAVCERAYIVS 211


>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
           transporter, PrtD family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 544

 Score = 84.7 bits (210), Expect = 4e-17
 Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 39/229 (17%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP 85
           G    L  ++F + +GE + ++G SGSGKSTL R+I G+  P+SG V   G  +K  D  
Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388

Query: 86  ---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK-----RALSAIDLIGLDGF 137
              K I  + Q   LFP  TV EN+     A+  +  +  K     +     +LI     
Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENI-----ARFGENADPEKIIEAAKLAGVHELIL--RL 440

Query: 138 ESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
              + T I       SGG  QR+  ARA    P L+++DEP S LD    + L   +  L
Sbjct: 441 PDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500

Query: 191 WIEGRLPIESMLMVTHNIEEAVLMC-DRVLVFSSNPGRIA-----EEVL 233
              G     +++++TH    ++L C D++LV     GRIA     +EVL
Sbjct: 501 KARGI----TVVVITHRP--SLLGCVDKILVL--QDGRIARFGERDEVL 541


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 84.6 bits (210), Expect = 4e-17
 Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 19/177 (10%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LLE+++I ++F      G +  LD V+  V +GEIV L G +G+GKSTL+++++G V P 
Sbjct: 5   LLEMKNITKTF------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPH 57

Query: 71  ---SGQVLFKGKK-----IKDPP-KDISVVFQTFALFPWLTVLENVELG---LKAKGIDK 118
               G+++F+G++     I+D     I+++ Q  AL   L+VLEN+ LG        +D 
Sbjct: 58  GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDY 117

Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
           +    RA   +  + LD   +     +  G  Q V  A+A      LL++DEP ++L
Sbjct: 118 DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174



 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 36/220 (16%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP--SSGQVLFKGKKIK-DPPKD- 87
            +D V+F++  GEI+G+ G  G+G++ L++ + G   P    G++   GK +K   P+  
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQA 335

Query: 88  ----ISVV---FQTFALFPWLTVLENVELGL-----KAKGIDKEERRKRALSAIDLIGLD 135
               I++V    +   + P + V +N+ L           ID     K  L +I  + + 
Sbjct: 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV- 394

Query: 136 GFESAH----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE--NLRTDLI 188
             ++A        +SGG  Q+   A+  ++ P +L++DEP   +DV    E   L   L+
Sbjct: 395 --KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
              +       ++++++  + E + + DRVLV     G++
Sbjct: 453 QQGV-------AIIVISSELPEVLGLSDRVLVMHE--GKL 483


>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 29/236 (12%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV---- 67
           +EI+D+  SF      G + VLD VN  +    I  L+G SGSGKSTLLR+   L+    
Sbjct: 4   IEIRDLKVSF------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57

Query: 68  -SPSSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDK--- 118
            +  SG+V   G+ I         + + +VFQ     P L++ ENV LGLK   + K   
Sbjct: 58  EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117

Query: 119 --EERRKRALSAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
             +ER + AL    L   +     A   ++SGG  QR+  ARA    P +LL DEP + L
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177

Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           D      + +  ++L  +      ++++VTH  ++A  + D V       G+I E 
Sbjct: 178 DPENTAKIESLFLELKKD-----MTIVLVTHFPQQAARISDYVAFLYK--GQIVEW 226


>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
          Length = 251

 Score = 84.0 bits (208), Expect = 6e-17
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 27/206 (13%)

Query: 22  SLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
           SL+ +S   G   VL  V+  +  G+I+ LLG +G+GKSTL+R++ GLV+P  G +    
Sbjct: 6   SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---- 61

Query: 79  KKIKDPPKDISVVFQTFALFPW--LTVLENVEL--GLKAKGIDKEERRKRALSAIDLIGL 134
              ++    I  V Q   L     LTV   + L  G K + I    +R +A   ID    
Sbjct: 62  --KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID---- 115

Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
                A   ++SGG  QRV  ARA +  P LL++DEP   +DV    N +  L DL  + 
Sbjct: 116 -----APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV----NGQVALYDLIDQL 166

Query: 195 RLPIE-SMLMVTHNIEEAVLMCDRVL 219
           R  ++ ++LMV+H++   +   D VL
Sbjct: 167 RRELDCAVLMVSHDLHLVMAKTDEVL 192


>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 255

 Score = 84.3 bits (209), Expect = 6e-17
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 36/234 (15%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL +  +   F      G LL ++ VN  V   EIV L+G +G+GK+T+   + G   P+
Sbjct: 5   LLSVSGLMMRF------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT 58

Query: 71  SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLEN--------VELG-----L 111
            G +L +G+ I+  P        +   FQ   LF  +TV+EN        ++ G     L
Sbjct: 59  GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLL 118

Query: 112 KAKGIDKEERRK--RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMD 169
           K     + E     RA + ++ +GL    +     ++ G  +R+  AR  V  P +L++D
Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178

Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIE---SMLMVTHNIEEAVLMCDRVLV 220
           EP + L+    + L  +LI       L  E   ++L++ H+++  + + DR+ V
Sbjct: 179 EPAAGLNPKETKELD-ELIA-----ELRNEHNVTVLLIEHDMKLVMGISDRIYV 226


>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 282

 Score = 84.1 bits (208), Expect = 7e-17
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ--------VLFKGKKIKD 83
            L+ ++F++  G    L+G +GSGKST+ ++I GL+ P            +    K + D
Sbjct: 22  ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81

Query: 84  PPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
             + + +VFQ     F   TV ++V  GL+ + + + E  K     +  +G+  +  +  
Sbjct: 82  IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP 141

Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202
             +SGG  QRV  A    V P ++++DE  S LD    E +   +  L  +  L + S  
Sbjct: 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS-- 199

Query: 203 MVTHNIEEAVLMCDRVLVFSSNPGRI 228
            +TH+I+EA  M D+VLV   + G++
Sbjct: 200 -ITHDIDEAN-MADQVLVL--DDGKL 221


>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 84.0 bits (208), Expect = 8e-17
 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 8   DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
            N +++ +++   +   + S   L LD VN  V  GE + +LGR+GSGKST+ + +  L+
Sbjct: 1   MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60

Query: 68  SPSSGQVLFKGKKIKDPPK--DI----SVVFQTFALFP-----WLTVLENVELGLKAKGI 116
            PS G+V   G    D     DI     +VFQ     P        V E+V  G +  GI
Sbjct: 61  IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQN----PDNQIVATIVEEDVAFGPENLGI 116

Query: 117 DKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
             EE R+R   ++  +G+  +       +SGG  QRV  A    + P  ++ DEP + LD
Sbjct: 117 PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176

Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
                 +   + +L  +  + I   +++TH +EEAV   DR++V
Sbjct: 177 PSGRREVVNTIKELNKKYGITI---ILITHYMEEAV-EADRIIV 216


>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 249

 Score = 83.7 bits (207), Expect = 9e-17
 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 30/209 (14%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKI---- 81
           L  +N  + + ++  L+G SG GKSTLLR       +I G+    +G++   G+ I    
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV--KITGKLTMDGEDIYGNI 76

Query: 82  --KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSAIDLI 132
              D    + +VFQ    FP +++ ENV  GL+A+GI DK+      ER  R  +  D +
Sbjct: 77  DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135

Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
             D  +S H   +SGG  QR+  AR   + P ++LMDEP SALD +      T  I+  +
Sbjct: 136 K-DRLKS-HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA-----THKIEELM 188

Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
           E      ++++VTH++++A  + DR   F
Sbjct: 189 EELKKNYTIVIVTHSMQQARRISDRTAFF 217


>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. 
          Length = 711

 Score = 83.6 bits (207), Expect = 9e-17
 Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 23/208 (11%)

Query: 8   DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
              L+E QD+  SFS      ++ VL  + F +  GE+V L+G SGSGKST+  ++  L 
Sbjct: 475 LEGLIEFQDV--SFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531

Query: 68  SPSSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
            P+ GQVL  G  +         + +++V Q   LF   +V EN+  GL     ++    
Sbjct: 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAA 590

Query: 123 KRALSAIDLIGLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
            +A +A D I    F + + TE+       SGG  QR+  ARA V  P +L++DE  SAL
Sbjct: 591 AKAANAHDFIM--EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648

Query: 176 DV-----LTAENLRTDLIDLWIEGRLPI 198
           D      L     R     L I  RL  
Sbjct: 649 DAECEQLLQESRSRASRTVLLIAHRLST 676


>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 83.5 bits (207), Expect = 9e-17
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 41/212 (19%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIKDPPK 86
            L  ++  +    +   +G SG GKSTLLR       LV      G++   G+ I D   
Sbjct: 40  ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99

Query: 87  DIS-------VVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG--- 136
           D++       +VFQ    FP  ++ ENV  GL+ +GI      +R L       L G   
Sbjct: 100 DVAELRRRVGMVFQRPNPFP-KSIYENVVYGLRLQGI----NNRRVLDEAVERSLRGAAL 154

Query: 137 --------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRT 185
                    E+A    +SGG  QR+  ARA  + P +LL+DEP SALD    L  E L T
Sbjct: 155 WDEVKDRLHENA--FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT 212

Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217
           +L   +        ++++VTHN+++A  + D 
Sbjct: 213 ELKSKY--------TIVIVTHNMQQAARVSDY 236


>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 83.6 bits (206), Expect = 9e-17
 Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 15/229 (6%)

Query: 9   NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
           N++LE++++   F  +K S ++  L+ V+F+++ GE V ++G++GSGKST  R+I GL  
Sbjct: 2   NKILEVENLV--FKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58

Query: 69  PSSGQVLFKGKKIK-----DPPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERR 122
              G+V   G+ +      +  + I +VFQ     F   TV ++V  G++ +GI +EE  
Sbjct: 59  EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMI 118

Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
           KR   A+  + +  F++     +SGG  QRV  A    + P ++++DE  S LD    + 
Sbjct: 119 KRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178

Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           +   + ++  + +L   ++L +TH+++EA    DR+LV  +  G I +E
Sbjct: 179 IMRVIHEIKEKYQL---TVLSITHDLDEAA-SSDRILVMKA--GEIIKE 221


>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 27/187 (14%)

Query: 44  EIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDPP-------KDISVV 91
           +I  L+G SGSGKST LR +  +     ++  +GQ+L++G  I           K I +V
Sbjct: 47  KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMV 106

Query: 92  FQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSAIDLIGLDGFESAHTTE 144
           FQ    F   ++ EN+   L+  G+ DK+      E   +  +  D +  D  +SA T  
Sbjct: 107 FQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALT-- 163

Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
           +SGG  QR+  ARA  V P +LLMDEP SALD ++   L   + +L         ++++V
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-----YTIIIV 218

Query: 205 THNIEEA 211
           THN+++A
Sbjct: 219 THNMQQA 225


>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
           Several bacterial species have enzymes xylose isomerase
           and xylulokinase enzymes for xylose utilization. Members
           of this protein family are the ATP-binding cassette
           (ABC) subunit of the known or predicted high-affinity
           xylose ABC transporter for xylose import. These genes,
           which closely resemble other sugar transport ABC
           transporter genes, typically are encoded near xylose
           utilization enzymes and regulatory proteins. Note that
           this form of the transporter contains two copies of the
           ABC transporter domain (pfam00005).
          Length = 500

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 25/224 (11%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LLE++ I ++F      G +  LD ++  V  GE VGL G +G+GKSTL++I++G V P 
Sbjct: 1   LLEMKGIVKTF------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPH 53

Query: 71  ---SGQVLFKGKKIK------DPPKDISVVFQTFALFPWLTVLENVELG----LKAKGID 117
               G++ + G  +K           I ++ Q   L P L+V EN+ LG    L    + 
Sbjct: 54  GTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMA 113

Query: 118 KEERRKRALSAIDLIGLDGFESAHTT-EISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
                 RA + +  + LD         +  GG  Q V  A+A      LL++DEP S+L 
Sbjct: 114 YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173

Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
               E L   + DL   G     + + ++H + E   +CD + V
Sbjct: 174 EKETEILLDIIRDLKAHGV----ACVYISHKLNEVKAVCDTICV 213



 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 22/205 (10%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFKGKK--IKDPPKDI 88
           +D V+F++  GEI+G+ G  G+G++ L++ + G   P    G V   GK   I++P + I
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334

Query: 89  SVVF-------QTFALFPWLTVLENVELGL-----KAKGIDKEERRKRALSAIDLIGLDG 136
                      +   + P L V +N+ L +         ID     +   SAI  + +  
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394

Query: 137 FES-AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
                    +SGG  Q+   A+  +  P +L++DEP   +DV     +   +  L  EG 
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220
               ++++V+  + E + + DRVLV
Sbjct: 455 ----AIIVVSSELAEVLGLSDRVLV 475


>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 41/210 (19%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRI---IAGLVSPSS--GQVLFKGKKIKDPPKD 87
           L  +  ++    +  L+G SG GKSTLLR    +  L+      G +L+ G+ I D   D
Sbjct: 22  LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81

Query: 88  -------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG---- 136
                  I +VFQ    FP  ++ ENV  G +  G    E+ K+ L  I    L G    
Sbjct: 82  VVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG----EKNKKTLDTIVEKSLKGAALW 136

Query: 137 -------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--ENLRTD 186
                   +SA    +SGG  QR+  AR   V P ++LMDEP SALD + TA  E+L  D
Sbjct: 137 DEVKDRLHDSA--LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194

Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCD 216
           L   +        ++++VTHN+++A  + D
Sbjct: 195 LKKEY--------TVIIVTHNMQQAARVSD 216


>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP------K 86
           L+ +N  +  GE +G++G++GSGKSTL   + GL+ P  G+VL  G    D        K
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77

Query: 87  DISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
            + +VFQ     F   TV E++  G +   +   E RKR   A+  IGL+ +       +
Sbjct: 78  LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTL 137

Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
           SGG  Q V  A    + P  L+ DE  S LD  +   +   +  L  +G+    +++ +T
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK----TIVYIT 193

