RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (438 letters) >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 205 bits (523), Expect = 2e-53 Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 22/244 (9%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 L I +I + F G L ++ +V GE V LLG SG GK+TLLRIIAGL ++ Sbjct: 5 LSIDNIRKRF------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA 58 Query: 72 GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 G + G+ I PP+ D +VFQ++ALFP LTV +N+ GLK +G+ + E +R Sbjct: 59 GTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAEL 118 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 +DL+GL G E + ++SGG QRV ARA P LLL+DEP SALD E+LRT++ Sbjct: 119 LDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR 178 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRL 243 L + RL + ++ MVTH+ EEA+ M DR++V N G I + + P HP Sbjct: 179 QL--QRRLGVTTI-MVTHDQEEALSMADRIVVM--NHGVIEQ---VGTPQEIYRHPATPF 230 Query: 244 SPEF 247 +F Sbjct: 231 VADF 234 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 203 bits (519), Expect = 6e-53 Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 14/218 (6%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 L+ +N + SGE++ +LG SG GK+TLL +IAG V G + GK ++ P + VV Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75 Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151 FQ L PW V +NV GL+ G++K +R + A + +GL+G E + ++SGG Q Sbjct: 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ 135 Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 RVG ARA P LLL+DEPF ALD T E ++T L+ LW E + L++TH+IEEA Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV---LLITHDIEEA 192 Query: 212 VLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQ 249 V M +++ S PGR+ E RL F + Sbjct: 193 VFMATELVLLSPGPGRVVE-----------RLPLNFAR 219 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 196 bits (499), Expect = 1e-50 Identities = 94/214 (43%), Positives = 135/214 (63%), Gaps = 6/214 (2%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 L VN + GE + L+G SG GKSTLL +I+GL P+SG V+ +GK+I +P D VVF Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60 Query: 93 QTFALFPWLTVLENVELGLKA--KGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150 Q ++L PWLTV EN+ L + + K ERR I L+GL ++SGGM Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120 Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEE 210 QRV ARA + P +LL+DEPF ALD LT NL+ +L+ +W E R+ ++LMVTH+++E Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV---TVLMVTHDVDE 177 Query: 211 AVLMCDRVLVFSSNPG-RIAEEVLISIPHPRNRL 243 A+L+ DRV++ ++ P I + + + P PR+RL Sbjct: 178 ALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRL 211 >gnl|CDD|150485 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit. Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulfonate and bicarbonate translocation. Length = 120 Score = 176 bits (449), Expect = 8e-45 Identities = 72/120 (60%), Positives = 83/120 (69%) Query: 308 PDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKKLFAKQLL 367 P LA+ LQL+ D LF I E+ +LL L GGDI LT G RFA D D RK+LFA+QLL Sbjct: 1 PQLADELQLDIDDLFPIVEAAELLGFAELEGGDIELTPLGRRFAEADIDERKELFAEQLL 60 Query: 368 QHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYAELFSYDE 427 HVPL IRRVLDER H AP RF +ELEDY+S E A+ T+ T + WGRYAELF YDE Sbjct: 61 AHVPLAAHIRRVLDERPSHRAPEERFLDELEDYLSPEEAERTLRTAIDWGRYAELFEYDE 120 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 174 bits (442), Expect = 5e-44 Identities = 87/223 (39%), Positives = 133/223 (59%), Gaps = 14/223 (6%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 + +++I + F G+ V+D +N + G +V LLG SG GK+T+LR++AGL Sbjct: 4 KNFVVLKNITKRF------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 Query: 69 PSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 P+ GQ+ G+ + +DI +VFQ++ALFP +++ ENV GLK G+ KEER++R Sbjct: 58 PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV 117 Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185 A++L+ L GFE + +ISGG QRV ARA ++ P +LL DEP S LD ++R Sbjct: 118 KEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177 Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 + +L + + I S L VTH+ EA + D V+V N G+I Sbjct: 178 KIREL--QQQFNITS-LYVTHDQSEAFAVSDTVIVM--NKGKI 215 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 173 bits (441), Expect = 7e-44 Identities = 87/268 (32%), Positives = 147/268 (54%), Gaps = 24/268 (8%) Query: 25 KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP 84 K +G ++ + ++ GEI ++G SGSGKST +R++ L+ P++GQ+ G+ I Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60 Query: 85 PKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135 I +VFQ FALFP +T+L+N LG + G ++ER+++AL + L+GL+ Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 +E + E+SGGM QRVG ARA P +LLMDE FSALD L ++++ +L L Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL---QA 177 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRLSPEFRQI 250 ++++ +TH+++EA+ + DR+++ + E V + P +P N EF Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKA-----GEIVQVGTPDEILRNPANEYVEEFIGK 232 Query: 251 VEKIYALMTKKEEKRLN--PLENAPGSG 276 V+ ++ +R+N P+ G Sbjct: 233 VDLSQVFDAERIAQRMNTGPITKTADKG 260 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 170 bits (433), Expect = 6e-43 Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 18/215 (8%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-GKKIKDP- 84 +G ++ + + ++ GEI L+G SGSGKS+LLR + GL S G VL K G D Sbjct: 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVA 93 Query: 85 -----------PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133 +S+VFQ FAL PWLTV ENV GL+ +G+ + ERRKR ++L+G Sbjct: 94 NCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVG 153 Query: 134 LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193 L + E+SGGM QRVG ARAF + +LLMDEPFSALD L L+ +L++L + Sbjct: 154 LAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLEL--Q 211 Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 +L ++++ V+H+++EA+ + +R+ + GRI Sbjct: 212 AKLN-KTIIFVSHDLDEALKIGNRIAIMEG--GRI 243 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 168 bits (427), Expect = 2e-42 Identities = 96/244 (39%), Positives = 136/244 (55%), Gaps = 22/244 (9%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +EI +I + F G+ LD VN V +G +V LLG SGSGKSTLLRIIAGL P S Sbjct: 1 IEIANISKRF------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS 54 Query: 72 GQVLFKGKKI-KDPPKD--ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 G++ G+ + +D I VFQ +ALF LTV +N+ GL+ + K + + R Sbjct: 55 GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL 114 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 ++L+ L+G + ++SGG QRV ARA V P +LL+DEPF ALD + LR+ L Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRL 243 L E + + + VTH+ EEA+ + DR++V S+ G+I +EV HP N Sbjct: 175 KLHDEVHV---TTVFVTHDQEEAMEVADRIVVMSN--GKIEQIGSPDEVY---DHPANPF 226 Query: 244 SPEF 247 F Sbjct: 227 VMSF 230 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 160 bits (406), Expect = 7e-40 Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 16/208 (7%) Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVL 104 LLG SG GK+TLLR++AG P SG ++ G+ + + P + I++VFQ++ALFP +TV Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60 Query: 105 ENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPS 164 ENV GLK + + + E + R L A+ L+ L+ F ++SGG QRV ARA V P Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120 Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 +LL+DEP SALD + ++ +L I+ +L I + + VTH+ EEA+ M DR+ + Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKT--IQEQLGI-TFVFVTHDQEEAMTMSDRIAIMRK- 176 Query: 225 PGRIAEEVLISIP-----HPRNRLSPEF 247 G+IA+ I P P N F Sbjct: 177 -GKIAQ---IGTPEEIYEEPANLFVARF 200 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 160 bits (406), Expect = 8e-40 Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 15/233 (6%) Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 + L+E++ I +SF K++ + ++ +++GE + LLG SG GK+T+L Sbjct: 5 NKQPSSLSP-LVELRGISKSFDGKEV------ISNLDLTINNGEFLTLLGPSGCGKTTVL 57 Query: 61 RIIAGLVSPSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGID 117 R+IAG +P SG+++ G+ I P + ++ VFQ++ALFP +TV ENV GL+ + Sbjct: 58 RLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP 117 Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 E R + A+ ++ L+ F ++SGG QRV ARA V P +LL+DE SALD Sbjct: 118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177 Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 + ++ +L L + +L I + + VTH+ EEA+ M DR++V GRI + Sbjct: 178 KLRKQMQNELKAL--QRKLGI-TFVFVTHDQEEALTMSDRIVVM--RDGRIEQ 225 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 154 bits (392), Expect = 3e-38 Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 13/225 (5%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 ++ K G VL++++ ++ +G+ V ++GRSG GKSTLLR++AGL +PS+G++L + Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL 76 Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141 + +D ++FQ L PW V++NV LGLK + R AL A+ +GL + Sbjct: 77 AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW------RDAALQALAAVGLADRANEW 130 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID-LWIEGRLPIES 200 +SGG QRV ARA + P LLL+DEP ALD LT ++ DLI+ LW + + Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGF---T 186 Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSP 245 +L+VTH++ EAV M DRVL+ G+I ++ + +P PR R S Sbjct: 187 VLLVTHDVSEAVAMADRVLLIEE--GKIGLDLTVDLPRPRRRGSA 229 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 150 bits (380), Expect = 8e-37 Identities = 105/255 (41%), Positives = 139/255 (54%), Gaps = 28/255 (10%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E +++ + F G VL ++ N+ GE+V ++G SGSGKSTLLR I L + Sbjct: 1 MIEFKNVSKHF------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54 Query: 71 