Query: 206 HNIEEAVLMCDRVLVFSSNPGRIAEE 231
           HN+EE +   DR++V     G+I  E
Sbjct: 194 HNLEE-LHDADRIIVMDR--GKIVLE 216


>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 269

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 57/253 (22%)

Query: 1   MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
             N  I  N ++ +Q++  S+      G    +  V  ++  G++  L+G SG GKST+L
Sbjct: 3   KTNKKISKNIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL 56

Query: 61  RIIA---GLVSPSS--GQVLFKGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVE 108
           R +     L+   S  G+VLF G  + DP  D       I +VFQ    FP  ++ EN+ 
Sbjct: 57  RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIA 115

Query: 109 LGLKAKGI--DKEERRKRAL--SAI-----DLIGLDGFESAHTTEISGGMLQRVGFARAF 159
            G +  G   D +E  +R+L  +A+     D +   G+       +SGG  QR+  AR  
Sbjct: 116 FGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYS------LSGGQQQRLCIARTI 169

Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM---------LMVTHNIEE 210
            + P ++LMDEP SALD ++          L IE     E+M         ++VTHN+++
Sbjct: 170 AIEPEVILMDEPCSALDPIST---------LKIE-----ETMHELKKNFTIVIVTHNMQQ 215

Query: 211 AVLMCDRVLVFSS 223
           AV + D    F++
Sbjct: 216 AVRVSDMTAFFNA 228


>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
           Provisional.
          Length = 588

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 31/214 (14%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87
           ++ V+F    G+ V ++G +G+GKSTL+ ++  +  P SG++L  G  I+        ++
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410

Query: 88  ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR--KRALSAIDLI--GLDGFESAHTT 143
           I+VVFQ   LF   ++ +N+ +G +    D+E R   +RA  A D I    DG++     
Sbjct: 411 IAVVFQDAGLFN-RSIEDNIRVG-RPDATDEEMRAAAERA-QAHDFIERKPDGYD-TVVG 466

Query: 144 E----ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
           E    +SGG  QR+  ARA +  P +L++DE  SALDV T   ++   +D  ++GR    
Sbjct: 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK-AALDELMKGR---- 521

Query: 200 SMLMVTH---NIEEAVLMCDRVLVFSSNPGRIAE 230
           +  ++ H    +  A    DR+LVF +  GR+ E
Sbjct: 522 TTFIIAHRLSTVRNA----DRILVFDN--GRVVE 549


>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 327

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 39/206 (18%)

Query: 11  LLEIQDICQSFSLKK--ISGNLLV--LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66
           LL+  D+ + + +K+       LV  LD V+F +  G+ + ++G SG GKSTL R++  +
Sbjct: 5   LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64

Query: 67  VSPSSGQVLFKGKKIKDPPK--------DISVVFQT-FA-LFPWLTV---LE-----NVE 108
            +P+ G++ ++G+ +              I +VFQ  +  L P   V   LE     N  
Sbjct: 65  ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS 124

Query: 109 LGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE----ISGGMLQRVGFARAFVVFPS 164
           L          ERR++AL+ +  +GL      H        SGG  QR+  ARA ++ P 
Sbjct: 125 L-------SAAERREKALAMMAKVGL---RPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174

Query: 165 LLLMDEPFSALDV-LTAE--NLRTDL 187
           +++ DEP SALDV + A+  NL  DL
Sbjct: 175 VVVADEPVSALDVSVQAQVLNLMMDL 200


>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
            Members of this family are the PhnK protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated complex. This protein (PhnK) and the
           adjacent-encoded PhnL resemble transporter ATP-binding
           proteins but are suggested, based on mutatgenesis
           studies, to be part of this complex rather than part of
           a transporter per se.
          Length = 253

 Score = 81.8 bits (202), Expect = 4e-16
 Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 40/250 (16%)

Query: 23  LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
           L K  G       V+F++  GE++G++G SGSGKSTLL  +AG ++P  G   +  +   
Sbjct: 9   LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS-- 66

Query: 83  DPPKDISVVFQT----FALFPWLTVLENVELGLK---AKGIDKEER----------RKRA 125
               ++  + +          W  V +N   GL+   + G +  ER            RA
Sbjct: 67  GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA 126

Query: 126 LSA-------IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
            +        ID   +D    A     SGGM QR+  AR  V  P L+ MDEP   LDV 
Sbjct: 127 AAHDWLEEVEIDPTRIDDLPRA----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182

Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE-----EVL 233
               L   L  L  +  L   ++++VTH++  A L+  R+LV     GR+ E     +VL
Sbjct: 183 VQARLLDLLRGLVRDLGL---AVIIVTHDLGVARLLAQRLLVMQQ--GRVVESGLTDQVL 237

Query: 234 ISIPHPRNRL 243
               HP  +L
Sbjct: 238 DDPQHPYTQL 247


>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 268

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 41/244 (16%)

Query: 1   MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
           +A        +LE++D+   +      G    ++ ++ ++    +  L+G SG GKST L
Sbjct: 11  IAPFPEAKEHILEVKDLSIYY------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL 64

Query: 61  RIIAGL-----VSPSSGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVE 108
           R I  +      + S G++L++G  I D         ++I +VFQ    FP  ++  N+ 
Sbjct: 65  RSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNIT 123

Query: 109 LGLKAKGIDKEERRKRALSAI-----------DLIGLDGFESAHTTEISGGMLQRVGFAR 157
             LK  G    ERRK  L  I           D +      SA    +SGG  QR+  AR
Sbjct: 124 HALKYAG----ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--LSLSGGQQQRLCIAR 177

Query: 158 AFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217
              + P++LL+DEP SALD ++   +   + +L  E      S+++VTHN+++A+ + DR
Sbjct: 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-----YSIIIVTHNMQQALRVSDR 232

Query: 218 VLVF 221
              F
Sbjct: 233 TAFF 236


>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 81.6 bits (201), Expect = 4e-16
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 28/226 (12%)

Query: 16  DICQSFSLKKI-SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLV 67
            I     L KI  GN + +   +  +   EI G +G SG GKST+LR       ++ G  
Sbjct: 6   PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGF- 64

Query: 68  SPSSGQVLFKGKKIK----DP---PKDISVVFQTFALFPWLTVLENVELGLKA---KGID 117
               G V F G+ +     DP    + I +VFQ    F  +++ +NV  GL+    KG D
Sbjct: 65  -RFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKG-D 121

Query: 118 KEERRKRALSAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
             +R K AL    L   +          +SGG  QR+  ARA    P +LL+DEP SALD
Sbjct: 122 LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181

Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
            +    +   +++L  +      ++ +VTHN+++A+ + D    FS
Sbjct: 182 PIATRRVEELMVELKKD-----YTIALVTHNMQQAIRVADTTAFFS 222


>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 81.6 bits (201), Expect = 4e-16
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 28/239 (11%)

Query: 15  QDICQSFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRI---IAGLVS 68
           Q +  +  +K +S        ++ ++ ++   ++  ++G SG GKST ++    I+ L  
Sbjct: 2   QQLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEG 61

Query: 69  PS--SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKG---- 115
           P    G V F G+ I DP        + I +VFQ    FP +++ ENV  G++       
Sbjct: 62  PVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQ 120

Query: 116 IDKEERRKRALSAIDLIG--LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
            D +E  + AL    L     D    +    +SGG  QR+  ARA  + P +LLMDEP S
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKS-ALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179

Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
           ALD +    +   +  L  E  + I     VTHN+++A  + D    FS++  RI + V
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAI-----VTHNMQQATRVSDFTAFFSTDESRIGQMV 233


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 81.3 bits (201), Expect = 4e-16
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 30/233 (12%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           + I D+  S+          +L  ++  +       ++G SGSGKSTL +++ G     S
Sbjct: 474 IVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528

Query: 72  GQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126
           G++L  G  +KD  +      I+ + Q   +F   ++LEN+ LG K      ++    A 
Sbjct: 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENV--SQDEIWAAC 585

Query: 127 SAIDL--------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
              ++        +G     S   + ISGG  QR+  ARA +    +L++DE  S LD +
Sbjct: 586 EIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645

Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           T + +  +L++      L  ++++ V H +  A    D+++V     G+I E+
Sbjct: 646 TEKKIVNNLLN------LQDKTIIFVAHRLSVAK-QSDKIIVLDH--GKIIEQ 689


>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 81.2 bits (200), Expect = 5e-16
 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 31/201 (15%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPP- 85
           +L  VN ++    +  L+G SG GKST +R +  +  + P     G +   G  I DP  
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77

Query: 86  ------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKE----ERRKRALSAIDLIG-- 133
                 K + +VFQ    FP  ++ +NV  GL+  G D E    ER + +L A  L    
Sbjct: 78  DVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV 136

Query: 134 ---LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
              LD  +SA    +SGG  QR+  AR   V P ++LMDEP SALD ++   +  DLI  
Sbjct: 137 KDKLD--KSA--LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE-DLIHK 191

Query: 191 WIEGRLPIESMLMVTHNIEEA 211
             E      ++++VTHN+++A
Sbjct: 192 LKEDY----TIVIVTHNMQQA 208


>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
           protein UrtD.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 242

 Score = 80.7 bits (200), Expect = 7e-16
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           +L ++ +  SF           L+ ++  V  GE+  ++G +G+GK+T++ +I G   P 
Sbjct: 2   ILYLEGLSVSF------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55

Query: 71  SGQVLFKGKKI-KDPPKDISVV-----FQTFALFPWLTVLENVELGLKAK---------G 115
            G VLF G  +   P   I+       FQ   +F  LTV EN+EL L             
Sbjct: 56  EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115

Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171
           +  EE+  R    ++ IGL          +S G  Q +      +  P LLL+DEP
Sbjct: 116 LSAEEKD-RIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170


>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 260

 Score = 80.1 bits (198), Expect = 9e-16
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 39/216 (18%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--P---SSGQVLFKGKKIK 82
           G    L  +N +++  ++   +G SG GKSTLLR    +    P   + G++L  G+ I 
Sbjct: 24  GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83

Query: 83  DPPKDISV-------VFQTFALFPWLTVLENVELGLK-----AKGIDKEERRKRALSAID 130
            P +DI++       VFQ    FP +++ +N+  G++     ++  + +ER + AL+   
Sbjct: 84  TPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRA-EMDERVEWALTKAA 141

Query: 131 LIGLDGFE-----SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--EN 182
           L      E           +SGG  QR+  AR   + P +LL+DEP SALD + T   E 
Sbjct: 142 LWN----EVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197

Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
           L T+L   +        ++++VTHN+++A    D  
Sbjct: 198 LITELKQDY--------TVVIVTHNMQQAARCSDYT 225


>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 320

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 30/241 (12%)

Query: 6   IKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
           + D+ +L ++++   F  +K    L+ L+ +++     +I  ++G SGSGKSTL+    G
Sbjct: 16  LSDDIILRVKNLYCVFD-EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74

Query: 66  LVSPSSGQVLFKG------------------KKIKDPP---KDISVVFQ--TFALFPWLT 102
           L+    G +                      KKIK+     + +S+VFQ   + LF   T
Sbjct: 75  LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DT 133

Query: 103 VLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVV 161
           + +++  G  A G+ K E +K A   ++ +GLD  +       +SGG  +RV  A    +
Sbjct: 134 IEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193

Query: 162 FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
            P +L+ DEP + LD    E+    LI   ++ +   +++ ++TH +E  + + D V+V 
Sbjct: 194 QPEILIFDEPTAGLDP-KGEHEMMQLI---LDAKANNKTVFVITHTMEHVLEVADEVIVM 249

Query: 222 S 222
            
Sbjct: 250 D 250


>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 276

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 24/216 (11%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG-----------QVLFKGKK 80
           VLD+V+    +  +  L+G +GSGK+T LR +  +    SG           + +F  + 
Sbjct: 36  VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95

Query: 81  IKDPPKDISVVFQTFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGL-DGFE 138
           + +  + + ++FQ    FP +++++NV  G++A K + ++E R  A + +  +GL D  +
Sbjct: 96  VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154

Query: 139 ---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
              S     +SGG  Q +  AR   V P +LL+DEP SALD  T E      I+ +I   
Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK-----IEEFIRSL 209

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
               ++++VTHN+ +A  + DR  +F    GR+ EE
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFD--GRLVEE 243


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 31/210 (14%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDPPKD 87
           L+ +N  +   +I  L+G SG GKST LR +  +          G+VL  GK I D  KD
Sbjct: 20  LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD--KD 77

Query: 88  ISV---------VFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAI------DL 131
           + V         VFQ    FP +++ +NV  G +  GI DK+E  K    A+      D 
Sbjct: 78  VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE 136

Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191
           +  D  +SA   ++SGG  QR+  AR   V P ++LMDEP SALD ++   +   +++L 
Sbjct: 137 VKDDLKKSA--LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194

Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
            E      ++++VTHN+++A  + D    F
Sbjct: 195 KE-----YTIVIVTHNMQQASRVSDYTAFF 219


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 79.3 bits (195), Expect = 2e-15
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPPKD--- 87
           V+ +     +  ++G SG GKST+LR I  +  + PS   +G++L     I D   D   
Sbjct: 23  VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82

Query: 88  ----ISVVFQTFALFPWLTVLENVELGLKAKG-IDKEERRKRALSAIDLIGL-----DGF 137
               + +VFQ    FP +++ +NV  G K  G +++ E  +   S++  + L     D  
Sbjct: 83  IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142

Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
           +S +  E+SGG  QR+  AR   V P ++LMDEP SALD ++     T  I+  IE    
Sbjct: 143 KS-NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS-----TLKIEELIEELKE 196

Query: 198 IESMLMVTHNIEEAVLMCDRVLVF 221
             ++++VTHN+++A  + D    F
Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFF 220


>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 264

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 39/222 (17%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82
           G+ L +  V  ++   +I   +G SG GKST+LR    L  + P     G+V F GK + 
Sbjct: 21  GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80

Query: 83  DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAI---- 129
            P  D       I +VFQ    FP  ++ +N+  G +  G   D +E  +R+L       
Sbjct: 81  APDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWD 139

Query: 130 ---DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENL 183
              D +   G        +SGG  QR+  ARA  V P ++LMDEP SALD    L  E L
Sbjct: 140 EVKDKLKQSGLS------LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193

Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNP 225
             +L + +        ++++VTHN+++A  + D    F+   
Sbjct: 194 MHELKEQY--------TIIIVTHNMQQAARVSDMTAFFNVEL 227


>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
           Provisional.
          Length = 549

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
           L+ ++F V  GEIVG++G +GSGKSTL  +IAG+  P+ G V  KG          +++ 
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA--------ALIA 91

Query: 93  QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152
            +  L   LT +EN+EL     G+ KE+ ++     I+   +  F        S GM  R
Sbjct: 92  ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSR 151

Query: 153 VGFARAFVVFPSLLLMDEPFSALD 176
           +GFA +  + P +L++DE  S  D
Sbjct: 152 LGFAISVHINPDILVIDEALSVGD 175


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 26/239 (10%)

Query: 11  LLEIQDICQSFSLK-----KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
           +L+++++   F L+     +++  +  ++KV+F++  GE + L+G SGSGKST  R +  
Sbjct: 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372

Query: 66  LVSPSSGQVLFKGKKIKDPP--------KDISVVFQT--FALFPWLTVLENVELGLKAKG 115
           LV    G+++F G++I            +DI  +FQ    +L P  TV +++   L+  G
Sbjct: 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG 432

Query: 116 I-DKEERRKRALSAIDLIGLDGFESA--HTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
           +   +    R    ++ +GL   E A  +  E SGG  QR+  ARA  + P +++ DE  
Sbjct: 433 LLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491

Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           SALDV    ++R  +I+L ++ +     + L ++H++     +  RV V     G+I E
Sbjct: 492 SALDV----SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM--YLGQIVE 544



 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 42/217 (19%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKS----TLLRII---AGLVSPSSGQVLF--KGKKIKDPPK 86
           ++F++  GE + ++G SGSGKS     L+R++    GLV     ++L   + +++ +  +
Sbjct: 35  LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ--CDKMLLRRRSRQVIELSE 92

Query: 87  ------------DISVVFQ--TFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDL 131
                       D++++FQ    +L P  TV E +   ++  +G  +EE    A   +D 
Sbjct: 93  QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQ 152

Query: 132 IGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDL 187
           + +   +   S +  ++SGGM QRV  A A    P++L+ DEP +ALDV + A+ L+  L
Sbjct: 153 VRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--L 210

Query: 188 IDLWIEGRLPIESMLM----VTHNIEEAVLMCDRVLV 220
           I      ++  + M M    +TH++     + DRVLV
Sbjct: 211 I------KVLQKEMSMGVIFITHDMGVVAEIADRVLV 241


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 78.9 bits (194), Expect = 3e-15
 Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKK 80
           G  L L  V+  + + +I+  +G SG GKSTLLR       +I G  +   G++L++ + 
Sbjct: 31  GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG--AKVEGRLLYRDRN 88

Query: 81  IKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKG----IDK--EERRKRALS 127
           I D         + + +VFQ    FP  ++ EN+    +A G    +D+  E+  +RA  
Sbjct: 89  IYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRA-- 145

Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
           AI     D  +    T +SGG  QR+  ARA  + P +LLMDEP SALD ++   +    
Sbjct: 146 AIWEEVKDKLK-EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC 204

Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
           ++L  +      +++MVTHN+++A  + D    F++
Sbjct: 205 LELKEQ-----YTIIMVTHNMQQASRVADWTAFFNT 235


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 78.5 bits (193), Expect = 3e-15
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS-----GQVLFKGKKIKDPP- 85
           +L+ V+  +   ++  ++G SG GKST L+ +  +    S     G+V F  + I +   
Sbjct: 22  ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81

Query: 86  ------KDISVVFQTFALFPWLTVLENVELGLKAKG----IDKEERRKRALSAIDL---I 132
                 + +S+V     LFP ++V +NV  G+K  G    ++ ++  + AL   DL   I
Sbjct: 82  NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140

Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
                +SA   ++SGG  QR+  ARA  V P +LLMDEP   LD + +  + + +  L +
Sbjct: 141 KHKIHKSA--LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198

Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
              L   +M++V+HN+ +   + D    F  N  RI + V
Sbjct: 199 RSEL---TMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235


>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 271

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 37/213 (17%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--PS---SGQVLFKGKKIKDPP-- 85
           L  +N ++   E+  ++G SG GKST ++ +  +V   PS   +G++L++ + I D    
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 86  -----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF--- 137
                 ++ +VFQ    FP  ++ +NV  G K  GI    + K+ L  I    L G    
Sbjct: 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI----KDKKTLDEIVEKSLRGAAIW 154

Query: 138 ----ESAHTTE--ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRTDLI 188
               +  H     +SGG  QR+  AR   + P ++LMDEP SALD    L  E L  +L 
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
             +        S+++VTHN+++A  + D+   F
Sbjct: 215 KDY--------SIIIVTHNMQQAARISDKTAFF 239


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 78.3 bits (193), Expect = 4e-15
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 23/209 (11%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV-----SPSSGQVLFKGKKIK 82
           G+  V+  V+  +    +  L+G SG GKSTLLR    L+     +   G+V   G+ I 
Sbjct: 15  GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74

Query: 83  DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDK-----EERRKRALSAID 130
            P        +++ +VFQ    FP LT+ +NV +G+K  G+ K     +ER + AL    
Sbjct: 75  SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA 134

Query: 131 LIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189
           L   +    + + + +SGG  QR+  ARA  + P +LLMDEP + +D +    +   L +
Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194

Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
           L  E      ++++VTH+  +A  + D V
Sbjct: 195 LKKE-----YTIVLVTHSPAQAARVSDYV 218


>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 246

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 20/219 (9%)

Query: 17  ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL---VSPSSGQ 73
           I ++ +L    G    L  +N  +   +I  L+G SG GKST LR    +   ++   G 
Sbjct: 2   IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61

Query: 74  VLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
           V  +GK +K+       K++ +VFQ   +F   ++ EN+    K  G+ K +  + AL  
Sbjct: 62  VEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVV 120

Query: 129 IDLIGLDGFESA------HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
             L  +  FE        +   +SGG  QR+  ARA  + P LLL+DEP SALD ++   
Sbjct: 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS--- 177

Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
             + +I+  ++      SM+MVTHN+++   + D    F
Sbjct: 178 --SGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFF 214


>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 289

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 35/267 (13%)

Query: 24  KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------- 76
           KK       L+  +      ++  ++G +GSGKST++++  GL+   +GQ +        
Sbjct: 18  KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPA 77

Query: 77  ---KGKKIKDPPKDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131
              K K++K   K+I +VFQ   + LF   T+ +++  G    G +K+E  K+    + L
Sbjct: 78  NLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKL 136

Query: 132 IGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
           + L + +      E+SGG  +RV  A    +  + L++DEP   LD    E    D I+L
Sbjct: 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEE----DFINL 192

Query: 191 WIEGRLPIE---SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLS-PE 246
           +   RL  E    ++MVTHN+++ + + D V+V       + E  +ISI  P    S  E
Sbjct: 193 FE--RLNKEYKKRIIMVTHNMDQVLRIADEVIV-------MHEGKVISIGSPFEIFSNQE 243

Query: 247 FRQIVE----KIYALMTKKEEKRLNPL 269
               +E    K+Y LM K + K ++ L
Sbjct: 244 LLTKIEIDPPKLYQLMYKLKNKGIDLL 270


>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 14/193 (7%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--ISV 90
           L   +F V  G I  L+G +GSGKSTL + + G V  +SG++   G+  +   +   ++ 
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82

Query: 91  VFQTFAL---FPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
           V Q+  +   FP L V + V +G    +      K+  R+   +A+  + +  F      
Sbjct: 83  VPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG 141

Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
           E+SGG  +RV  ARA      ++L+DEPF+ +DV T   + + L +L  EG+    +ML+
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK----TMLV 197

Query: 204 VTHNIEEAVLMCD 216
            THN+      CD
Sbjct: 198 STHNLGSVTEFCD 210


>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
           Provisional.
          Length = 501

 Score = 77.7 bits (192), Expect = 6e-15
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 24/223 (10%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL+++ I ++F   K       L     NV  G ++ L+G +G+GKST+++++ G+ +  
Sbjct: 4   LLQLKGIDKAFPGVK------ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD 57

Query: 71  SGQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAK----GIDKEE 120
           +G +L+ GK++  + PK      I ++ Q   L P LT+ EN+ LG +       ID ++
Sbjct: 58  AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKK 117

Query: 121 RRKRALSAIDLIGLDGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
               A   +  + L    S+     E+S G  Q V  A+       +++MDEP  AL   
Sbjct: 118 MYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175

Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
             E+L   + +L  +GR     ++ ++H ++E   +CD V VF
Sbjct: 176 ETESLFRVIRELKSQGR----GIVYISHRLKEIFEICDDVTVF 214



 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 42/225 (18%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-DPPKD---- 87
           ++ V+F +  GEI+G+ G  G+G++ L++++ G +  +SG V   G ++    P+D    
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327

Query: 88  ----ISVVFQTFALFPWLTVLENV------ELGLKAKGIDKEERRKRALSAIDL------ 131
               IS   +   L   ++V EN+              +   + ++     I L      
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387

Query: 132 -----IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
                IGL          +SGG  Q+V  AR  +  P +L++DEP   +DV  A+     
Sbjct: 388 SMEQAIGL----------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV-GAKKEIYQ 436

Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           LI+ +    L   S+++V+  + E + M DR+LV     GRI+ E
Sbjct: 437 LINQFKAEGL---SIILVSSEMPEVLGMSDRILVMHE--GRISGE 476


>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 269

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 12/207 (5%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP 85
             L  V+FN+  G+   ++G +GSGKST+ +++ G+    SG++ +  + I     +   
Sbjct: 23  FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR 82

Query: 86  KDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE 144
           K I +VFQ     F    V  +V  GL+   +  +E  +R   A+  + +          
Sbjct: 83  KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142

Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
           +SGG  QRV  A    + PS++++DE  S LD    +NL   +  +  E  + I S   +
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS---I 199

Query: 205 THNIEEAVLMCDRVLVFSSNPGRIAEE 231
           TH++ EA +  D V+V   N G + +E
Sbjct: 200 THDLSEA-MEADHVIVM--NKGTVYKE 223


>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 20/209 (9%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKD 87
           L  ++ ++  G    LLG +G+GKSTLL  + G+  P  G+V   G+++     K     
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80

Query: 88  ISVVF-----QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
           + +VF     Q F+     TV ++V  G    G+DK+E  +R   A+  + +  F     
Sbjct: 81  VGLVFQDPDDQVFS----STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136

Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202
             +S G  +RV  A    + P ++++DEP + LD    E L   L  L  +G+    +++
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK----TVI 192

Query: 203 MVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           + TH+++ A    D+V+V     GR+  E
Sbjct: 193 VATHDVDLAAEWADQVIVLKE--GRVLAE 219


>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 237

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 18/221 (8%)

Query: 21  FSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK 77
            S  K+S   G +  L +V+ +++ GEIV L+G +G+GK+TLL  + G    +SG+++F 
Sbjct: 6   LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65

Query: 78  GKKIKDPP------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131
           GK I D        + +++V +   +F  +TV EN+ +G      ++++ ++R     +L
Sbjct: 66  GKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG--GFFAERDQFQERIKWVYEL 123

Query: 132 IG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
              L          +SGG  Q +   RA +  P LLL+DEP   L  +  + +   +  L
Sbjct: 124 FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183

Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
             +G     ++ +V  N  +A+ + DR  V  +  G +  E
Sbjct: 184 REQGM----TIFLVEQNANQALKLADRGYVLEN--GHVVLE 218


>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 36/213 (16%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKIKDPP 85
           L  V+ ++    +   +G SG GKST LR        I G     +G++   G+ I DP 
Sbjct: 35  LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG--CRVTGKITLDGEDIYDPR 92

Query: 86  KD-------ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAIDLIGL-- 134
            D       + +VFQ    FP  ++ ENV  G +  G+   K E  +   +++   GL  
Sbjct: 93  LDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWE 151

Query: 135 ---DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--ENLRTDLI 188
              D      T  +SGG  QR+  ARA  V P ++LMDEP SALD + TA  E L  +L 
Sbjct: 152 EVKDRLHEPGTG-LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR 210

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
             +        ++++VTH++++A  +  R   F
Sbjct: 211 QNY--------TIVIVTHSMQQAARVSQRTAFF 235


>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 254

 Score = 76.2 bits (187), Expect = 1e-14
 Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 31/219 (14%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKIKDPP 85
           L+ +N  +    I  L+G SG GKST LR       ++ G+     G V+++GK I    
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGI--KIEGNVIYEGKNIYSNN 80

Query: 86  KD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG----- 133
            D       I +VFQT   F  +++ +N+  G K  G  K++++   +    L       
Sbjct: 81  FDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGT-KDKKKLDEIVEQSLKKSALWN 138

Query: 134 -LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
            +    + +   +SGG  QR+  AR   + P+++LMDEP SALD ++   +   +I+L  
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-- 196

Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
                  ++++VTHN+++A  + DR   F +  G I EE
Sbjct: 197 ---KESYTIIIVTHNMQQAGRISDRTAFFLN--GCIEEE 230


>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
           subunit; Provisional.
          Length = 264

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
           LD ++     G+++GL+G +GSGKSTL  II G +SP+ G+V   G        ++SV+ 
Sbjct: 40  LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--------EVSVIA 91

Query: 93  QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152
            +  L   LT +EN+E  +   G  ++E +      I+   L  F      + S GM  +
Sbjct: 92  ISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151