SGQVLFKGKKIKDPPKDI-------SVVFQTFALFPWLTVLENVELG-LKAKGIDKEERR 122 SG ++ G K+ DP D +VFQ F LFP LT LENV G L+ +G KEE Sbjct: 55 SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE 114 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE 181 K+A + +GL + +E+SGG QRV ARA V P L+L DEP SALD L E Sbjct: 115 KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIP 237 L+ + DL EG +M++VTH I A + R L+F GRIAE +VLI P Sbjct: 175 VLKV-MQDLAEEGM----TMVIVTHEIGFAEKVASR-LIFIDK-GRIAEDGDPQVLIKNP 227 Query: 238 HPRNRLSPEFRQIVE 252 P RL EF Q V Sbjct: 228 -PSQRLQ-EFLQHVS 240 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 149 bits (378), Expect = 1e-36 Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 11/233 (4%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFKGK 79 L+ G VLD ++ + +GE++ L+G+SG GK+TLLR IAG V + +G++ + Sbjct: 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69 Query: 80 KIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136 + P + ++++FQ +ALFP L V +NV GL+A+ + K + +R A+ L+GL Sbjct: 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD 129 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 + ++SGGM QR+ ARA + P +LL+DEP SALD N+R ++ L L Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL--HEEL 187 Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE--EVLISIPHPRNRLSPEF 247 P ++L VTH+ ++A+ + D+ + GR+A E P + + EF Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKD--GRLAAHGEPQALYDAPADGFAAEF 238 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 149 bits (379), Expect = 1e-36 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 20/220 (9%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +EI +I +SF G VL+ ++ ++ SG++V LLG SGSGK+TLLRIIAGL +S Sbjct: 3 IEIANIKKSF------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS 56 Query: 72 GQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKA----KGIDKEERR 122 G + F G + +D + + VFQ +ALF +TV +N+ GL + + + Sbjct: 57 GHIRFHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK 114 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 + ++++ L + ++SGG QRV ARA V P +LL+DEPF ALD + Sbjct: 115 AKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 LR L L E L S+ VTH+ EEA+ + DRV+V S Sbjct: 175 LRRWLRQLHEE--LKFTSVF-VTHDQEEAMEVADRVVVMS 211 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 149 bits (377), Expect = 2e-36 Identities = 91/245 (37%), Positives = 136/245 (55%), Gaps = 22/245 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLEI+++ +SF G V D V+ + GEI LLG SG GKSTLLR++AG P+ Sbjct: 19 LLEIRNLTKSFD-----GQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT 72 Query: 71 SGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127 +GQ++ G + P + I+++FQ++ALFP +TV +N+ GLK + K E R Sbjct: 73 AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNE 132 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 + L+ + F ++SGG QRV AR+ P LLL+DEP ALD + ++ ++ Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNR 242 +D I R+ + + +MVTH+ EEA+ M R+ + N G+ V I P HP R Sbjct: 193 VD--ILERVGV-TCVMVTHDQEEAMTMAGRIAIM--NRGKF---VQIGEPEEIYEHPTTR 244 Query: 243 LSPEF 247 S EF Sbjct: 245 YSAEF 249 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 144 bits (363), Expect = 7e-35 Identities = 80/206 (38%), Positives = 130/206 (63%), Gaps = 12/206 (5%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---KKIKD 83 +G L + + + GEI ++G SGSGKST++R++ L+ P+ GQVL G KI D Sbjct: 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISD 97 Query: 84 PP------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 K I++VFQ+FAL P +TVL+N G++ GI+ EERR++AL A+ +GL+ + Sbjct: 98 AELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY 157 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 ++ E+SGGM QRVG ARA + P +LLMDE FSALD L ++ +L+ L + + Sbjct: 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-- 215 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223 +++ ++H+++EA+ + DR+ + + Sbjct: 216 -RTIVFISHDLDEAMRIGDRIAIMQN 240 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 142 bits (361), Expect = 1e-34 Identities = 83/236 (35%), Positives = 121/236 (51%), Gaps = 26/236 (11%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------- 76 K L +N N++ GE V ++G SG+GKSTLLR I LV PSSG +L Sbjct: 9 KVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68 Query: 77 -KGKKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAK-------GIDKEERRKRALS 127 +GKK++ + I ++FQ + L LTVLENV G L K G EE ++RALS Sbjct: 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALS 128 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 A++ +GL ++SGG QRV ARA P L+L DEP ++LD T++ + L Sbjct: 129 ALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236 + E + + ++ H ++ A DR++ VF P + +EVL I Sbjct: 189 KRINKEDGITV---IINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI 241 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 139 bits (353), Expect = 1e-33 Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 14/206 (6%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 + K G+ ++LD +N + G++ ++G SGSGKSTLL II L SGQV GK+ Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63 Query: 83 DPPK---------DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133 + +FQ FAL TV EN++LGLK K + K+E+R++ A++ +G Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123 Query: 134 LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193 L+ E+SGG QRV ARA + P L+L DEP +LD + + L++L E Sbjct: 124 LNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183 Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVL 219 G+ +++VTH+ E A DRV+ Sbjct: 184 GKT----IIIVTHDPEVAK-QADRVI 204 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 138 bits (349), Expect = 3e-33 Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 22/233 (9%) Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 MA++ +++ + +++ IS + +N ++ GE V +G SG GKSTLL Sbjct: 1 MASVTLRN--------VTKAYGDVVISKD------INLDIHEGEFVVFVGPSGCGKSTLL 46 Query: 61 RIIAGLVSPSSGQVLFKGKKIKD-PPKDISV--VFQTFALFPWLTVLENVELGLKAKGID 117 R+IAGL +SG + K++ D PP + V VFQ++AL+P L+V EN+ GLK G Sbjct: 47 RMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106 Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 KEE +R +++ L +SGG QRV R V PS+ L+DEP S LD Sbjct: 107 KEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166 Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 +R ++ L RL +M+ VTH+ EA+ + D+++V + GR+A+ Sbjct: 167 ALRVQMRIEISRL--HKRLG-RTMIYVTHDQVEAMTLADKIVVL--DAGRVAQ 214 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 137 bits (348), Expect = 5e-33 Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 37/239 (15%) Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 MA + ++ R K G V+ ++ +V+ GE + L+G SG GKSTLL Sbjct: 1 MAGLKLQAVR-------------KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL 47 Query: 61 RIIAGLVSPSSGQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGID 117 R++AGL +SG++ G+ + + P DI++VFQ +AL+P ++V EN+ GLK +G+ Sbjct: 48 RMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP 107 Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 K E +R A ++ L+ E+SGG QRV RA V P++ L DEP S LD Sbjct: 108 KAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167 Query: 178 LTAENLRTDLIDLWIEGRLPIESM--------LMVTHNIEEAVLMCDRVLVFSSNPGRI 228 LR ++ RL I+ + L VTH+ EA+ + DRV+V N G Sbjct: 168 ----KLR-------VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM--NGGVA 213 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 136 bits (344), Expect = 1e-32 Identities = 84/248 (33%), Positives = 133/248 (53%), Gaps = 23/248 (9%) Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72 E+++I + F + L+ V+ ++ +GEI G++G SG+GKSTL+R I L P+SG Sbjct: 3 ELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60 Query: 73 QVLFKGK---KIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124 +VL G+ + + + I ++FQ F L TV +NV L L+ G K E + R Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR 120 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 ++L+GL + ++SGG QRV ARA P +LL DE SALD T Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT----- 175 Query: 185 TDLI-DLW--IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLIS--IPHP 239 T I +L I L + +++++TH ++ +CDRV V + GR+ E+ +S HP Sbjct: 176 TRSILELLKDINRELGL-TIVLITHEMDVVKRICDRVAVIDA--GRLVEQGTVSEVFSHP 232 Query: 240 RNRLSPEF 247 ++ L+ EF Sbjct: 233 KHPLTREF 240 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 134 bits (338), Expect = 6e-32 Identities = 84/223 (37%), Positives = 115/223 (51%), Gaps = 24/223 (10%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF--------KGK 79 G L VLD +NF+V++GE V L+G SGSGKST+LRI+ L GQ+ G+ Sbjct: 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGR 70 Query: 80 KIKDPPKD----------ISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSA 128 P D I +VFQ+F LFP TVL+NV + G+ + E KRA+ Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 +D++GL ++SGG QRV ARA + P ++L DE SALD + + Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 L E L +ML+VTH + A DRV F + GRI E+ Sbjct: 191 RLASEHDL---TMLLVTHEMGFAREFADRVCFF--DKGRIVEQ 228 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 128 bits (323), Expect = 3e-30 Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 14/195 (7%) Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG-------KKIKDPP-- 85 +F + + + GRSGSGK+TL+R+IAGL P G+++ G K I PP Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145 + I VFQ LFP L+V N+ G+K ERR I+L+G+ + Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKR--ARPSERRISFERVIELLGIGHLLGRLPGRL 132 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGG QRV RA + P LLLMDEP +ALD + L L E +P +L V+ Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP---ILYVS 189 Query: 206 HNIEEAVLMCDRVLV 220 H+++E + + DRV+V Sbjct: 190 HSLQEVLRLADRVVV 204 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 126 bits (319), Expect = 1e-29 Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 10/211 (4%) Query: 25 KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KD 83 K+ G+ +D VNF V GE+ G LG +G+GK+T +R++ L+ P+SG G + ++ Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60 Query: 84 PPK---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140 P K I +V Q ++ LT EN+E+ + G+ K+E +RA ++L L Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 SGGM +R+ A + + P +L +DEP + LD T + D I E + I Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEGVTI-- 177 Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 L+ TH +EEA +CDR+ + + GRI E Sbjct: 178 -LLTTHYMEEADKLCDRIAII--DHGRIIAE 205 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 125 bits (316), Expect = 2e-29 Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 21/251 (8%) Query: 11 LLEIQDICQSF--SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 ++++ +I + F K I L+ V+ +V +G+I G++G SG+GKSTL+R + L Sbjct: 1 MIKLSNITKVFHQGTKTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 56 Query: 69 PSSGQVLFKGK---KIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120 P+SG V+ G+ + + + I ++FQ F L TV NV L L+ K+E Sbjct: 57 PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE 116 Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 +++ + L+GL ++ + +SGG QRV ARA P +LL DE SALD T Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLIS--IPH 238 +++ L + I RL + ++L++TH ++ +CD V V S+ G + E+ +S H Sbjct: 177 QSILELLKE--INRRLGL-TILLITHEMDVVKRICDCVAVISN--GELIEQGTVSEIFSH 231 Query: 239 PRNRLSPEFRQ 249 P+ L+ +F + Sbjct: 232 PKTPLAQKFIR 242 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 125 bits (316), Expect = 2e-29 Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 12/204 (5%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI----- 81 G+ LD +NF+++ GE+V L+G SG+GKST L++I G+ P+ G++ F G+ + Sbjct: 13 GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG 72 Query: 82 KDPPK---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 ++ P I +VFQ L TV +NV L+ G+ + +R +A++ +GL+G Sbjct: 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 A ++SGG QRV ARA V P LLL DEP LD + D++ L+ E Sbjct: 133 HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR----DIMRLFEEFNRRG 188 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFS 222 ++L+ TH+I R L S Sbjct: 189 TTVLVATHDINLVETYRHRTLTLS 212 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 123 bits (311), Expect = 8e-29 Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 15/219 (6%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL+ +++ + + K+ VL V+ ++ GEIV ++G SGSGKSTLL ++ GL +P+ Sbjct: 1 LLKCENLGKRYQEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58 Query: 71 SGQVLFKGKKI---------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121 SG+VLF G+ + K K + ++Q L P T LENV + L +E Sbjct: 59 SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA 118 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 ++RA ++ +GL+ + +E+SGG QRV ARA V PSL+L DEP LD A+ Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + +++L E S L+VTH++E A + DRVL Sbjct: 179 IIFDLMLELNRELNT---SFLVVTHDLELAKKL-DRVLE 213 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 123 bits (309), Expect = 1e-28 Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 8/196 (4%) Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-IKDPP--KDISVVFQ 93 + NV+ GEIV ++G SG+GKSTLL +IAG + P+SG + + P + +S++FQ Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 Query: 94 TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRV 153 LF LTV +N+ LGL E++++ + A +G+ + ++SGG QRV Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137 Query: 154 GFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVL 213 AR V +LL+DEPFSALD L E + + L E + ++LMVTH++ +A Sbjct: 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR---TLLMVTHHLSDARA 194 Query: 214 MCDRVLVFSSNPGRIA 229 + ++ V S G+I Sbjct: 195 IASQIAVVSQ--GKIK 208 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 119 bits (300), Expect = 1e-27 Identities = 90/239 (37%), Positives = 123/239 (51%), Gaps = 28/239 (11%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL-------- 75 KK G VL ++ V GE+V ++G SGSGK+TLLR I L P +G + Sbjct: 11 KKFHGQT-VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69 Query: 76 ---FKGKK--IKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAI 129 +K I+ + + VFQ F LFP TVLEN+ G + KG KEE RA + Sbjct: 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL 129 Query: 130 DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDLI 188 +GL G E+++ +SGG QRV ARA + P ++L DEP SALD L E L T + Sbjct: 130 AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IR 188 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE----VLISIP-HPRNR 242 L E R +M++VTH + A + DR + + GRI E+ L + P PR R Sbjct: 189 QLAQEKR----TMVIVTHEMSFARDVADRAIFM--DQGRIVEQGPAKALFADPQQPRTR 241 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 119 bits (299), Expect = 2e-27 Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 24/252 (9%) Query: 11 LLEIQDIC---QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 LLE++D+ ++ L VL V+ ++ GE VGLLGRSG GKSTL R++ GL Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 Query: 68 SPSSGQVLFKG--------KKIKDPPKDISVVFQTF--ALFPWLTVLENVELGLK-AKGI 116 P+ G V F+G K+ + +D+ +VFQ A+ P +TV + + L+ + Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL 121 Query: 117 DKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 D+ E++ R +D++GL ++SGG LQR+ ARA V P L+++DE S L Sbjct: 122 DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV--- 232 D++ + L L + L +TH++ C RV V G+I EE Sbjct: 182 DMVLQAVILELLRKLQQAFGT---AYLFITHDLRLVQSFCQRVAVMDK--GQIVEECDVA 236 Query: 233 -LISIPHPRNRL 243 L+S HP R Sbjct: 237 QLLSFKHPAGRN 248 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 118 bits (299), Expect = 2e-27 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 16/202 (7%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-- 85 G + L V+ ++ GE + L G SG+GK+TLL+++ G ++PS GQV G+ + Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72 Query: 86 ------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 + I VVFQ F L P TV ENV L L+ +G + E ++R +A+ +GL+ Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HK 130 Query: 140 AHTT--EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 A ++SGG QRV ARA V P LLL DEP LD +E + L L G Sbjct: 131 ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG--- 187 Query: 198 IESMLMVTHNIEEAVLMCDRVL 219 ++++ TH++ + RV+ Sbjct: 188 -TTVIVATHDLSLVDRVAHRVI 208 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 118 bits (299), Expect = 3e-27 Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 29/240 (12%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +LE +++ G +LD V+ + GE+V +LG +G+GKSTLLR ++G +SP Sbjct: 2 MLEARNLSVRL------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD 55 Query: 71 SGQVLFKGKKIKD-PPKDIS----VVFQTFAL-FPWLTVLENVELGLKAKGIDKEERRKR 124 SG+V G+ + D P +++ V+ Q +L FP+ TV E V +G G+ + E Sbjct: 56 SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL 114 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFV------VFPSLLLMDEPFSALDVL 178 +A+ + L ++SGG QRV AR P LL+DEP SALD+ Sbjct: 115 VAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVL 233 ++ L E L ++++V H++ A DR+++ GR+ EVL Sbjct: 175 HQHHVLRLARQLAHERGL---AVIVVLHDLNLAARYADRIVLLHQ--GRLVADGTPAEVL 229 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 118 bits (298), Expect = 3e-27 Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 12/198 (6%) Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-IKDPP--KDISVVFQ 93 + V GE V +LG SG+GKSTLL +IAG ++P+SG + G+ PP + +S++FQ Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 Query: 94 TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGLDGFESAHTTEISGGMLQR 152 LF LTV +N+ LGL G+ ++ L AI +G++ + ++SGG QR Sbjct: 79 ENNLFSHLTVAQNIGLGL-NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR 137 Query: 153 VGFARAFVVFPSLLLMDEPFSALD-VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 V AR V +LL+DEPFSALD L E L T + + E +L ++LMV+H++E+A Sbjct: 138 VALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQVCQERQL---TLLMVSHSLEDA 193 Query: 212 VLMCDRVLVFSSNPGRIA 229 + R LV + GRIA Sbjct: 194 ARIAPRSLVVAD--GRIA 209 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 117 bits (295), Expect = 7e-27 Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 33/214 (15%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP---K 86 LD V+ + GE V ++GR GSGKSTLL+++ GL P+ G VL G I+ DP + Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT--- 143 +I V Q LF + T+ +N+ LG A D EE L A +L G+ F H Sbjct: 540 NIGYVPQDPRLF-YGTLRDNIALG--APYADDEE----ILRAAELAGVTEFVRRHPDGLD 592 Query: 144 --------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 +SGG Q V ARA + P +LL+DEP SA+D + E + L W+ G+ Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR-WLAGK 651 Query: 196 LPIESMLMVTHNIEEAVL-MCDRVLVFSSNPGRI 228 ++++VTH ++L + DR++V + GRI Sbjct: 652 ----TLVLVTHRT--SLLDLVDRIIVMDN--GRI 677 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 115 bits (290), Expect = 2e-26 Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 25/243 (10%) Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78 L + VL+ V+ ++ SGE V LLGRSG GKSTL R++ GL SPS G V ++G Sbjct: 14 AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73 Query: 79 KKI--------KDPPKDISVVFQTF--ALFPWLTVLENVELGLK-AKGIDKEERRKRALS 127 + + K +DI +VFQ A+ P TV E + L+ +DK ER RA Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE 133 Query: 128 AIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 + + LD ++SGG LQRV ARA V P LL++DE S LD++ L+ Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV----LQAG 189 Query: 187 LIDLW--IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV----LISIPHPR 240 +I L ++ + + L +TH++ C RV+V + G+I E ++ P Sbjct: 190 VIRLLKKLQQQFGT-ACLFITHDLRLVERFCQRVMVMDN--GQIVETQPVGDKLTFSSPA 