Query: 153 VGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAV 212
           +GF+    V P +L++DE  S  D    +      +D   E +   +++  V+HN+ +  
Sbjct: 152 LGFSINITVNPDILVIDEALSVGD----QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207

Query: 213 LMCDRV 218
             C ++
Sbjct: 208 QFCTKI 213


>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
           ATP-binding protein; Provisional.
          Length = 491

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 19/214 (8%)

Query: 16  DICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
           +I +SF   K       LD VN  V    I  L+G +G+GKSTLL+ + G+    SG +L
Sbjct: 3   NISKSFPGVK------ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL 56

Query: 76  FKGKKI-----KDPPKD-ISVVFQTFALFPWLTVLENVELG---LKAKGIDKEERRKRAL 126
           F+GK+I     K+  ++ IS+V Q   L    +V++N+ LG    K   +D+++  +   
Sbjct: 57  FQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK 116

Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
           +  D + +D    A    +S   +Q +  A+AF     +++MDEP S+L      +L T 
Sbjct: 117 AIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176

Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
           +  L   G      ++ ++H +EE   +CD + +
Sbjct: 177 IRKLKERGC----GIVYISHKMEEIFQLCDEITI 206



 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 32/218 (14%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPPKDISVVFQ 93
           V+F++  GEI+G+ G  G+ ++ ++  + G+   S+G +   GKKI   +  + I+    
Sbjct: 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN---H 323

Query: 94  TFAL----------FPWLTV-----LENVELGLKAKGIDKEERRKRALS-AIDLIGLDGF 137
            FAL          + +L +     + N+       G+    R K      ID + +   
Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK-- 381

Query: 138 ESAHTTEI---SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
              H T+I   SGG  Q+V   R  +  P +L++DEP   +DV     +   + +L  + 
Sbjct: 382 TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD 441

Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
           +     +++++  + E + + DR+LV S+  G +A  V
Sbjct: 442 K----GIIIISSEMPELLGITDRILVMSN--GLVAGIV 473


>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 265

 Score = 75.4 bits (185), Expect = 3e-14
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 25/208 (12%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLF--KGKK 80
           G    L  +N  V   ++  L+G SG GKST LR    +  + P +   G+++       
Sbjct: 27  GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86

Query: 81  IKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDK----EERRKRALSAI 129
           I  P  D       IS+VFQ    FP  ++ ENV  GL+ +G+ +    EER + AL   
Sbjct: 87  ILSPEVDPIEVRMRISMVFQKPNPFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNA 145

Query: 130 DLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
            L   +          +SGG  QR+  ARA    P +LL DEP SALD +   ++   + 
Sbjct: 146 ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205

Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCD 216
           DL  + ++ I   L+VTHN+++A  + D
Sbjct: 206 DL--KNKVTI---LIVTHNMQQAARVSD 228


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 19/207 (9%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPK 86
           G   +L+ ++ ++ +G+I  L+G +G GKSTLL+  A L++P SG V    K I     +
Sbjct: 13  GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72

Query: 87  DISVVFQTFALFPW-------LTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLD 135
            ++   +  AL P        +TV E V  G    L   G    E   R   A++   ++
Sbjct: 73  QLA---RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN 129

Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
                  T++SGG  QR   A        ++L+DEP + LD+    N + +L+ L  E  
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI----NHQVELMRLMRELN 185

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFS 222
              ++++ V H++ +A   CD ++V +
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLA 212


>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 74.6 bits (183), Expect = 5e-14
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 29/209 (13%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKI------ 81
           L  +N ++   E+  ++G SG GKST ++ +  ++        +G++ + G  I      
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 82  -KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL-DGFE 138
             +  K+I +VFQ    FP  ++ +NV  G +  G  +K++ ++    ++  + L D  +
Sbjct: 88  LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK 146

Query: 139 ---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRTDLIDLWI 192
                    +SGG  QR+  ARA    P +LLMDEP SALD       E L   L + + 
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY- 205

Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
                  ++++VTHN+++A  + D+   F
Sbjct: 206 -------TIVIVTHNMQQAARVSDQTAFF 227


>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein.  This model
           describes glucan exporter ATP binding protein in
           bacteria. It belongs to the larger ABC transporter
           superfamily with the characteristic ATP binding motif.
           The In general, this protein is in some ways implicated
           in osmoregulation and suggested to participate in the
           export of glucan from the cytoplasm to periplasm. The
           cyclic beta-1,2-glucan in the bactrerial periplasmic
           space is suggested to confer the property of high
           osmolority. It has also been demonstrated that mutants
           in this loci have lost functions of virulence and
           motility. It is unclear as to how virulence and
           osmoadaptaion are related.
          Length = 585

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 11/154 (7%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKDISV 90
           V+F   +G+ V ++G +G+GK+TL+ ++  +  P+ GQ+L  G  I     +   K I+ 
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413

Query: 91  VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAHTTEI 145
           VFQ   LF   ++ EN+ LG +    ++     +A +A D I     G D         +
Sbjct: 414 VFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472

Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
           SGG  QR+  ARA +    +L++DE  SALDV T
Sbjct: 473 SGGERQRLAIARAILKNAPILVLDEATSALDVET 506


>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 286

 Score = 74.2 bits (182), Expect = 6e-14
 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 31/215 (14%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82
           G    + KVN ++ S  +  ++G SG GKST LR I  +  + PS   +G ++F G+ I 
Sbjct: 50  GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109

Query: 83  DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSA 128
               D       I +VFQ    FP  ++ +N+  G +  GI DK+      E+  R  + 
Sbjct: 110 GKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL 168

Query: 129 IDLIG--LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
            D +   LD     +   +SGG  QR+  AR   V P +LL+DEP SALD      +  D
Sbjct: 169 WDEVSDRLD----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-D 223

Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
           LI   + G   I   ++VTHN+++A  + D  + F
Sbjct: 224 LIQ-ELRGSYTI---MIVTHNMQQASRVSDYTMFF 254


>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
          Length = 635

 Score = 74.2 bits (183), Expect = 7e-14
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 36/202 (17%)

Query: 22  SLKKISGNLL------VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
           SL  I G  L      +LD    ++   E V L+GR+G+GKSTL++I+ G V    G+++
Sbjct: 2   SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61

Query: 76  FKGKKI-----KDPPKDIS-VVF---------QTFALFPWLTVLENVELGLKAKGIDKEE 120
           ++   I     +DPP+++   V+         Q   L  +  +   VE     K +++  
Sbjct: 62  YEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELA 121

Query: 121 R-------------RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLL 167
           +               R    +  +GLD    A  + +SGG L++    RA V  P +LL
Sbjct: 122 KLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLL 179

Query: 168 MDEPFSALDVLTAENLRTDLID 189
           +DEP + LD+ T E L   L  
Sbjct: 180 LDEPTNHLDIETIEWLEGFLKT 201



 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 47/223 (21%)

Query: 26  ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP 85
           I G  LV D  +  V  G+ + L+G +G GK+TLL+++ G +   SG++   G K+    
Sbjct: 329 IDGKQLVKD-FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKL---- 382

Query: 86  KDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERR------------KRALSAIDLI 132
            +++   Q  A L P  TV++N+  G +   ++   R             KRA++ +   
Sbjct: 383 -EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPV--- 438

Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
                       +SGG   R+  AR F+   +LL++DEP + LDV T E L  +L+D + 
Sbjct: 439 ----------KALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE-LLEELLDSY- 486

Query: 193 EGRLPIESMLMVTHN---IEEAVLMCDRVLVFSSNPGRIAEEV 232
           +G +     L+V+H+   ++  V  C    +F  N G+I   V
Sbjct: 487 QGTV-----LLVSHDRQFVDNTVTEC---WIFEGN-GKIGRYV 520


>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
           Provisional.
          Length = 254

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 9   NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKS----TLLRIIA 64
            + +E+++I        +     ++  V+  +  G ++ L+G SGSGKS      L I+ 
Sbjct: 2   PQQIELRNIA-------LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54

Query: 65  GLVSPSSGQVLFKGKKI---KDPPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKE 119
             V  ++G+VL  GK +       + I+ + Q    A  P  T+  +      A G  K 
Sbjct: 55  AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG--KP 112

Query: 120 ERRKRALSAIDLIGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
                  +A++ +GL+        +  E+SGGMLQR+  A A +     ++ DEP + LD
Sbjct: 113 ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172

Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           V+ A+    DL++  ++ R     ML+VTH++     + D V V S   GRI E
Sbjct: 173 VV-AQARILDLLESIVQKRAL--GMLLVTHDMGVVARLADDVAVMSH--GRIVE 221


>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 214

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPPKDIS 89
           V   ++F+V +GE + + G +G+GK+TLLR++AGL+   SGQ+   GK     D  + ++
Sbjct: 26  VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85

Query: 90  VVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149
            +     L   L+ LEN+       G+     ++   SA+ ++GL G+E     ++S G 
Sbjct: 86  YLGHLPGLKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ 142

Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALD 176
            +R+  AR ++    L L+DEP++ LD
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLD 169


>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 329

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 31/237 (13%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKG-----K 79
           VL  +N ++   ++   +G SG GKST LR       +I G  +   G++ F G     K
Sbjct: 97  VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG--TSHEGEIYFLGTNTRSK 154

Query: 80  KIK--DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKE-------ERRKRALSAID 130
           KI   +    I +VFQ    F  +++ +NV  G +  GI+         E+  ++ +  D
Sbjct: 155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213

Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
            +  D  ++ +   +SGG  QR+  ARA  + P +LLMDEP SALD +    +   +++L
Sbjct: 214 EVKDDLDKAGNA--LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271

Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEF 247
             +      S+++VTH++ +A  + D  + F       A E      HP+N+ + ++
Sbjct: 272 KKK-----YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323


>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
           Provisional.
          Length = 582

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87
           L  +NF + +G+ V L+GRSGSGKST+  ++        G++L  G  ++D         
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418

Query: 88  ISVVFQTFALFPWLTVLENVELGLKAKGIDKE-ERRKRALSAIDLI-----GLDGFESAH 141
           +++V Q   LF   T+  N+      +   ++ E   R   A+D I     GLD     +
Sbjct: 419 VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477

Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
              +SGG  QR+  ARA +    +L++DE  SALD
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 45/167 (26%), Positives = 96/167 (57%), Gaps = 13/167 (7%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKDISV 90
           ++F +  G+ + ++G +GSGKSTL +++AG++ P+SG++L     +         + I +
Sbjct: 32  LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91

Query: 91  VFQ--TFALFPWLTVLENVELGLKAK-GIDKEERRKRALSAIDLIGL-DGFESAHTTEIS 146
           +FQ  + +L P   + + ++  L+    ++ E+R K+ +  +  +GL     S +   ++
Sbjct: 92  IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLA 151

Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
            G  QR+G ARA ++ P +++ DE  ++LD+    ++R+ LI+L +E
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDM----SMRSQLINLMLE 194


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score = 70.6 bits (174), Expect = 7e-13
 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 25/212 (11%)

Query: 8   DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
           D   L + ++  ++          VL  ++  + +GE V LLGR+G GKSTLL+++    
Sbjct: 335 DQVSLTLNNVSFTYP----DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390

Query: 68  SPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
            P  G++L  G+ I D  +      ISVV Q   LF   T+ +N+ L         +E  
Sbjct: 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPNAS---DEAL 446

Query: 123 KRALSAIDL-------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
              L  + L        GL+ +      ++SGG  +R+G ARA +    LLL+DEP   L
Sbjct: 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506

Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHN 207
           D  T E    +L+    + +    ++LM+TH 
Sbjct: 507 DAET-ERQILELLAEHAQNK----TVLMITHR 533


>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
           subunit; Provisional.
          Length = 265

 Score = 70.6 bits (173), Expect = 8e-13
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 23/216 (10%)

Query: 20  SFSLKKIS----GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
           +F+L+ +S    G  L L  ++    +G++ GL+G +GSGKSTLL+++     PS G++L
Sbjct: 11  TFALRNVSFRVPGRTL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69

Query: 76  FKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGL----KAKGIDKEERRKRAL 126
              + +     K   + ++ + Q       +TV E V +G      A G      R++  
Sbjct: 70  LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129

Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
            AI L+GL          +SGG  QR   A         LL+DEP SALD+      + D
Sbjct: 130 EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH----QVD 185

Query: 187 LIDLWIEGRLPIE---SMLMVTHNIEEAVLMCDRVL 219
           ++ L +  RL  E   +++ V H+I  A   CD ++
Sbjct: 186 VLAL-VH-RLSQERGLTVIAVLHDINMAARYCDYLV 219


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 38/262 (14%)

Query: 32   VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86
            VL  ++F +S  E VG++GR+G+GKS++L  +  +V    G++L  G  I      D  K
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313

Query: 87   DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141
             + ++ Q   LF   TV  N++   +    D  E  +RA    D+I     GLD   S  
Sbjct: 1314 VLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERA-HLKDVIRRNSLGLDAEVSEA 1371

Query: 142  TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD-LIDLWIEGRLPIES 200
                S G  Q +  ARA +    +L++DE  +A+DV      RTD LI   I       +
Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV------RTDALIQKTIREEFKSCT 1425

Query: 201  MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE---FRQIV------ 251
            ML++ H +   ++ CDR+LV  +  GR+ E        P N LS E   F ++V      
Sbjct: 1426 MLIIAHRL-NTIIDCDRILVLDA--GRVVE-----FDTPENLLSNEGSAFSKMVQSTGAA 1477

Query: 252  --EKIYALMTKKEEKRLNPLEN 271
              + + +L+   +E RL   E+
Sbjct: 1478 NAQYLRSLVFGGDEDRLAREES 1499



 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP-SSGQVLFKGKKIKDPPKDISVV 91
           L  +N +V  G +V ++G +G GK++L+  + G + P S   V+ +G     P   +S +
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP--QVSWI 690

Query: 92  FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI----DLIGLDGFESAHTTE--- 144
           F         TV +N+  G         ER +RA+       DL  L G +     E   
Sbjct: 691 FNA-------TVRDNILFGSPFD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739

Query: 145 -ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
            ISGG  QRV  ARA      + + D+P SALD
Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772


>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
            Members of this protein family have two copies of the
           ABC transporter ATP-binding cassette, but are found
           outside the common ABC transporter operon structure that
           features integral membrane permease proteins and
           substrate-binding proteins encoded next to the
           ATP-binding cassette (ABC domain) protein. The member
           protein ChvD from Agrobacterium tumefaciens was
           identified as both a candidate to interact with VirB8,
           based on yeast two-hybrid analysis, and as an apparent
           regulator of VirG. The general function of this protein
           family is unknown.
          Length = 552

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 19/178 (10%)

Query: 9   NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
           ++++E +++ + F      G+ L++D ++F +  G IVG++G +G+GKSTL R+I G   
Sbjct: 320 DKVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373

Query: 69  PSSGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-L 126
           P SG +   G+ +K     ++ V Q+  AL P  TV E +  GL    + K E   RA +
Sbjct: 374 PDSGTIKI-GETVK-----LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427

Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
              +  G D  +     ++SGG   RV  A+      ++LL+DEP + LDV   E LR
Sbjct: 428 GRFNFKGSD--QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV---ETLR 480



 Score = 67.6 bits (166), Expect = 6e-12
 Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 64/240 (26%)

Query: 24  KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83
           K +     +L  ++ +   G  +G+LG +G+GKSTLLRI+AG+    +G+          
Sbjct: 12  KVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR-------- 63

Query: 84  PPKDISVVF--QTFALFPWLTVLENVELGLK-----------------------AKGIDK 118
           P   I V +  Q   L P  TV ENVE G+                           + +
Sbjct: 64  PAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123

Query: 119 EERRKRALSAIDLIGLDGF------------ESAHTTEISGGMLQRVGFARAFVVFPSLL 166
           +   +  + A D   LD                A  T++SGG  +RV   R  +  P +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183

Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE---SMLMVTH------NIEEAVLMCDR 217
           L+DEP + LD   AE++       W+E  L  E   +++ VTH      N+   +L  DR
Sbjct: 184 LLDEPTNHLD---AESV------AWLEQHL-QEYPGTVVAVTHDRYFLDNVAGWILELDR 233


>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 569

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 28/187 (14%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
            L+ VNF +  G+++G+ G +GSGKSTLL +I      S G + F    +     D    
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389

Query: 88  -ISVVFQTFALFPWLTVLENVELGL-KAKGIDKEERRKRALSAIDLIGL-DGFESAHTTE 144
            ++VV QT  LF   TV  N+ LG   A   + E   + A    D++ L  G++    TE
Sbjct: 390 RLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD----TE 444

Query: 145 I-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA----ENLRTDLIDLWIE 193
           +       SGG  QR+  ARA ++   +L++D+  SA+D  T      NLR      W E
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ-----WGE 499

Query: 194 GRLPIES 200
           GR  I S
Sbjct: 500 GRTVIIS 506


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 24/163 (14%)

Query: 39  NVS----SGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGKKI-KDPPKDISV 90
           NVS     GE++ ++G SG+GK+TL+  +A         SG VL  G  I     + IS 
Sbjct: 43  NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA 102

Query: 91  VFQTFALF-PWLTVLENV----ELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT--- 142
             Q   LF P LTV E++     L +  + + K+E+R+R    +  +GL   + A+T   
Sbjct: 103 YVQQDDLFIPTLTVREHLMFQAHLRMPRR-VTKKEKRERVDEVLQALGL--RKCANTRIG 159

Query: 143 -----TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
                  +SGG  +R+ FA   +  P LL  DEP S LD   A
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202


>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
          Length = 248

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 42/168 (25%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD------------ 83
           ++  V +GEI+ L+G +G+GKSTLL  +AGL  P SG + F G+ ++             
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 84  -----PPKDISVVFQTFALF-PWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGLDG 136
                 P     VFQ   L  P  T  E V                 AL+ + + +GLD 
Sbjct: 74  LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA---------------SALNEVAEALGLDD 118

Query: 137 FESAHTTEISGGMLQRVGFARAFV-VFPS------LLLMDEPFSALDV 177
                  ++SGG  QRV  A   + V+P       LLL+DEP ++LDV
Sbjct: 119 KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score = 68.3 bits (168), Expect = 4e-12
 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87
              +NF + +G+ + L+G SG+GK++LL  + G + P  G +   G ++++       K 
Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH 424

Query: 88  ISVVFQTFALFPWLTVLENVELGLKAKGIDKEE-----RRKRALSAIDLI--GLDGFESA 140
           +S V Q   L    T+ +NV LG        E+             + L+  GLD     
Sbjct: 425 LSWVGQNPQLPHG-TLRDNVLLG--NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481

Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
               +S G  QR+  ARA +    LLL+DEP ++LD  + + +   L           ++
Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----QT 536

Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
            LMVTH +E+ +   D++ V     G+I ++
Sbjct: 537 TLMVTHQLED-LAQWDQIWVMQD--GQIVQQ 564


>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC.  SufC is part of the SUF
           system, shown in E. coli to consist of six proteins and
           believed to act in Fe-S cluster formation during
           oxidative stress. SufC forms a complex with SufB and
           SufD. SufC belongs to the ATP-binding cassette
           transporter family (pfam00005) but is no longer thought
           to be part of a transporter. The complex is reported as
           cytosolic (PubMed:12554644) or associated with the
           membrane (PubMed:11943156). The SUF system also includes
           a cysteine desulfurase (SufS, enhanced by SufE) and a
           probable iron-sulfur cluster assembly scaffold protein,
           SufA.
          Length = 243

 Score = 68.4 bits (168), Expect = 4e-12
 Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 40/243 (16%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG--LVSP 69
           L+I+D+  S   K+I      L  VN  V  GEI  ++G +GSGKSTL + IAG      
Sbjct: 1   LKIKDLHVSVEDKEI------LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV 54

Query: 70  SSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK 123
           +SG +LFKG+ + +   D      + + FQ     P ++ LE +   L A+   +  R +
Sbjct: 55  TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---RSARGE 111

Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQR---VGFA----------RAFVVFPSLLLMDE 170
             L  +D + L          +    L R    GF+          +  ++ P L ++DE
Sbjct: 112 EPLDLLDFLKLLK-AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE 170

Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHN--IEEAVLMCDRVLVFSSNPGRI 228
             S LD+  A  +  + I+     R P  S L++TH   +    +  D V V     GRI
Sbjct: 171 IDSGLDI-DALKIVAEGINRL---REPDRSFLIITHYQRLLNY-IKPDYVHVLLD--GRI 223

Query: 229 AEE 231
            + 
Sbjct: 224 VKS 226


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 30/218 (13%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKD 83
           +  VN     G+   ++G++GSGKSTL++ I  L+ P++G V           K K I+ 
Sbjct: 23  IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82

Query: 84  PPKDISVVFQTFALFPWLTVLEN-----VELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
             K I +VFQ    FP   + E+     +  G K   ++ +E +  A     L+   GF 
Sbjct: 83  VRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH---RLLMDLGFS 135

Query: 139 ----SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
               S    ++SGG ++++       + P ++++DEP + LD  +   +   L  L  + 
Sbjct: 136 RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195

Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
               +++++V+H++ E     D V+V     G I  + 
Sbjct: 196 N---KTIILVSHDMNEVARYADEVIVM--KEGSIVSQT 228


>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 67.8 bits (165), Expect = 6e-12
 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 33/207 (15%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIKDPPK 86
           VL  +N +    +I  ++G SG GKSTLLR +     +VS +   G VL   + I  P  
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78

Query: 87  DI-------SVVFQTFALFPWLTVLENVELGLKAKGIDKE-------ERRKRALSAIDLI 132
           D+        +VFQ    FP  ++ +NV  G +  G   +       E+  R  +  D +
Sbjct: 79  DVVNLRKRVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137

Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTDLID 189
             +  +S     +SGG  QR+  AR   + P ++LMDEP SALD ++    E L  +L  
Sbjct: 138 KDNLHKSG--LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195

Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCD 216
            +        ++ +VTHN+++A    D
Sbjct: 196 NY--------TIAIVTHNMQQAARASD 214


>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 67.7 bits (165), Expect = 6e-12
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK----- 86
           VL  +N + S   + GL+G +G GKSTL   ++GL+ P  G VL++GK +    +     
Sbjct: 16  VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75

Query: 87  --DISVVFQTFALFPWLTVLE-NVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
              ++ VFQ      + T ++ ++   L+  G+ + E  +R   A+ L+    F      
Sbjct: 76  RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135

Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
            +S G  +RV  A A V+    LL+DEP + LD
Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168


>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 305

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 50/234 (21%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDP--- 84
           L  V+ ++    +  L+G SG GKST LR +  +      +   G V   G+ I      
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 85  ----PKDISVVFQTFALFPWLTVLENV----------ELGLKAK--GIDKEERR----KR 124
                K + +VFQ+   FP  ++ EN+            GL A+  G D ++      +R
Sbjct: 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER 179

Query: 125 ALSAIDLIG-----LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VL 178
           +L    L       LD     +   +SGG  QR+  AR   V P ++LMDEP SALD + 
Sbjct: 180 SLRQAALWDEVNDRLDD----NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235

Query: 179 TA--ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           T+  E+L  +L + +        ++++VTHN+++A  + D+  VF +  G + E
Sbjct: 236 TSKIEDLIEELAEEY--------TVVVVTHNMQQAARISDQTAVFLTG-GELVE 280


>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 67.3 bits (164), Expect = 6e-12
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 24/206 (11%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIK 82
           G    L  V+  +    +  L+G SG GKST +R +     L+      G+V  +G+ I 
Sbjct: 23  GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82

Query: 83  DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL- 134
           +P        K++ +VFQ    FP +++ +NV  G +  G +K++      +A+    L 
Sbjct: 83  EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALW 141

Query: 135 ----DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
               D  +S     +SGG  QR+  AR   V P ++L DEP SALD ++   +   +++L
Sbjct: 142 DETSDRLKSP-ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200

Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCD 216
             +      ++++VTHN+++A  + D
Sbjct: 201 KKD-----YTIVIVTHNMQQAARISD 221


>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 272

 Score = 67.2 bits (164), Expect = 8e-12
 Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 38/242 (15%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--------SGQVLFKGKKIK- 82
           +L  ++  +  G +  LLGR+G+GKSTLL+ +AG ++          +G V   G+ +  
Sbjct: 16  ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75

Query: 83  -DPPK--DISVVFQTFA--LFPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIG 133
            D P+   +  V    A   F + +  E V LG     +  G       + A  A+ L G
Sbjct: 76  IDAPRLARLRAVLPQAAQPAFAF-SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134

Query: 134 LDGFESAHTTEISGGMLQRVGFARAF---------VVFPSLLLMDEPFSALDVLTAENLR 184
                    T +SGG L RV FAR              P  LL+DEP +ALD+     L 
Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194

Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLS 244
             +  L  +  L    +L + H+   A    DR+ +       +A+  +++   P + L+
Sbjct: 195 DTVRRLARDWNL---GVLAIVHDPNLAARHADRIAM-------LADGAIVAHGAPADVLT 244

Query: 245 PE 246
           P 
Sbjct: 245 PA 246


>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 200

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 19/166 (11%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP----PK 86
            +L +++F++ +G ++ L G +G+GK+TLL++IAGL++P  G++LF+ + IK       K
Sbjct: 15  PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74

Query: 87  DISVVFQTFALFPWLTVLENVELGLK----AKGIDKEERRKRALSAIDL-IGLDGFESAH 141
            +  V     + P+LT+ EN    +     A GI +  R       ID   GL       
Sbjct: 75  QLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGL------- 127

Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
              +S G  ++V   R ++    L L+DEP  ALD L+   + T +
Sbjct: 128 ---LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170


>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
           regulator (CFTR).  The model describes the cystis
           fibrosis transmembrane conductor regulator (CFTR) in
           eukaryotes. The principal role of this protein is
           chloride ion conductance. The protein is predicted to
           consist of 12 transmembrane domains. Mutations or
           lesions in the genetic loci have been linked to the
           aetiology of asthma, bronchiectasis, chronic obstructive
           pulmonary disease etc. Disease-causing mutations have
           been studied by 36Cl efflux assays in vitro cell
           cultures and electrophysiology, all of which point to
           the impairment of chloride channel stability and not the
           biosynthetic processing per se.
          Length = 1490

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 27/163 (16%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
           VL  ++F +  G+++ + G +GSGKS+LL +I G + PS G++   G+        IS  
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------ISFS 492

Query: 92  FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFESAHTT---- 143
            Q      W+   T+ +N+  GL       E R    + A  L   +  F     T    
Sbjct: 493 PQ----TSWIMPGTIKDNIIFGLSY----DEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544

Query: 144 ---EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
               +SGG   R+  ARA      L L+D PF+ LDV+T + +
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587



 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 27/220 (12%)

Query: 19   QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
            Q  + K       VL  ++F+V  G+ VGLLGR+GSGKSTLL  +  L+S + G++   G
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG 1279

Query: 79   ------------KKIKDPPKDISVVFQTFA--LFPWLTVLENVELGLKAKGIDKEERRKR 124
                        K     P+ + +   TF   L P+     + E+   A+ +  +   ++
Sbjct: 1280 VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQ 1338

Query: 125  ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
                +D + +DG        +S G  Q +  AR+ +    +LL+DEP + LD +T + +R
Sbjct: 1339 FPDKLDFVLVDG-----GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR 1393

Query: 185  TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
              L   +        ++++  H + EA+L C + LV   +
Sbjct: 1394 KTLKQSFSNC-----TVILSEHRV-EALLECQQFLVIEGS 1427