246 Query: 241 NRL 243 R+ Sbjct: 247 GRV 249 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 114 bits (287), Expect = 5e-26 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL+ ++C+ + + + VL V+F++ GE++ ++G SGSGKSTLL ++ GL +P+ Sbjct: 5 LLQCDNLCKRYQEGSVQTD--VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62 Query: 71 SGQVLFKGK---------KIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121 SG V+F G+ K + + + ++Q L P T LENV + L E Sbjct: 63 SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEI 122 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 RAL + +GL+ + +E+SGG QRV ARA V P L+L DEP LD A+ Sbjct: 123 NSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 ++ L +L RL + L+VTH+++ A Sbjct: 183 SIFQLLGEL---NRLQGTAFLVVTHDLQLA 209 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 114 bits (287), Expect = 5e-26 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 15/172 (8%) Query: 20 SFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 S L I+ G L + + GE + LLG SG+GKS+LLR++ L P SG + Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61 Query: 77 KG-----------KKIKDPPKDISVVFQTFALFPWLTVLEN-VELGLKAKGIDKEERRKR 124 G K I++ +++ +VFQ + L+P LTV +N +E + G+ K++ R Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR 121 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 A ++ + L + +SGG QRV ARA ++ P +LL DEP +ALD Sbjct: 122 AEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 113 bits (285), Expect = 8e-26 Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 37/241 (15%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-- 68 +EI+++ + G L +N ++ ++ L+G SG GKSTLLR + + Sbjct: 1 AIEIENLNLFY------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 Query: 69 PS---SGQVLFKGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-D 117 P G+VLF G+ I D D + +VFQ FP +++ +N+ G + GI D Sbjct: 55 PGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKD 113 Query: 118 KEERRKRALSAIDLIGL--DGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173 K+E + ++ L + + H +SGG QR+ ARA V P +LL+DEP S Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173 Query: 174 ALD---VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 ALD E L +L + ++++VTHN+++A + DR F G + E Sbjct: 174 ALDPIATGKIEELIQELKKKY--------TIVIVTHNMQQAARISDRTAFFYD--GELVE 223 Query: 231 E 231 Sbjct: 224 Y 224 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 112 bits (281), Expect = 2e-25 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 18/188 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 VL +N ++ GEIV L G SGSGK+TLL +I GL S G + G+++ + Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 Query: 88 ----ISVVFQTFALFPWLTVLENVELGLK-AKGIDKEERRKRALSAIDLIGLDGFESAHT 142 I +FQ L +LT +NV++ L+ + +E R+RA + ++ +GL + Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE--- 199 +SGG QRV ARA V P L+L DEP +ALD + D+++L +L E Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR----DVVELM--QKLAREQGC 193 Query: 200 SMLMVTHN 207 ++L+VTH+ Sbjct: 194 TILIVTHD 201 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 111 bits (279), Expect = 4e-25 Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 22/217 (10%) Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFAL 97 + GE++GLLG +G+GK+TLLR I GL+ P+ G V G + I V Q Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHE- 59 Query: 98 FPW---LTVLENVELGLKAKGIDKEERRKRA-----LSAIDLIGLDGFESAHTTEISGGM 149 F W ++V V G + I R A A+ +GL E+SGG Sbjct: 60 FAWDFPISVAHTVMSG-RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQ 118 Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209 QRV ARA PS+LL+DEPF+ LD+ T E L I+L G ++LM TH++ Sbjct: 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG----TAILMTTHDLA 174 Query: 210 EAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE 246 +A+ CDRV++ + GR+ I+ P+ P Sbjct: 175 QAMATCDRVVLLN---GRV-----IADGTPQQLQDPA 203 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 110 bits (276), Expect = 1e-24 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 25/257 (9%) Query: 11 LLEIQDICQSFSLKKISGN--LLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 LLE++DI +S+ SG + VL ++ ++ +GE+V ++G SGSGKSTL+ I+ L Sbjct: 4 LLELKDIRRSYP----SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK 59 Query: 69 PSSGQVLFKGKKIKDPPKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE 119 P+SG G+ + D +FQ + L LT +NVE+ G++++ Sbjct: 60 PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK 119 Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 +R RA + +GL+ +++SGG QRV ARA + ++L DEP ALD + Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS-----SNPGRIAEEVLI 234 E + L L G ++++VTH+ + A +RV+ NP + + Sbjct: 180 GEEVMAILHQLRDRG----HTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKVNVA 234 Query: 235 SIPHPRNRLSPEFRQIV 251 P + +RQ V Sbjct: 235 GGTEPVVNTASGWRQFV 251 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 109 bits (274), Expect = 2e-24 Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 29/205 (14%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 L V+F V GE V L+G SG+GKSTLL ++ G V P+ G + G + D D Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA------ 140 I+ V Q LF T+ EN+ L D E RR A++ GLD F +A Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLARPD-ASDAEIRR-----ALERAGLDEFVAALPQGLD 449 Query: 141 -----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 +SGG QR+ ARAF+ LLL+DEP + LD T E L T+ + +GR Sbjct: 450 TLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET-EALVTEALRALAQGR 508 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220 ++L+VTH + A DR++V Sbjct: 509 ----TVLLVTHRLALAERA-DRIVV 528 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 108 bits (272), Expect = 2e-24 Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 28/230 (12%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI- 81 L K G VL V+ ++G+++ ++G SGSGKST LR I L PS G ++ G+ I Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70 Query: 82 --KDPPKDISV---------------VFQTFALFPWLTVLENV-ELGLKAKGIDKEERRK 123 +D + V VFQ F L+ +TVLENV E ++ G+ K+E R+ Sbjct: 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE 130 Query: 124 RALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE 181 RA+ + +G+D + + +SGG QRV ARA + P +LL DEP SALD L E Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 LR + L EG+ +M++VTH + A + V+ + G+I EE Sbjct: 191 VLRI-MQQLAEEGK----TMVVVTHEMGFARHVSSHVIFL--HQGKIEEE 233 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 107 bits (268), Expect = 8e-24 Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 20/192 (10%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 VL +NF GE++ LLG +G+GKSTLL + GL+ P SG VL G+ + K Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66 Query: 88 ---ISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 + +VFQ FA V ++V G G+ + E +R A+ +G G Sbjct: 67 RQRVGLVFQDPDDQLFA----ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE 122 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 T +SGG +RV A A + P +LL+DEP + LD E + L L EG Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM---- 178 Query: 200 SMLMVTHNIEEA 211 ++++ TH+++ A Sbjct: 179 TVVISTHDVDLA 190 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 106 bits (266), Expect = 1e-23 Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 13/199 (6%) Query: 30 LLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-------- 81 L +L V V GE + L+G SGSGKSTLL I+AGL SSG+V G+ + Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 Query: 82 -KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140 K K + VFQ+F L P L LENVEL +G + R A + ++ +GL Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH 142 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 ++SGG QRV ARAF P +L DEP LD T + + L L R + Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL---NREHGTT 199 Query: 201 MLMVTHNIEEAVLMCDRVL 219 +++VTH+++ A CDR L Sbjct: 200 LILVTHDLQLAA-RCDRRL 217 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 106 bits (266), Expect = 1e-23 Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 17/208 (8%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF-------KGKKIKDPP 85 LD VN + GE VGL+G +GSGKSTL++ + GL+ P+SG+++ K K+ D Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 Query: 86 KDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD--GFESAH 141 K + +VFQ + LF T+ +++ G G+ +EE R A++++GLD ++ Sbjct: 83 KKVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 E+SGG +RV A + P +L++DEP + LD + + + +L E + I Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI--- 198 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIA 229 ++V+H++E+ + DR++V N G+ Sbjct: 199 ILVSHSMEDVAKLADRIIVM--NKGKCE 224 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 105 bits (263), Expect = 3e-23 Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 12/184 (6%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP-- 85 L V F++ GE+ L G SG+GKSTLL++I G+ PS+G++ F G I ++ P Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77 Query: 86 -KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE 144 + I ++FQ L TV +NV + L G ++ R+R +A+D +GL + Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137 Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204 +SGG QRVG ARA V P++LL DEP LD + L ++ L+ E ++LM Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILRLFEEFNRVGVTVLMA 193 Query: 205 THNI 208 TH+I Sbjct: 194 THDI 197 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 105 bits (263), Expect = 3e-23 Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 22/212 (10%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 L +NF GE+V LLG +G+GKSTL G++ P+SG+VL KG+ IK K Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76 Query: 88 ---ISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 + +VFQ FA P TV E+V G G+ KEE KR A+ +G++GFE+ Sbjct: 77 RKTVGIVFQNPDDQLFA--P--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN 132 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 +SGG +RV A + P ++++DEP S LD + A + L DL EG I Sbjct: 133 KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIII 192 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 S TH+++ + D+V V S G+I +E Sbjct: 193 S----THDVDLVPVYADKVYVMSD--GKIIKE 218 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 104 bits (261), Expect = 5e-23 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 12/195 (6%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPKD 87 L+ V+F+V GE + ++G +GSGKST +R+I GL+ SGQ++ G + D Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 Query: 88 ISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146 I +VFQ F TV ++V GL+ KGI EE ++R A++L+G+ F+ +S Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLS 142 Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVT 205 GG QRV A A + P ++++DE S LD R +LI R + +++ +T Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLD----PEGRLELIKTIKGIRDDYQMTVISIT 198 Query: 206 HNIEEAVLMCDRVLV 220 H+++E V + DRVLV Sbjct: 199 HDLDE-VALSDRVLV 212 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 103 bits (258), Expect = 1e-22 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 15/178 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 L++++ + SF+ GN + D ++ V G+I ++G SG GK+TLLR+I G ++P Sbjct: 7 LVDMRGV--SFT----RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60 Query: 71 SGQVLFKGKKIK--------DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE-R 121 G++LF G+ I K +S++FQ+ ALF + V +NV L+ Sbjct: 61 HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL 120 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 + ++ +GL G +E+SGGM +R ARA + P L++ DEPF D +T Sbjct: 121 HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 102 bits (256), Expect = 2e-22 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE +++ + F G ++ ++ V + GLLG +G+GKSTLL++I G++ P+S Sbjct: 1 LETKNLSKRF------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS 54 Query: 72 GQVLFKGKK-IKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130 G+++F G + I + ++ L+ LT EN+++ G+ R ++ Sbjct: 55 GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS----RIDEVLN 110 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 ++ L + S GM QR+G A A + P LL++DEP + LD + + LR Sbjct: 111 IVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 102 bits (256), Expect = 2e-22 Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 19/217 (8%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 ++K G+ LV+D ++F+V GE GLLG +G+GK+T LR++ GL P +G + G+ + Sbjct: 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 Query: 83 DPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 + + VV Q L P TV EN+ + + G+ R ++ L+ Sbjct: 73 SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIEG 194 A E+SGGM +R+ ARA V P +L++DEP + LD L E LR+ L G Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS----LLARG 188 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230 + ++L+ TH +EEA +CDR+ V GR IAE Sbjct: 189 K----TILLTTHFMEEAERLCDRLCVIEE--GRKIAE 219 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 102 bits (255), Expect = 2e-22 Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 19/218 (8%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 + K G+ V++ ++F V+SGE GLLG +G+GKST+ R+I G+ SP +G++ G + Sbjct: 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV 105 Query: 82 KDPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 + I VV Q L TV EN+ + + G+ E S ++ L+ Sbjct: 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK 165 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIE 193 A +++SGGM +R+ ARA + P LL++DEP + LD L E LR+ L Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS----LLAR 221 Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230 G+ ++L+ TH +EEA +CDR+ V + GR IAE Sbjct: 222 GK----TILLTTHFMEEAERLCDRLCVLEA--GRKIAE 253 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 101 bits (253), Expect = 5e-22 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 32/233 (13%) Query: 11 LLEIQDICQSFS-----LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKST----LLR 61 LL+++ + +F LK+ + +V+ ++F + GE +GL+G SGSGKST LLR Sbjct: 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 Query: 62 IIAGLVSPSSGQVLFKG--------KKIKDPPKDISVVFQ--TFALFPWLTVLENVELGL 111 +I S G++ F G +++ I VVFQ +L P L VL+ +E GL Sbjct: 335 LIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389 Query: 112 KA--KGIDKEERRKRALSAIDLIGLDGFESAH--TTEISGGMLQRVGFARAFVVFPSLLL 167 + + +R ++ ++ ++ +GLD E+ H E SGG QR+ ARA ++ PSL++ Sbjct: 390 RVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQRQRIAIARALILKPSLII 448 Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 +DEP S+LD + L L + +L + L ++H++ +C +V+V Sbjct: 449 LDEPTSSLDKTVQAQILALLKSLQQKHQL---AYLFISHDLHVVRALCHQVIV 498 Score = 72.8 bits (179), Expect = 2e-13 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 40/261 (15%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKS-TLLRIIAGLVSP 69 LL I+++ S + ++ V++ V+ + +GE + L+G SGSGKS T L I+ L SP Sbjct: 5 LLAIENL--SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62 Query: 70 S----SGQVLFKGKKIKDPPK---------DISVVFQ--TFALFPWLTVLENVELGLKA- 113 SG + F G+ + + I+++FQ +L P L +E L Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNP----LHTLEKQLYEV 118 Query: 114 ----KGIDKEERRKRALSAIDLIGL---DGFESAHTTEISGGMLQRVGFARAFVVFPSLL 166 +G+ +E R L+ +D +G+ + + ++SGG QRV A A + P LL Sbjct: 119 LSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPG 226 + DEP +ALDV + L +L E + +L +THN+ + DRV V + G Sbjct: 179 IADEPTTALDVSVQAQILQLLRELQQELNM---GLLFITHNLSIVRKLADRVAVMQN--G 233 Query: 227 RIAEE----VLISIP-HPRNR 242 R E+ L S P HP + Sbjct: 234 RCVEQNRAATLFSAPTHPYTQ 254 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 101 bits (252), Expect = 5e-22 Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 23/203 (11%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI---------KD 83 LD ++F + G V L+G +GSGKSTL++ L+ PSSG + G I K Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 Query: 84 PPKDISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 K +S+VFQ FP TVL++VE G K G ++E +++AL + +GL Sbjct: 83 LRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138 Query: 139 SAHTT-EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 + + E+SGG ++RV A P +L +DEP + LD R +++ L+ + + Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG----RKEMMQLFKDYQKA 194 Query: 198 IESMLMVTHNIEEAVLMCDRVLV 220 ++++VTHN+++ D VLV Sbjct: 195 GHTVILVTHNMDDVAEYADDVLV 217 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 100 bits (250), Expect = 8e-22 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 33/230 (14%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII--AGLVS 68 +L++ D+ ++ KK L+ V+ + EI L+G SGSGKSTLLR I ++ Sbjct: 5 ILQVSDLSVYYNKKK------ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN 58 Query: 69 PS---SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-D 117 P +G +++ G I P K+I +VFQ FP +++ ENV GL+ KGI D Sbjct: 59 PEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKD 117 Query: 118 KE------ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171 K+ E+ + S D + +SA +SGG QRV AR P ++L+DEP Sbjct: 118 KQVLDEAVEKSLKGASIWDEVKDRLHDSA--LGLSGGQQQRVCIARVLATSPKIILLDEP 175 Query: 172 FSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 SALD ++A + L+ L + +ML+VT ++++A + DR F Sbjct: 176 TSALDPISAGKIEETLLGLKDD-----YTMLLVTRSMQQASRISDRTGFF 220 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 100 bits (250), Expect = 1e-21 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 16/221 (7%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE+ + ++ ++ LD V+F V GE V LLG +G+GKSTL ++ L Sbjct: 2 LEVAGLSFAYGARR------ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE 55 Query: 72 GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127 GQ+ G ++ P+ + VVFQ L L+V +N+ G+ + E R+R + Sbjct: 56 GQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAA 115 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 + +GL E++GG +RV ARA + P+LLL+DEP LD + + + Sbjct: 116 LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 L + L S+L TH ++E + DR++V + GR+ Sbjct: 176 RALCRDQGL---SVLWATHLVDE-IEADDRLVVL--HRGRV 210 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 99.4 bits (248), Expect = 2e-21 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 19/228 (8%) Query: 11 LLEIQDICQSFSLKKISG-NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69 LLE++D+ ++F+L + G L VL V+ V++GE V L G SG+GKSTLL+ + P Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP 60 Query: 70 SSGQVLFK--GKKI---KDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGI 116 SG++L + G + + P K I V Q + P ++ LE V L +G+ Sbjct: 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV 120 Query: 117 DKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 +E R RA + + + SGG QRV AR F+ +LL+DEP ++L Sbjct: 121 PREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223 D R +++L E + +++ + H+ E L+ DRV+ + Sbjct: 181 D----AANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVTP 224 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 99.2 bits (248), Expect = 2e-21 Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 13/198 (6%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP-PKD---- 87 LD ++F+ +G++ L+G +G+GKSTLL+I++G P +G +L G++++ Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 Query: 88 -ISVVFQTFALFPWLTVLENVELG-LKAKG--IDKEERRKRALSAIDLIGLDGFESAHTT 143 +++++Q L P +TV EN+ LG L KG +++ A ++ +G+D Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK 139 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203 +S G Q V A+A ++ DEP S+L E L + +L EGR+ +L Sbjct: 140 YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV----ILY 195 Query: 204 VTHNIEEAVLMCDRVLVF 221 V+H +EE +CD + VF Sbjct: 196 VSHRMEEIFALCDAITVF 213 Score = 58.8 