>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter.  This model
           describes cyclic peptide transporter in bacteria.
           Bacteria have elaborate pathways for the production of
           toxins and secondary metabolites. Many such compounds,
           including syringomycin and pyoverdine are synthesized on
           non-ribosomal templates consisting of a multienzyme
           complex. On several occasions the proteins of the
           complex and transporter protein are present on the same
           operon. Often times these compounds cross the biological
           membrane by specific transporters. Syringomycin is an
           amphipathic, cylclic lipodepsipeptide when inserted into
           host causes formation of channels, permeable to variety
           of cations. On the other hand, pyoverdine is a cyclic
           octa-peptidyl dihydroxyquinoline, which is efficient in
           sequestering iron for uptake.
          Length = 555

 Score = 63.8 bits (155), Expect = 9e-11
 Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 17/206 (8%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD----- 87
           L  ++  ++ G+IV ++G +G GKSTL ++  GL  P  G++L  G  +    +D     
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417

Query: 88  ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISG 147
            S +F  F LF  L   +  E       +D  ++  + L   D + ++    + TT +S 
Sbjct: 418 FSAIFADFHLFDDLIGPDEGE----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473

Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI-DLWIEGRLPIESMLMVTH 206
           G  +R+    A++    +LL DE  +  D         +L+ DL  +G+    ++++++H
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK----TIIIISH 529

Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEEV 232
           + ++   + D+++  ++  G I ++ 
Sbjct: 530 D-DQYFELADQIIKLAA--GCIVKDT 552


>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 30/190 (15%)

Query: 22  SLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV-LFK 77
            ++K+S   G+ ++LD +  N+  G  +GLLGR+G+GKSTL++++AG ++P SG++ L K
Sbjct: 314 KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK 373

Query: 78  GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLK--AKGIDKE-ERRKRALSAIDLIGL 134
           G K+             FA    L  L   E  L+  A+   +E E++ R     D +G 
Sbjct: 374 GIKLG-----------YFAQHQ-LEFLRADESPLQHLARLAPQELEQKLR-----DYLGG 416

Query: 135 DGFESAHTTEI----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
            GF+    TE     SGG   R+  A      P+LLL+DEP + LD+   + L   LID 
Sbjct: 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF 476

Query: 191 WIEGRLPIES 200
             EG L + S
Sbjct: 477 --EGALVVVS 484



 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 47/190 (24%)

Query: 22  SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
           SL+   G  ++LD     ++ G+ VGL+G++G GKSTLL ++   +S   G   F     
Sbjct: 6   SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF----- 60

Query: 82  KDPPKDISVVF---QTFALFPWLTVLENVELG------LKAKGIDKEER----------- 121
              P +  + +   +T AL      LE V  G      L+A+  D  ER           
Sbjct: 61  ---PGNWQLAWVNQETPALP--QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHG 115

Query: 122 ----------RKRALSAIDLIGLDGFESAHTTE----ISGGMLQRVGFARAFVVFPSLLL 167
                     R RA S +   GL GF +          SGG   R+  A+A +    LLL
Sbjct: 116 KLDAIDAWTIRSRAASLLH--GL-GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172

Query: 168 MDEPFSALDV 177
           +DEP + LD+
Sbjct: 173 LDEPTNHLDL 182


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 20/209 (9%)

Query: 32   VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPK 86
            VL  ++F VS  E VG++GR+G+GKS++L  +  +V    G+++     +      D  +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310

Query: 87   DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA--LSAIDL--IGLDGFESAHT 142
             +S++ Q+  LF   TV  N++   +    D  E  +RA     ID    GLD   S   
Sbjct: 1311 VLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369

Query: 143  TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD-LIDLWIEGRLPIESM 201
               S G  Q +  ARA +    +L++DE  +++DV      RTD LI   I       +M
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDV------RTDSLIQRTIREEFKSCTM 1423

Query: 202  LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
            L++ H +   ++ CD++LV SS  G++ E
Sbjct: 1424 LVIAHRL-NTIIDCDKILVLSS--GQVLE 1449



 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 29/208 (13%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-SGQVLFKGKKIKDPPKDISVV 91
           L  +N  +  G +V ++G +G GK++L+  + G +S + +  V+ +G     P   +S +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVP--QVSWI 690

Query: 92  FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-GLDGFESAHTTEI----- 145
           F         TV EN+  G   +     ER  RA+    L   LD       TEI     
Sbjct: 691 FNA-------TVRENILFGSDFE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739

Query: 146 --SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
             SGG  QRV  ARA      + + D+P SALD   A  +    +   ++G+    + ++
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGK----TRVL 795

Query: 204 VTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
           VT+ +    LM DR+++ S   G I EE
Sbjct: 796 VTNQLHFLPLM-DRIILVSE--GMIKEE 820


>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
           protein; Provisional.
          Length = 265

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 28/242 (11%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----K 82
           G   V + +   +  G    ++G +G GKSTLLR ++ L++P+ G V   G+ I     K
Sbjct: 18  GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77

Query: 83  DPPKDISVVFQTFALFPWLTVLENVELG------LKAKGIDKEERRKRALSAIDLIGLDG 136
           +  + I ++ Q       +TV E V  G      L  +   ++E  +    A+   G+  
Sbjct: 78  EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW--RKEDEEAVTKAMQATGITH 135

Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE-GR 195
                   +SGG  QR   A       +++L+DEP + LD+    + + DL++L  E  R
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI----SHQIDLLELLSELNR 191

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQIVEKIY 255
               ++  V H++ +A      ++      G+I  +       P+  ++ E   ++E+IY
Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIALRE--GKIVAQ-----GAPKEIVTAE---LIERIY 241

Query: 256 AL 257
            L
Sbjct: 242 GL 243


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 39/168 (23%)

Query: 43  GEIVGLLGRSGSGKSTLLRIIAGLVSPS----SGQVLFKGKKIKDPPKDI------SVVF 92
           GE+  +LGR GSG STLL+ IA           G + + G      P++I       VV+
Sbjct: 87  GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI----TPEEIKKHYRGDVVY 142

Query: 93  --QTFALFPWLTVLENVEL-------GLKAKGIDKEERRKRALSAIDLI-GLDGFESAHT 142
             +T   FP LTV E ++          +  G+ +EE  K          GL      HT
Sbjct: 143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-----HT 197

Query: 143 TE----------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
                       +SGG  +RV  A A +    +   D     LD  TA
Sbjct: 198 RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245



 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 15  QDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP---SS 71
           +++     +KK     ++L+ V+  V  G +  L+G SG+GK+TLL ++A  V+    + 
Sbjct: 763 RNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820

Query: 72  GQVLFKGKKIKDP-PKDISVVFQTFALFPWLTVLENVELGL---KAKGIDKEERRKRALS 127
           G  L  G+ +     + I  V Q     P  TV E++       + K + K E+ +    
Sbjct: 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880

Query: 128 AIDLIGLDGFESAHTTEISGGM----LQRVGFARAFVVFPSLLL-MDEPFSALDVLTA 180
            I L+ ++ +  A       G+     +R+      V  P LLL +DEP S LD  TA
Sbjct: 881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938


>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
           Reviewed.
          Length = 556

 Score = 59.0 bits (144), Expect = 3e-09
 Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 86/251 (34%)

Query: 24  KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ-VLFKGKKI- 81
           K +     +L  ++ +   G  +G+LG +G+GKSTLLRI+AG+     G+     G K+ 
Sbjct: 14  KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG 73

Query: 82  ---KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG----- 133
              ++P  D           P  TV ENVE G+           K AL   + I      
Sbjct: 74  YLPQEPQLD-----------PEKTVRENVEEGVAEV--------KAALDRFNEIYAAYAE 114

Query: 134 ---------------------LDGFESAHTTEI-----------------SGGMLQRVGF 155
                                 D ++     EI                 SGG  +RV  
Sbjct: 115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVAL 174

Query: 156 ARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL---PIESMLMVTH------ 206
            R  +  P +LL+DEP + LD   AE++       W+E  L   P  +++ VTH      
Sbjct: 175 CRLLLEKPDMLLLDEPTNHLD---AESV------AWLEQFLHDYP-GTVVAVTHDRYFLD 224

Query: 207 NIEEAVLMCDR 217
           N+   +L  DR
Sbjct: 225 NVAGWILELDR 235



 Score = 57.1 bits (139), Expect = 1e-08
 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 19/178 (10%)

Query: 9   NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
           ++++E +++ +SF      G+ L++D ++F++  G IVG++G +G+GKSTL ++I G   
Sbjct: 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375

Query: 69  PSSGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-L 126
           P SG +     KI +  K ++ V Q+  AL P  TV E +  GL    +   E   RA +
Sbjct: 376 PDSGTI-----KIGETVK-LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429

Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
              +  G D  +      +SGG   R+  A+      ++LL+DEP + LDV   E LR
Sbjct: 430 GRFNFKGGD--QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV---ETLR 482


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
           (MRP).  This model describes multi drug
           resistance-associated protein (MRP) in eukaryotes. The
           multidrug resistance-associated protein is an integral
           membrane protein that causes multidrug resistance when
           overexpressed in mammalian cells. It belongs to ABC
           transporter superfamily. The protein topology and
           function was experimentally demonstrated by epitope
           tagging and immunofluorescence. Insertion of tags in the
           critical regions associated with drug efflux, abrogated
           its function. The C-terminal domain seem to highly
           conserved.
          Length = 1522

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 32/209 (15%)

Query: 33  LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
           L+ + F++  G +V ++G+ G GKS+LL  +   +    G V  KG     P +      
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ------ 707

Query: 93  QTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDLIG-LDGFESAHTTEI--- 145
                  W+   ++ EN+  G        E+  ++ L A  L+  L+   S   TEI   
Sbjct: 708 ------AWIQNDSLRENILFGKALN----EKYYQQVLEACALLPDLEILPSGDRTEIGEK 757

Query: 146 ----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
               SGG  QRV  ARA      + L D+P SA+D    +++   +I    EG L  ++ 
Sbjct: 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG--PEGVLKNKTR 815

Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
           ++VTH I   +   D ++V S   G+I+E
Sbjct: 816 ILVTHGI-SYLPQVDVIIVMSG--GKISE 841



 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 32/228 (14%)

Query: 19   QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
            +++ L+      LVL  +N  +  GE VG++GR+G+GKS+L   +  +   + G+++  G
Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347

Query: 79   KKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133
              I      D    I+++ Q   LF       ++ + L       +E       A++L  
Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFS-----GSLRMNLDPFSQYSDE---EVWWALELAH 1399

Query: 134  LDGFESAHTTE-----------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
            L  F SA   +           +S G  Q V  ARA +    +L++DE  +A+D+ T   
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET--- 1456

Query: 183  LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
               +LI   I  +    ++L + H +   ++   RV+V   + G +AE
Sbjct: 1457 --DNLIQSTIRTQFEDCTVLTIAHRL-NTIMDYTRVIVL--DKGEVAE 1499


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 28/191 (14%)

Query: 43  GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLT 102
           GE++G++G +G GK+T  +++AG++ P  G+V  +  KI   P+ I   +         T
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYD-------GT 416

Query: 103 V---LENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159
           V   L ++   L +     E  +   L  +        +  +  ++SGG LQRV  A   
Sbjct: 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERL-------LDK-NVKDLSGGELQRVAIAACL 468

Query: 160 VVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCD 216
                L L+DEP + LDV   L         I    E R    + L+V H+I     + D
Sbjct: 469 SRDADLYLLDEPSAHLDVEQRLAV----AKAIRRIAEERE--ATALVVDHDIYMIDYISD 522

Query: 217 RVLVFSSNPGR 227
           R++VF   PG+
Sbjct: 523 RLMVFEGEPGK 533



 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 36/162 (22%)

Query: 40  VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ---------VL--FKG-------KKI 81
              G++ G+LG +G GK+T ++I++G + P+ G          VL  F+G       KK+
Sbjct: 96  PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155

Query: 82  KDPPKDISVVFQTFALFPWLTVLENVELGLKA-KG-----IDKEERRKRALSAIDLIGLD 135
            +   +I VV +           + V+L  K  KG     + K + R +    ++ +GL+
Sbjct: 156 YN--GEIKVVHKP----------QYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLE 203

Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
                  +E+SGG LQRV  A A +        DEP S LD+
Sbjct: 204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245


>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 20/104 (19%)

Query: 5   AIKDNRLLEIQDIC-----QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL 59
           A  D + LE++++        FS+  I          N  +  GE++ L+G +GSGKSTL
Sbjct: 316 AFPDWQTLELRNVTFAYQDNGFSVGPI----------NLTIKRGELLFLIGGNGSGKSTL 365

Query: 60  LRIIAGLVSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALF 98
             ++ GL  P SG++L  GK +     +      S VF  F LF
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409


>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
          Provisional.
          Length = 258

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 20/58 (34%), Positives = 38/58 (65%)

Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK 79
           L K+ G       V+F++  GE++G++G SGSGK+TLL  ++  ++P +G+V ++ +
Sbjct: 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68



 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI-DLWIEGRLPIESMLMV 204
           SGGM QR+  AR  V  P L+ MDEP   LDV     L  DL+  L  E  L   ++++V
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL-LDLLRGLVRELGL---AVVIV 208

Query: 205 THNIEEAVLMCDRVLVFSSNPGRIAE 230
           TH++  A L+  R+LV     GR+ E
Sbjct: 209 THDLAVARLLAHRLLVMKQ--GRVVE 232


>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
          Length = 718

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 18/181 (9%)

Query: 28  GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
           G  L+   +NF +     + ++G +G GKST+L++I+G + PSSG V F+  K++     
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVR----- 573

Query: 88  ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISG 147
           ++V  Q       L+    + +     G+  E++ +  L +  + G    +  +T  +SG
Sbjct: 574 MAVFSQHHVDGLDLSSNPLLYMMRCFPGV-PEQKLRAHLGSFGVTGNLALQPMYT--LSG 630

Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTH 206
           G   RV FA+     P +LL+DEP + LD+        D ++  I+G +  +  +LMV+H
Sbjct: 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDL--------DAVEALIQGLVLFQGGVLMVSH 682

Query: 207 N 207
           +
Sbjct: 683 D 683



 Score = 39.8 bits (93), Expect = 0.001
 Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 66/247 (26%)

Query: 5   AIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR--- 61
           AIKD  +       ++FS+  + G  L++D  +  ++ G   GL+GR+G+GK+T LR   
Sbjct: 174 AIKDIHM-------ENFSIS-VGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMA 224

Query: 62  --IIAGLVSPSSGQVL-FKGKKIKDPPKDISVVFQT-----------FALFPWLTVLENV 107
              I G+  P + Q+L  + + + D    +  V  T             L      LE  
Sbjct: 225 MHAIDGI--PKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE 282

Query: 108 ELGLKAKGIDKEERRKRALSA--------IDLIGLDGFES-----------------AHT 142
               K KG +K+   K A+S         ++LI     E+                   T
Sbjct: 283 TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT 342

Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL---PIE 199
              SGG   R+  ARA  + P LLL+DEP + LD+            LW+E  L   P +
Sbjct: 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV---------LWLETYLLKWP-K 392

Query: 200 SMLMVTH 206
           + ++V+H
Sbjct: 393 TFIVVSH 399


>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 195

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 50  GRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVE 108
           G +G GKS+LLR+IAG++ PSSG + +K   I +  K   + +     L   +TV EN  
Sbjct: 33  GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFEN-- 90

Query: 109 LGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLM 168
           L   ++  +  E      +AI    L          +S GM + V  AR       L L+
Sbjct: 91  LKFWSEIYNSAE---TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147

Query: 169 DEPFSALD 176
           DE  + L 
Sbjct: 148 DEVETNLS 155


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
           activities.  AAA - ATPases associated with a variety of
           cellular activities. This profile/alignment only detects
           a fraction of this vast family. The poorly conserved
           N-terminal helix is missing from the alignment.
          Length = 148

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 45/171 (26%)

Query: 42  SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWL 101
            GE++ ++G  GSGK+TL R +A  + P  G V++                         
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------------------- 35

Query: 102 TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVV 161
                         ID E+  +  L  + LI + G +       SG +  R+  A A  +
Sbjct: 36  --------------IDGEDILEEVLDQLLLIIVGGKK----ASGSGELRLRLALALARKL 77

Query: 162 FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTHNIEE 210
            P +L++DE  S LD      L        +      ++  +++ T++ ++
Sbjct: 78  KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128


>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
          Length = 1560

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 43/194 (22%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
           +L  V+ +V  G++  +LG +GSGKSTLL+ +      S G+V  +        + I+ V
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------RSIAYV 726

Query: 92  FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAI-------DLIGLDGFESAH 141
            Q      W+   TV  N+         D EE   R   A+       DL  L G     
Sbjct: 727 PQQ----AWIMNATVRGNILF------FD-EEDAARLADAVRVSQLEADLAQLGG---GL 772

Query: 142 TTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
            TEI       SGG   RV  ARA      + L+D+P SALD    E +  +       G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC----FLG 828

Query: 195 RLPIESMLMVTHNI 208
            L  ++ ++ TH +
Sbjct: 829 ALAGKTRVLATHQV 842



 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 25/163 (15%)

Query: 31   LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP 85
            LVL  V+F ++  E VG++GR+GSGKSTLL     +V    G++   G++I     ++  
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383

Query: 86   KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
            +  S++ Q   LF   TV +NV+  L+A   +         +A++L+GL    ++ +  I
Sbjct: 1384 RQFSMIPQDPVLFDG-TVRQNVDPFLEASSAE-------VWAALELVGLRERVASESEGI 1435

Query: 146  -----------SGGMLQRVGFARAFVVFPS-LLLMDEPFSALD 176
                       S G  Q +  ARA +   S  +LMDE  + +D
Sbjct: 1436 DSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
          Length = 1466

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 20/170 (11%)

Query: 70   SSGQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
            +SG++L  G  I     KD     S+V Q   LF  +++ EN++ G K     ++ +R  
Sbjct: 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFG-KEDATREDVKRAC 1332

Query: 125  ALSAIDLIGLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
              +AID   ++   + + T +       SGG  QR+  ARA +  P +LL+DE  S+LD 
Sbjct: 1333 KFAAIDEF-IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391

Query: 178  LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR 227
             + + +   ++D+  +     ++++ + H I  ++   D+++VF +NP R
Sbjct: 1392 NSEKLIEKTIVDIKDKAD---KTIITIAHRI-ASIKRSDKIVVF-NNPDR 1436



 Score = 38.1 bits (88), Expect = 0.005
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
           +NF ++ G+    +G SG GKST+L++I  L  P+ G ++
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443



 Score = 36.5 bits (84), Expect = 0.013
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
           ++ +++SGG  QR+  ARA +  P +L++DE  S+LD
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611



 Score = 27.7 bits (61), Expect = 6.8
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 2    ANIAIKDN---RLLEIQDICQSFSLKKIS------GNLLVLDKVNFNVSSGEIVGLLGRS 52
            +NI ++DN   R+    DI     +  ++       N+ +   + F+  S +   ++G +
Sbjct: 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203

Query: 53   GSGKSTLLRII 63
            GSGKST++ ++
Sbjct: 1204 GSGKSTVMSLL 1214


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 20/160 (12%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
           LVL  +N +V S   V L+G +GSGKSTL  ++ G    + G++   G+ +       SV
Sbjct: 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH--SV 412

Query: 91  VFQTFALF---PWL---TVLENVELGLKAKGIDKEERRKRALSAIDLIGL-----DGFES 139
           + Q  A+    P +   T L NV LG   + I  EE+  +AL  + L  L     DG  +
Sbjct: 413 LRQGVAMVQQDPVVLADTFLANVTLG---RDIS-EEQVWQALETVQLAELARSLPDGLYT 468

Query: 140 ---AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
                   +S G  Q +  AR  V  P +L++DE  + +D
Sbjct: 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508


>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
           Family protei. 
          Length = 659

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 36/170 (21%)

Query: 27  SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86
           +G++L+ + ++F V SG  + + G +G GKS+L RI+  L        ++ G+  K    
Sbjct: 463 NGDVLI-ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP------VYGGRLTKPAKG 515

Query: 87  DISVVFQTFALFPWLTVLENVELG-LKAKGI---DKEERRKRALSAIDLIG-LD------ 135
            +  V Q     P++T      LG L+ + I     E+ ++R LS  DL   LD      
Sbjct: 516 KLFYVPQR----PYMT------LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH 565

Query: 136 ------GFESAH--TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
                 G+ +       +SGG  QR+  AR F   P   ++DE  SA+ V
Sbjct: 566 ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615


>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
           ATP-binding protein; Provisional.
          Length = 330

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 49/263 (18%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
           LL+I+++   F  K   G +  +D+V+  ++ GEI GL+G SGSGKS + + I G V+  
Sbjct: 3   LLDIRNLTIEF--KTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VTKD 59

Query: 71  SGQVLFKGKKIKD-------PPK-------DISVVFQTFALFPW--LTVLENVELGL--- 111
           + +V     +  D       P +       ++S++FQ     P   L   E V   L   
Sbjct: 60  NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE----PQSCLDPSERVGRQLMQN 115

Query: 112 ------KAKGIDKEERRKRALSAIDLIGLDGFE------SAHTTEISGGMLQRVGFARAF 159
                 K +   +   RKR   AI+L+   G +       +   E++ G  Q+V  A A 
Sbjct: 116 IPGWTYKGRWWQRFGWRKR--RAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIAL 173

Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
              P LL+ DEP +A++  T   +   L  L       I   L+++H+++      D++ 
Sbjct: 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTI---LLISHDLQMLSQWADKIN 230

Query: 220 VFSSNPGRIAE----EVLISIPH 238
           V     G+  E    + L++ PH
Sbjct: 231 VLYC--GQTVETAPSKELVTTPH 251


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 12  LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
           LE++++ + F       N  +   +N  + +GE + ++G +G GK+TLLR + G + P S
Sbjct: 320 LEVENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373

Query: 72  GQV 74
           G V
Sbjct: 374 GTV 376



 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 41/167 (24%)

Query: 47  GLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQ-TFALFPWLTVLE 105
           GL+G +G GKST ++I+ G + PS+G V        DP + +  + Q  FA F   TVL+
Sbjct: 31  GLIGANGCGKSTFMKILGGDLEPSAGNV------SLDPNERLGKLRQDQFA-FEEFTVLD 83

Query: 106 NVELGLKAKGIDKEER-RKRALS---------AIDLIG----LDGF-------------- 137
            V +G       K+ER R  AL            DL      +DG+              
Sbjct: 84  TVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143

Query: 138 --ESAHT---TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
             E  H    +E++ G   RV  A+A    P +LL+DEP + LD+ T
Sbjct: 144 IPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 33/202 (16%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG--LVSPSSGQVLF-----KGKKIKDP 84
           +L  +++ V+ GE   ++G +G+GKSTLL +I G      S+   LF      G+ I D 
Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334

Query: 85  PKDISVVFQTFAL-FPWLTVLENVEL-------GLKAKGIDKEERRKRALSAIDLIGLDG 136
            K I  V  +  L +   T + NV L       G+     D++  +K A   +D++G+D 
Sbjct: 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ--QKLAQQWLDILGIDK 392

Query: 137 ------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
                 F S     +S G  +     RA V  P+LL++DEP   LD L  + +R   +D+
Sbjct: 393 RTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDV 446

Query: 191 WI-EGRLPIESMLMVTHNIEEA 211
            I EG      +L V+H+ E+A
Sbjct: 447 LISEGE---TQLLFVSHHAEDA 465



 Score = 36.5 bits (85), Expect = 0.015
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 17/176 (9%)

Query: 29  NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KD 83
             L L   +  +++G+    +G +GSGKS L R +AG +   SG+   +   I     + 
Sbjct: 17  KTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ 74

Query: 84  PPKDISVVFQ---TFALFPWLTVLENVELGLKAKGIDKEERRKRALSA--IDLIGLDGFE 138
             K +S  +Q   T  L P        + G     I ++E +  A         G+    
Sbjct: 75  LQKLVSDEWQRNNTDMLSP-----GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALL 129

Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
                 +S G  ++    +A +  P LL++DEPF  LDV + + L   L  L   G
Sbjct: 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185


>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
           VexC; Provisional.
          Length = 213

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 31  LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
           +VLDK +F +   E +G+L   GSGK+TL R++ GL +P  G   F G +    P   + 
Sbjct: 1   VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD--FIGLRGDALPLGAN- 57

Query: 91  VFQTFALFPWLTVLENVELGLKAKGIDKEE 120
              +F L P LT  EN  +     G+D +E
Sbjct: 58  ---SFIL-PGLTGEENARMMASLYGLDGDE 83


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 28/158 (17%)

Query: 43   GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALF---- 98
            G +  L+G SG+GK+TL+ ++AG     +G  +    +I   PK      +TFA      
Sbjct: 906  GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPK----KQETFARISGYC 958

Query: 99   -------PWLTVLENVE----LGLKAKGIDKEERRKRALSAIDLIGLDGFESA-----HT 142
                   P +TV E++     L L  K + KEE+       ++L+ LD  + A       
Sbjct: 959  EQNDIHSPQVTVRESLIYSAFLRL-PKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017

Query: 143  TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
            T +S    +R+  A   V  PS++ MDEP S LD   A
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055



 Score = 36.4 bits (84), Expect = 0.016
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 44/176 (25%)

Query: 48  LLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGKKIKD--PPKDISVVFQTFALFPWLT 102
           LLG   SGK+TLL  +AG + PS   SG++ + G ++ +  P K  + + Q       +T
Sbjct: 196 LLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255

Query: 103 VLENVELGLKAKGIDKE--------ERRKRA----LSAIDL----IGLDGFESAHTTE-- 144
           V E ++   + +G+            R K A     + +DL      ++G +S+  T+  
Sbjct: 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYT 315

Query: 145 ---------------------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
                                ISGG  +RV      V     L MDE  + LD  T
Sbjct: 316 LKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371


>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
          Length = 248

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 47/223 (21%)

Query: 11  LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VS 68
           +L I+D+  S   K I      L  +N  V  GE+  ++G +GSGKSTL   +AG     
Sbjct: 1   MLSIKDLHVSVEDKAI------LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE 54

Query: 69  PSSGQVLFKGKKIKD-PPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
            + G V FKGK + +  P+D     I + FQ     P ++    ++  L A       R 
Sbjct: 55  VTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV------RS 108

Query: 123 KRALSAIDLIGLDGF--ESAHTTEISGGMLQR---VGFA----------RAFVVFPSLLL 167
            R    +D         E     ++   +L R   VGF+          +  V+ P L +
Sbjct: 109 YRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168

Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEG----RLPIESMLMVTH 206
           +DE  S LD+        D + +  +G    R    S ++VTH
Sbjct: 169 LDESDSGLDI--------DALKIVADGVNSLRDGKRSFIIVTH 203


>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
          Length = 327

 Score = 32.3 bits (74), Expect = 0.23
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSP 69
          ++G+ G SG GK+T LR +A L+  
Sbjct: 10 LLGVAGDSGCGKTTFLRGLADLLGE 34


>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
          Length = 356

 Score = 31.4 bits (72), Expect = 0.51
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 40  VSSGEIVGLLGRSGSGKSTL 59
           +S G+ V LLG SG GKSTL
Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211


>gnl|CDD|149727 pfam08757, CotH, CotH protein.  Members of this family include the
           spore coat protein H (cotH).
          Length = 298

 Score = 30.7 bits (70), Expect = 0.74
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 374 NLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETID 411
            L RR+LD+    +   ARF   L    +EE     ID
Sbjct: 217 PLFRRLLDDPAFRARYKARFEELLNGVFTEERLLAKID 254


>gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3.  cereus
          E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas
          haloplanktis TAC12, and Escherichia coli B7A.
          Length = 504

 Score = 30.3 bits (68), Expect = 0.95
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR 61
          +L K N  + S  ++ L G SG GKS +L 
Sbjct: 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA 50