bits (143), Expect = 3e-09 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 48/227 (21%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-DPPKDISVVFQT 94 ++F+V +GEIVGL G G+G+S L++++ G ++GQV GK I P+D + Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRD--AIRAG 329 Query: 95 FAL----------FPWLTVLENVELG-----LKAKGI-------DKEERRKRAL-----S 127 L P +V +N+ + L+A + + +R R+L S Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 LI +SGG Q+ R ++L+DEP +DV A++ ++ Sbjct: 390 REQLIMN----------LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDV-GAKHEIYNV 438 Query: 188 I-DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233 I +L +G ++L V+ ++ E + + DR++V GRIA E+ Sbjct: 439 IYELAAQGV----AVLFVSSDLPEVLGVADRIVVMRE--GRIAGELA 479 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 99.0 bits (247), Expect = 2e-21 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 23/230 (10%) Query: 11 LLEIQDICQSFSLKKISG-------NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII 63 LLE+ D+ F +K L +D V + GE +G++G SG GKST R I Sbjct: 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 67 Query: 64 AGLVSPSSGQVLFKGK--------KIKDPPKDISVVFQT--FALFPWLTVLENVELGLKA 113 GLV + G+V + GK + + DI ++FQ +L P +T+ E + L+ Sbjct: 68 IGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 Query: 114 --KGIDKEERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDE 170 + ++E + R + + +GL + + E SGG QR+G ARA ++ P L++ DE Sbjct: 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 187 Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 P SALDV + L L E L S++ + H++ + DRVLV Sbjct: 188 PVSALDVSIQAQVVNLLQQLQREMGL---SLIFIAHDLAVVKHISDRVLV 234 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 99.2 bits (248), Expect = 2e-21 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 28/191 (14%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP--- 84 G ++ ++F +++GE + L G +GSGK+TLLR+IAGL+ P++G + G I DP Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72 Query: 85 -------PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 ++ A+ P LTV EN+E G +A++ +GL Sbjct: 73 EACHYLGHRN--------AMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPL 120 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +S G +RV AR V + ++DEP +ALD A L +L I L Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA-AAVALFAEL----IRAHLA 175 Query: 198 IESM-LMVTHN 207 + + TH Sbjct: 176 QGGIVIAATHI 186 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 98.3 bits (245), Expect = 3e-21 Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 15/211 (7%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK- 86 G L++D V+ G + GLLG +GSGKSTLLR++AG + P +G V G + + Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71 Query: 87 ----DISVVFQTFALFPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLDGFE 138 +++V Q LTV + V LG D A+ L Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 + +SGG QRV ARA P LLL+DEP + LDV + +L G + Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229 ++ H++ A CD V+V GR+ Sbjct: 192 AAL----HDLNLAASYCDHVVVLDG--GRVV 216 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 98.1 bits (245), Expect = 4e-21 Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 14/221 (6%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 + +++++++ S+ + L V+F ++ GE V +LG +GSGKST+ +I+ GL+ Sbjct: 4 KSVMIKVENVSFSYP----NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59 Query: 68 SPSSGQVLFKGKKI-----KDPPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEER 121 P SG++ G I K+ K I ++FQ F TV +++ GL+ K + ++ Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 + +G++ + +SGG QRV A + P +++ DE S LD Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 ++ ++DL + + S +TH+++EA+L D+V+VFS Sbjct: 180 EIKKIMVDLRKTRKKTLIS---ITHDMDEAIL-ADKVIVFS 216 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 97.6 bits (244), Expect = 6e-21 Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 18/195 (9%) Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG------QVLFK-GKKIKDPP-- 85 VN + + I + GRSG+GK++L+ I+GL P G +VLF K I PP Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145 + I VFQ LFP V N+ G+ + + L+G++ + + Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKS--MVAQ----FDKIVALLGIEPLLDRYPGSL 129 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGG QRV RA + P LLLMDEP ++LD+ L L L E +PI L V+ Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI---LYVS 186 Query: 206 HNIEEAVLMCDRVLV 220 H+++E + + DRV+V Sbjct: 187 HSLDEILRLADRVVV 201 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 97.3 bits (242), Expect = 7e-21 Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 17/216 (7%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 + K G+ +V++ ++F ++ GE GLLG +G+GKST+ R++ G++SP G++ G+ + Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69 Query: 83 DPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 + I VV Q L P TV EN+ + + G+ E S ++ L+ Sbjct: 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 129 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIEG 194 +SGGM +R+ ARA + P LL++DEP + LD L E LR+ L G Sbjct: 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS----LLARG 185 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 + ++L+ TH +EEA +CDR+ V S +IAE Sbjct: 186 K----TILLTTHFMEEAERLCDRLCVLESGR-KIAE 216 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 97.1 bits (242), Expect = 8e-21 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 18/214 (8%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKST----LLRIIAGLVSPSSGQVLFKGKKI---KD 83 LV D +N ++ GE++ L+G SGSGKS +L ++ ++ +SG++L G+ + Sbjct: 1 LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI 59 Query: 84 PPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE--- 138 + I+ + Q A P T+ + L++ G ++ R L A++ +GL E Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL 119 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 + ++SGGMLQRV A A ++ P L+ DEP + LDV+ + L+ + Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV-LKLLRELRQLFGT- 177 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 +L++TH++ + D V V GRI E Sbjct: 178 -GILLITHDLGVVARIADEVAVMDD--GRIVERG 208 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 97.1 bits (242), Expect = 9e-21 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 30/252 (11%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL+++D+ +FS G++ ++ +NF++ +GE +G++G SGSGKS + GL++ + Sbjct: 12 LLDVKDLRVTFSTP--DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69 Query: 71 ---SGQVLFKGKKIKDPP---------KDISVVFQ--TFALFPWLTVLENV-ELGLKAKG 115 G F G++I + P + IS++FQ +L P++ V E + E+ + KG Sbjct: 70 GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129 Query: 116 IDKE---ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172 + K E R L A+ + + E SGGM QRV A A + P LL+ DEP Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189 Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI---- 228 +ALDV + T L +L E I +M+TH++ +CD+VLV + GR Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAI---IMITHDLGVVAGICDKVLVMYA--GRTMEYG 244 Query: 229 -AEEVLISIPHP 239 A +V HP Sbjct: 245 NARDVFYQPSHP 256 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 96.8 bits (242), Expect = 9e-21 Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 24/171 (14%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE+ ++ + G +L V+ V GE+ +LGR+G GK+TLL+ + GL+ S Sbjct: 1 LEVSNLNVYY------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS 54 Query: 72 GQVLFKGKKI-KDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 G + G+ I K PP I+ V Q +FP LTV EN+ GL A RR R Sbjct: 55 GSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP-----RRSRK 109 Query: 126 LSAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171 + D I L ++SGG Q++ ARA V P LLL+DEP Sbjct: 110 I--PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 96.7 bits (241), Expect = 1e-20 Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 19/191 (9%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87 G+ VLD V+ ++ GE V +LG SGSGKSTLL ++ GL+ P G+V G + + Sbjct: 346 GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDE 405 Query: 88 ISVVFQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAI---DLI-----GLDG 136 + FA L TV +N+ LG EE AL + D + GLD Sbjct: 406 LRRRISVFAQDAHLFDTTVRDNLRLG--RPDATDEE-LWAALERVGLADWLRSLPDGLDT 462 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 +SGG QR+ ARA + +LL+DEP LD T L DL+ + G+ Sbjct: 463 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKT 521 Query: 197 PIESMLMVTHN 207 ++++TH+ Sbjct: 522 ----VVVITHH 528 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 96.4 bits (240), Expect = 1e-20 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 16/205 (7%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86 +L ++ G I ++G SG+GKSTL+++I L+ P+ G +L G IK D + Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG-FESAHTTEI 145 I +VFQ LF TV +N+E G KG E+ + ++GL+ + + + Sbjct: 78 KIGMVFQQPHLFEG-TVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNL 132 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGG QRV AR P +LL+DEP SALD + E + ++ L + L + + +T Sbjct: 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV---IWIT 189 Query: 206 HNIEEAVLMCDRVLVFSSNPGRIAE 230 HN+E+A + D N G + E Sbjct: 190 HNMEQAKRIGDYTAFL--NKGILVE 212 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 96.3 bits (240), Expect = 1e-20 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 42/250 (16%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +++++I + F KK+ L LD V+ ++ GE + ++G++GSGK+T + + L+ P + Sbjct: 3 IKVKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61 Query: 72 GQVLF-----------------------------KGKKIKDPPKDISVVFQTFA---LFP 99 G + + K KKIK+ + + VVFQ FA LF Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ-FAEYQLFE 120 Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARA 158 T+ +++ G + G+ KEE +KRA