>gnl|CDD|163043 TIGR02858, spore_III_AA, stage III sporulation protein AA.  Members
           of this protein are the stage III sporulation protein
           AA, encoded by one of several genes in the spoIIIA
           locus. It seems that this protein is found in a species
           if and only if that species is capable of endospore
           formation.
          Length = 270

 Score = 30.4 bits (69), Expect = 1.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 48  LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
           ++     GK+TLLR +A ++S    Q+  +GKK+
Sbjct: 116 IISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149


>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
          Length = 438

 Score = 30.1 bits (68), Expect = 1.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 38  FNVSSGEIVGLLGRSGSGKSTLLRIIA 64
             V  G+ VG+   SG GKSTL+ +IA
Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMIA 179


>gnl|CDD|180023 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid;
           Reviewed.
          Length = 436

 Score = 30.1 bits (69), Expect = 1.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 29/77 (37%)

Query: 75  LFKGKKIKDPPKD---------ISVV----FQ----TFALFPWLTVLENVELGLKAKGID 117
           L  GK+   PP           I+      FQ     F LFP         LG + +G D
Sbjct: 362 LALGKEPVIPPPTTALGALLNYITGANPKHFQPMNANFGLFP--------PLGKRIRGED 413

Query: 118 KEERRK----RALSAID 130
           K+ER++    RAL+ + 
Sbjct: 414 KKERKEAYAERALADLK 430


>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase.  This model produces
          scores in the range of 0-25 bits against adenylate,
          guanylate, uridine, and thymidylate kinases.
          Length = 188

 Score = 30.0 bits (68), Expect = 1.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 45 IVGLLGRSGSGKSTLLRIIA 64
          I+GL G  GSGKST+   +A
Sbjct: 1  IIGLTGGIGSGKSTVANYLA 20


>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase.
          Length = 434

 Score = 29.7 bits (67), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 109 LGLKAKGIDKEERRKRALSAIDLIGL-DGF 137
           LG+ AKG D  E R RA  A+D I    GF
Sbjct: 386 LGVTAKGKDIAEARARAYDAVDQIDWPGGF 415


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 29.5 bits (66), Expect = 1.6
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 9/62 (14%)

Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP----IESMLMVTHN 207
           RV  A+      SLL+MDEP + LD    E+ RT+L D+ IE  L     I  ++M++H+
Sbjct: 815 RVAVAQFLNNDKSLLIMDEPTAFLD----EDRRTNLKDI-IEYSLKDSSDIPQVIMISHH 869

Query: 208 IE 209
            E
Sbjct: 870 RE 871


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 29.0 bits (65), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTL 59
          L  ++      EIV L G SGSGKS+L
Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42


>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
          Length = 201

 Score = 29.1 bits (66), Expect = 2.4
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 44 EIVGLLGRSGSGKSTLLRIIAG 65
          EIV  +GRS  GKSTL+R + G
Sbjct: 11 EIV-FVGRSNVGKSTLVRELTG 31


>gnl|CDD|163405 TIGR03693, ocin_ThiF_like, putative thiazole-containing bacteriocin
           maturation protein.  Members of this protein family are
           found in a three-gene operon in Bacillus anthracis and
           related Bacillus species, where the other two genes are
           clearly identified with maturation of a putative
           thiazole-containing bacteriocin precursor. While there
           is no detectable pairwise sequence similarity between
           members of this family and the proposed
           cyclodehydratases such as SagC of Streptococcus pyogenes
           (see family TIGR03603), both families show similarity
           through PSI-BLAST to ThiF, a protein involved in
           biosynthesis of the thiazole moiety for thiamine
           biosynthesis. This family, therefore, may contribute to
           cyclodehydratase function in heterocycle-containing
           bacteriocin biosyntheses. In Bacillus licheniformis ATCC
           14580, the bacteriocin precursor gene is adjacent to the
           gene for this protein.
          Length = 637

 Score = 28.8 bits (64), Expect = 3.2
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 273 PGSGIGIFLRHVSTNL------LSGLIEAVMAPPYNGKADLPDLANSLQLE-ADRLFHIG 325
           P    G + R+ + +       ++   E ++ P +NG+  L D+ + L      R+F IG
Sbjct: 20  PDPNGGAYFRNNAGSFRLDGDGIANWFEKLL-PMFNGEHSLADITDGLPAPYQKRVFEIG 78

Query: 326 ESL 328
           E L
Sbjct: 79  EIL 81


>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
           Provisional.
          Length = 407

 Score = 28.5 bits (63), Expect = 3.3
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 26  ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
           +SG L V D  +F++S+  I+ L+G++G GK+T L
Sbjct: 191 LSGKLAVED--SFDLSNHRIISLIGQTGVGKTTTL 223


>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
           VirB4 family.  Type IV secretion systems are found in
           Gram-negative pathogens. They export proteins, DNA, or
           complexes in different systems and are related to
           plasmid conjugation systems. This model represents
           related ATPases that include VirB4 in Agrobacterium
           tumefaciens (DNA export) CagE in Helicobacter pylori
           (protein export) and plasmid TraB (conjugation).
          Length = 785

 Score = 28.4 bits (64), Expect = 3.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 37  NFNVSSGEIVG---LLGRSGSGKSTLLRIIA 64
           NF+V   +++G   + G +GSGK+TLL  + 
Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLL 455


>gnl|CDD|163595 TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420
           biosynthesis associated.  protein whose crystal
           structure has been determined (PDB:3CMN_A). This has
           been annotated as a putative hydrolase, but the support
           for that assertion is untraceable. There is no cofactor
           present in the structure.
          Length = 346

 Score = 28.5 bits (64), Expect = 3.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 370 VPLVNLIRRVLDERRLHSAPAARF 393
           VP V  IR   D+RR    P  R 
Sbjct: 263 VPSVADIRARFDQRRRGRGPLDRL 286


>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
           Members of this protein family are the FliI protein of
           bacterial flagellum systems. This protein acts to drive
           protein export for flagellar biosynthesis. The most
           closely related family is the YscN family of bacterial
           type III secretion systems. This model represents one
           (of three) segment of the FliI family tree. These have
           been modeled separately in order to exclude the type III
           secretion ATPases more effectively.
          Length = 413

 Score = 28.4 bits (64), Expect = 3.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 43  GEIVGLLGRSGSGKSTLLRIIA 64
           G+ VG+   SG GKSTLL +IA
Sbjct: 137 GQRVGIFAGSGVGKSTLLGMIA 158


>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed.
          Length = 335

 Score = 28.1 bits (64), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 46  VGLLGRSGSGKSTLLRII 63
           VGL+G   +GKSTL+  +
Sbjct: 161 VGLVGLPNAGKSTLISAV 178


>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family.  This family of
           ATPases demonstrates extensive homology with ATP
           synthase F1, beta subunit. It is a mixture of members
           with two different protein functions. The first group is
           exemplified by Salmonella typhimurium FliI protein. It
           is needed for flagellar assembly, its ATPase activity is
           required for flagellation, and it may be involved in a
           specialized protein export pathway that proceeds without
           signal peptide cleavage. The second group of proteins
           function in the export of virulence proteins;
           exemplified by Yersinia sp. YscN protein an ATPase
           involved in the type III secretory pathway for the
           antihost Yops proteins.
          Length = 440

 Score = 28.1 bits (63), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 38  FNVSSGEIVGLLGRSGSGKSTLLRIIA 64
             V  G+ +G+   SG GKSTLL +IA
Sbjct: 158 LTVGKGQRIGIFAGSGVGKSTLLGMIA 184


>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed.
          Length = 390

 Score = 27.9 bits (63), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 46  VGLLGRSGSGKSTLLRII 63
           VGLLG   +GKST +R +
Sbjct: 162 VGLLGLPNAGKSTFIRAV 179


>gnl|CDD|161782 TIGR00235, udk, uridine kinase.  Model contains a number of
          longer eukaryotic proteins and starts bringing in
          phosphoribulokinase hits at scores of 160 and below.
          Length = 207

 Score = 28.1 bits (63), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVS 68
           G I+G+ G SGSGK+T+ R I   + 
Sbjct: 5  KGIIIGIGGGSGSGKTTVARKIYEQLG 31


>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
          Length = 208

 Score = 28.1 bits (63), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66
          +VG+ G  GSGKST+ R +A +
Sbjct: 7  LVGVTGGIGSGKSTVCRFLAEM 28


>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA.  This model describes
           a univeral, mostly one-gene-per-genome GTP-binding
           protein that associates with ribosomal subunits and
           appears to play a role in ribosomal RNA maturation. This
           GTPase, related to the nucleolar protein Obg, is
           designated CgtA in bacteria. Mutations in this gene are
           pleiotropic, but it appears that effects on cellular
           functions such as chromosome partition may be secondary
           to the effect on ribosome structure. Recent work done in
           Vibrio cholerae shows an essential role in the stringent
           response, in which RelA-dependent ability to synthesize
           the alarmone ppGpp is required for deletion of this
           GTPase to be lethal.
          Length = 329

 Score = 27.8 bits (63), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 46  VGLLGRSGSGKSTLLRII 63
           VGL+G   +GKSTL+  +
Sbjct: 160 VGLVGLPNAGKSTLISAV 177


>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
           H+-transporting two-sector ATPase. 
          Length = 422

 Score = 27.7 bits (62), Expect = 5.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 43  GEIVGLLGRSGSGKSTLLRIIA 64
           G+ +G+   +G GKSTLL +IA
Sbjct: 145 GQRIGIFAGAGVGKSTLLGMIA 166


>gnl|CDD|178848 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
          Length = 197

 Score = 27.8 bits (63), Expect = 6.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66
          I+GL G  GSGKST+  + A L
Sbjct: 4  IIGLTGGIGSGKSTVANLFAEL 25


>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain.  This
          model recognizes a large number of small GTP-binding
          proteins and related domains in larger proteins. Note
          that the alpha chains of heterotrimeric G proteins are
          larger proteins in which the NKXD motif is separated
          from the GxxxxGK[ST] motif (P-loop) by a long insert
          and are not easily detected by this model.
          Length = 161

 Score = 27.7 bits (62), Expect = 6.3
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 11/48 (22%)

Query: 46 VGLLGRSGSGKSTLLRIIAGLVSPSS-----------GQVLFKGKKIK 82
          + ++G    GKSTLL  + G    +              +   GK  K
Sbjct: 4  IVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYK 51


>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
          Length = 172

 Score = 27.8 bits (62), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 50 GRSGSGKSTLLRIIAG 65
          GRSGSGK+TL   +A 
Sbjct: 22 GRSGSGKTTLAGALAA 37


>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
          Length = 288

 Score = 27.4 bits (62), Expect = 7.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 50 GRSGSGKSTLLR 61
          G SG+GKS  LR
Sbjct: 13 GLSGAGKSVALR 24


>gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
          Length = 567

 Score = 27.5 bits (62), Expect = 7.4
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 15/54 (27%)

Query: 226 GRIAEEVLISIPHPRNRLSPE-FRQIVEKIYALMT------KKEEKRLNPLENA 272
             + EEV        N LS E  R+ +E++   +       K+E+K L PL NA
Sbjct: 52  KEVVEEV--------NSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNA 97


>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
          Length = 943

 Score = 27.3 bits (62), Expect = 8.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 382 ERRLHSAPAARFRNELEDYMSE 403
           ERR     +   R ELE YMSE
Sbjct: 385 ERRYRETESEYVREELEKYMSE 406


>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
          Length = 432

 Score = 27.2 bits (60), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 13  EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
           EI D+ ++  +K I   L         +  G+ +G+   SG GKSTLL +IA
Sbjct: 135 EITDVFET-GIKSIDSML--------TIGIGQKIGIFAGSGVGKSTLLGMIA 177


>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
          domain-containing protein; Provisional.
          Length = 395

 Score = 27.3 bits (61), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 46 VGLLGRSGSGKSTLLRIIAGL 66
          +GL G  G+GKST+   +A L
Sbjct: 4  IGLTGGIGAGKSTVAARLAEL 24


>gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
          Length = 460

 Score = 27.1 bits (61), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 22 SLKKISGNLLVLDKVNFNVSSGEIV 46
          ++ +I G LL ++ V   V+ GEIV
Sbjct: 6  TVSEIKGPLLFVEGVE-GVAYGEIV 29


>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
          utilisation.  Members of this family function in
          ethanolamine and propanediol degradation pathways,
          however the exact roles of these proteins is poorly
          understood.
          Length = 143

 Score = 27.2 bits (61), Expect = 9.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 48 LLGRSGSGKSTLLRIIAGL 66
          L+GRSG GK+TL + + G 
Sbjct: 6  LIGRSGCGKTTLTQALNGE 24


>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
          Length = 298

 Score = 27.1 bits (61), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 48  LLGRSGSGKSTLLRIIAG 65
           L G+SG GKSTLL  +A 
Sbjct: 169 LAGQSGVGKSTLLNALAP 186


>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
          Length = 818

 Score = 27.1 bits (60), Expect = 9.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 48  LLGRSGSGKSTLLRIIA 64
           + G +GSGKSTLL +IA
Sbjct: 461 IFGPTGSGKSTLLALIA 477


>gnl|CDD|150244 pfam09502, HrpB4, Bacterial type III secretion protein (HrpB4).
           This entry represents proteins encoded by genes which
           are found in type III secretion operons in a narrow
           range of species including Xanthomonas, Burkholderia and
           Ralstonia.
          Length = 215

 Score = 27.1 bits (60), Expect = 9.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
           G L RV  A +    PSL  +DEP + L VL A +L   L 
Sbjct: 51  GALSRVIQAWSGGPSPSLGALDEPANRLAVLPAADLLRVLR 91


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,382,168
Number of extensions: 503258
Number of successful extensions: 1975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 332
Length of query: 438
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 342
Effective length of database: 3,920,105
Effective search space: 1340675910
Effective search space used: 1340675910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)