I+L+GLD + E+SGG +RV A Sbjct: 121 -QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 Query: 159 FVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218 + P L+ DEP + LD + + +L +G+ ++++VTH+++ + R Sbjct: 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK----TIILVTHDLDNVLEWTKRT 235 Query: 219 LVFSSNPGRI 228 + F G+I Sbjct: 236 IFF--KDGKI 243 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 96.0 bits (239), Expect = 2e-20 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 39/218 (17%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIK 82 G+ LD V+ ++ ++ ++G SG GKST LR I + + G++ F+GK + Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDK------EERRKRAL--- 126 D D I +VFQ FP ++ +NV GLK +G D EE +RA Sbjct: 110 DADVDPVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD 168 Query: 127 ---SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 +D GLD +SGG QR+ ARA P ++LMDEP SALD + + Sbjct: 169 EVKDQLDSSGLD---------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI 219 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 DLI+ E ++++VTHN+++A + D+ VF Sbjct: 220 E-DLIEELAEEY----TVVIVTHNMQQAARISDKTAVF 252 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 95.5 bits (238), Expect = 3e-20 Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 12/205 (5%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPKD 87 L V+F+V GE V ++G +GSGKSTL +++ GL+ P +G + G + D + Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 Query: 88 ISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146 + +VFQ F TV ++V GL+ G+ +EE +R A+ +G++ F + +S Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLS 142 Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206 GG QRV A + P ++++DE S LD + + L + + ++L +TH Sbjct: 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI---TVLSITH 199 Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEE 231 +++EA DRV+V N G I EE Sbjct: 200 DLDEA-AQADRVIVM--NKGEILEE 221 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 93.8 bits (233), Expect = 8e-20 Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 48/249 (19%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +++ D+ F G+ VLD V+ +V G +VGL+G +G+GK+TLLR I G ++P++ Sbjct: 4 IDVSDLSVEF------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA 57 Query: 72 GQVLFKG------------KKIKDPPKDISVVFQTFALFPWLTVLENVELG----LKAKG 115 G VL G +++ P+D S+ F+ V + VE+G Sbjct: 58 GTVLVAGDDVEALSARAASRRVASVPQDTSLSFE-------FDVRQVVEMGRTPHRSRFD 110 Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 E R A++ G+ F T +SGG QRV ARA +LL+DEP ++L Sbjct: 111 TWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL 170 Query: 176 D----VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI--- 228 D V T E +R L+D +G+ + ++ H+++ A CD +++ + GR+ Sbjct: 171 DINHQVRTLELVR-RLVD---DGKTAVAAI----HDLDLAARYCDELVLLAD--GRVRAA 220 Query: 229 --AEEVLIS 235 +VL + Sbjct: 221 GPPADVLTA 229 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 93.7 bits (233), Expect = 8e-20 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 30/234 (12%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 L+E +D+C S+S G+ L+ +NF + ++G +G+GKSTL R G++ P+ Sbjct: 3 LIETRDLCYSYS-----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57 Query: 71 SGQVLFKG-----KKIKDPPKDISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEE 120 SG VL +G + I++ K + +VFQ F+ TV +++ G G+D+E Sbjct: 58 SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS----PTVEQDIAFGPINLGLDEET 113 Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 R SA+ ++GL+ +SGG +RV A + P +L++DEP + LD Sbjct: 114 VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG- 172 Query: 181 ENLRTDLIDLWIEGRLPIESMLMV---THNIEEAVLMCDRVLVFSSNPGRIAEE 231 +LID LP + V TH ++ M D + V + GRI Sbjct: 173 ---VKELIDFL--NDLPETYGMTVIFSTHQLDLVPEMADYIYVM--DKGRIVAY 219 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 93.4 bits (232), Expect = 9e-20 Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 18/221 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +L+++++ ++S L +N N+ GE+ +LG +G+GKSTL + + G++ PS Sbjct: 5 ILKVEELNYNYS-----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59 Query: 71 SGQVLFKGKKIKDPPK-------DISVVFQT--FALFPWLTVLENVELGLKAKGIDKEER 121 SG++LF GK I K + +VFQ LF +V ++V G + ++E Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLPEDEV 118 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 RKR +A+ G++ + T +S G +RV A V+ P +L++DEP + LD + Sbjct: 119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 + L+++ E L I ++ TH+I+ L CD V V Sbjct: 179 EIMKLLVEMQKELGLTI---IIATHDIDIVPLYCDNVFVMK 216 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 93.2 bits (232), Expect = 1e-19 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 40/231 (17%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLFKGKKIK 82 G+ ++ VN N+ + +G SG GKST+LR + + V P + G+VL G+ + Sbjct: 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74 Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135 P + I +VFQ FP +++ +NV GLK G R K+ L + L Sbjct: 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG----VRNKKDLDELVEKSLR 130 Query: 136 GFESAHTTE---------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENL 183 G + + +SGG QR+ ARA V P +LLMDEP SALD L E+L Sbjct: 131 GANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDL 190 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS----SNPGRIAE 230 +L + ++++VTHN+++A + D+ F+ PGR+ E Sbjct: 191 INELKQDY--------TIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 93.2 bits (232), Expect = 1e-19 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 41/220 (18%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82 G+ L K+N ++ ++ L+G SG GKST LR + + + PS G+VL G+ I Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 Query: 83 DPPKDI-------SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135 D+ +VFQ FP +++ +NV G + GI + K+ L I L Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI----KDKKKLDEIVEKSLK 128 Query: 136 GF-----------ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAE 181 G +SA +SGG QR+ ARA V P +LLMDEP SALD L E Sbjct: 129 GAALWDEVKDRLKKSA--LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 L +L + ++++VTHN+++A + D+ F Sbjct: 187 ELIQELKKDY--------TIVIVTHNMQQASRISDKTAFF 218 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 93.2 bits (232), Expect = 1e-19 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 30/237 (12%) Query: 6 IKDNR-LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64 +++N LL++Q++ KI L+ ++F++ +GE + G SG GKSTLL+I+A Sbjct: 1 MQENSPLLQLQNVGYLAGDAKI------LNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54 Query: 65 GLVSPSSGQVLFKGKKIKD-PP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKE 119 L+SP+SG +LF+G+ I P + +S QT LF TV +N+ + + + Sbjct: 55 SLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPD 113 Query: 120 ERRKRALSAIDLIGLDGFESAHTT------EISGGMLQRVGFARAFVVFPSLLLMDEPFS 173 L+ F T E+SGG QR+ R P +LL+DE S Sbjct: 114 PAIFLD-------DLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 ALD N+ ++I ++ + ++L VTH+ +E + D+V+ + G + E Sbjct: 167 ALDESNKHNV-NEIIHRYVREQNI--AVLWVTHDKDE-INHADKVITLQPHAGEMQE 219 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 93.3 bits (232), Expect = 1e-19 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 11/211 (5%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 SL K+ G LD+V+F G IVG LG +G+GKST ++II G + P SG V G+ + Sbjct: 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66 Query: 82 KDPPKDISVVF----QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 PK++ + L+ + V E ++ G+ + ++R I+L+GL Sbjct: 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 + ++S G QRVG A+A + P +L++DEP + LD +R + ++ + Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD---- 182 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 +++++ TH ++E +CDRV++ N G+I Sbjct: 183 -KTIILSTHIMQEVEAICDRVIII--NKGKI 210 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 93.2 bits (231), Expect = 1e-19 Identities = 72/208 (34%), Positives = 106/208 (50%), Gaps = 32/208 (15%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPPKD--- 87 VN +V G + L+G SG GK+T LR I + ++P +G++L G+ I P D Sbjct: 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 Query: 88 ----ISVVFQTFALFPWLTVLENVELGLKAKGI-------DKEERRKRALSAIDLIGLDG 136 + +VFQ FP ++V +NV GLK GI + ER R + D + D Sbjct: 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-DR 141 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTDLIDLWIE 193 ++ T +SGG QR+ ARA V P +LLMDEP SALD + E+L TDL Sbjct: 142 LKTP-ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---- 196 Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + ++++VTHN+ +A + D F Sbjct: 197 ----VTTIIIVTHNMHQAARVSDTTSFF 220 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 92.9 bits (231), Expect = 1e-19 Identities = 59/206 (28%), Positives = 113/206 (54%), Gaps = 27/206 (13%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-GKKIKDPPKD---- 87 +D V+ V GEI G++G SG+GK+TL +IIAG++ P+SG+V + G + D K Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359 Query: 88 -------ISVVFQTFALFPWLTVLENVELGLKAKGID--KEERRKRALSAIDLIGLDGFE 138 I ++ Q + L+P TVL+N+ +A G++ E R +A+ + ++G D + Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLT---EAIGLELPDELARMKAVITLKMVGFDEEK 416 Query: 139 SA-----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193 + + E+S G RV A+ + P ++++DEP +D +T + D+ ++ Sbjct: 417 AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT----KVDVTHSILK 472 Query: 194 GRLPI-ESMLMVTHNIEEAVLMCDRV 218 R + ++ ++V+H+++ + +CDR Sbjct: 473 AREEMEQTFIIVSHDMDFVLDVCDRA 498 Score = 87.6 bits (217), Expect = 6e-18 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 57/277 (20%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--P 69 +E++++ + F VL ++F + GE++G+LGRSG+GKS L+ ++ G+ P Sbjct: 1 IEVKNLTKKF------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP 54 Query: 70 SSGQVLF------KGKKIKDPPKD--------------------------------ISVV 91 +SG++++ K ++ P K I+++ Sbjct: 55 TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIM 114 Query: 92 FQ-TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150 Q TFAL+ TVL+NV L+ G + +E RA+ I+++ L + ++SGG Sbjct: 115 LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174 Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE- 209 QRV AR P L L DEP LD TA+ + L + + SM++ +H E Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI---SMVLTSHWPEV 231 Query: 210 ------EAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240 +A+ + + + P + + + Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVE 268 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 92.8 bits (230), Expect = 1e-19 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 28/229 (12%) Query: 14 IQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV----SP 69 +Q I + L K L V+ N+ GE+V LLG SGSGKSTLLR ++GL+ S Sbjct: 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60 Query: 70 SSGQVLF------KGKKIKDPPKD---ISVVFQTFALFPWLTVLENVELGLKAKGID--- 117 S L +G+ +D K +FQ F L L+VLENV +G A G Sbjct: 61 GSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG--ALGSTPFW 118 Query: 118 -------KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDE 170 E+++RAL A+ +G+ F + +SGG QRV ARA + ++L DE Sbjct: 119 RTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178 Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219 P ++LD +A + L D+ + ++++ H ++ A+ C+R++ Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGI---TVVVTLHQVDYALRYCERIV 224 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 91.7 bits (228), Expect = 3e-19 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI----KD 83 G ++ + ++F +++GE + + G +G GK+TLLRI+AGL+ P SG+V + G + + Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70 Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 P ++I + L P L+ LEN L A +R A+ +GL GFE Sbjct: 71 PHRNILYLGHLPGLKPELSALEN--LHFWAAIHGGAQR--TIEDALAAVGLTGFEDLPAA 126 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 ++S G +R+ AR ++ L ++DEP +ALD Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 91.6 bits (227), Expect = 3e-19 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 27/228 (11%) Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS 70 E + I S + G L ++ + + EI L+G SG GKST LR + + + P Sbjct: 1 EAKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60 Query: 71 ---SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE 119 +G V +G+ I P K + +VFQ FP+ ++ ENV GL+ G+ DK Sbjct: 61 VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYGLRLAGVKDKA 119 Query: 120 ------ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173 E + + D + ESA +SGG QRV AR V P ++L+DEP S Sbjct: 120 VLDEAVETSLKQAAIWDEVKDHLHESA--LSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177 Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 ALD +++ + L++L + ++++VTH++ +A + D+ F Sbjct: 178 ALDPISSTQIENMLLELRDQ-----YTIILVTHSMHQASRISDKTAFF 220 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 91.5 bits (228), Expect = 3e-19 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 29/174 (16%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI--- 88 +++ + + G+ V L+G SGSGKST+ +++AGL P SG++LF G ++ P+++ Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553 Query: 89 --SVVFQTFALFPWLTVLENVELGLKAKGIDK---EERRKRAL--SAI-DLIGL--DGFE 138 ++V Q LF TV +N+ L D + RA +AI D+I G++ Sbjct: 554 SVAMVDQDIFLFEG-TVRDNLTL------WDPTIPDADLVRACKDAAIHDVITSRPGGYD 606 Query: 139 SAHTTE----ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA----ENLR 184 A E +SGG QR+ ARA V PS+L++DE SALD T +NLR Sbjct: 607 -AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 91.6 bits (227), Expect = 4e-19 Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 33/238 (13%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS------PSSGQVLFKGKKIKDPP 85 +L + + + I G++G SGSGKSTLL+++ L+ G+VL+ GK I Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 Query: 86 -----KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL----- 134 K++ +VFQ FP L++ +N+ LK+ GI +K E +K + +GL Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144 Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 D S +++SGG QR+ ARA + P +LLMDEP S +D++ ++ + + +L E Sbjct: 145 DRLNSP-ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE- 202 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE-----EVLISIPHPRNRLSPEF 247 ++++V+HN ++ + D V F N G + E E+ S P+N L+ ++ Sbjct: 203 ----IAIVIVSHNPQQVARVADYV-AFLYN-GELVEWGSSNEIFTS---PKNELTEKY 251 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 91.7 bits (228), Expect = 4e-19 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 19/213 (8%) Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKD 87 + LD +N V GE V L+G SG+GKSTL +++ P SG++L G ++ P + Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 Query: 88 ----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFE 138 +++V Q LF +V+EN+ G ++ E RA A + I G D + Sbjct: 412 LRARMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYL 470 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 +SGG QR+ ARA + +LL+DE SALD + + ++ L L ++GR Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGR--- 526 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + L++ H + VL DR++V GRI + Sbjct: 527 -TTLIIAHRL-ATVLKADRIVVMDQ--GRIVAQ 555 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 91.4 bits (228), Expect = 4e-19 Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 15/155 (9%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90 ++ ++F +++GE+V + G +G+GK++LLRI+AGL P +G+VL++G+ I+ + Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE--- 71 Query: 91 VFQTFALF--------PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142 + L+ LT LEN+ + G +E AL+ +GL GFE Sbjct: 72 -YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---VGLAGFEDVPV 127 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 ++S G +RV AR ++ L ++DEPF+A+D Sbjct: 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 91.3 bits (227), Expect = 5e-19 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 23/212 (10%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK--IKDPP---K 86 VL +N ++ GE +G++G SGSGKSTL +++ L +P GQVL G I DP + Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA--LSAIDLI-----GLDGFES 139 + VV Q LF ++ +N+ L G E A A D I G + Sbjct: 532 QMGVVLQENVLFSR-SIRDNIALC--NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 +SGG QR+ ARA V P +L+ DE SALD + + ++ ++ GR Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGR---- 643 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +++++ H + V CDR++V G+IAE Sbjct: 644 TVIIIAHRL-STVRACDRIIVLEK--GQIAES 672 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 90.8 bits (225), Expect = 6e-19 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 29/240 (12%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--PS---SGQVLFKGKKIK 82 G + V + +I ++G SG GK+TLLR I + P G++ FKG+ I Sbjct: 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73 Query: 83 DPPKDISV-------VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI------ 129 DP D++ VFQ FP +++ +NV G + G+ + + R + Sbjct: 74 DPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132 Query: 130 -DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 D + + + T +SGG QR+ ARA V P ++L+DEP SALD + T I Sbjct: 133 WDEVKSELNKPG--TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA-----TQRI 185 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRV-LVFSSNPGRIAEEVLISIPHPRNRLSPEF 247 + +E ++++VTHNI +A+ + D + ++ I + P+N+L+ E+ Sbjct: 186 EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI-VERPKNKLTEEY 244 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 90.8 bits (226), Expect = 7e-19 Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 26/202 (12%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86 VN ++ SG V ++G +GSGKSTLL+ + GL+ P+SG V K KK+K K Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85 Query: 87 DISVVFQTFA---LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 + +VFQ F LF TV +++ G G+ +E+ +++A I+L+GL A + Sbjct: 86 KVGIVFQ-FPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP 143 Query: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI----EGRLPI 198 E+SGG ++RV A + P +L++DEP + LD R ++++++ E L Sbjct: 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD----PKGRKEMMEMFYKLHKEKGLTT 199 Query: 199 ESMLMVTHNIEEAVLMCDRVLV 220 ++VTH++E+A D+++V Sbjct: 200 ---VLVTHSMEDAARYADQIVV 218 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 90.5 bits (225), Expect = 8e-19 Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 28/214 (13%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 LD ++ + GE V L+GRSGSGKSTL+ +I P SGQ+L G + D Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK--RALSAIDLI-----GLDGFES 139 +++V Q LF T+ N+ G + + D+ E + A A D + GLD Sbjct: 407 QVALVSQDVVLFN-DTIANNIAYG-RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 + +SGG QR+ ARA + +L++DE SALD +E L ++ ++GR Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN-ESERLVQAALERLMQGR---- 519 Query: 200 SMLMVTH---NIEEAVLMCDRVLVFSSNPGRIAE 230 + L++ H IE+A DR++V GRI E Sbjct: 520 TTLVIAHRLSTIEKA----DRIVVMDD--GRIVE 547 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 90.3 bits (224), Expect = 9e-19 Identities = 73/203 (35%), Positives = 98/203 (48%), Gaps = 16/203 (7%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS--GQVLFKGKKIKDPP-KDI 88 +L+ V S GEI+ +LG SGSGKSTLL +AG + ++ G +L +K K Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142 Query: 89 SVVFQTFALFPWLTVLEN---VELGLKAKGIDKEERRKRALSAIDLIGLDGFES-----A 140 V Q L+P LTV E L K + K+E+ A S I +GL E+ + Sbjct: 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNS 202 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 ISGG +RV A ++ PSLL++DEP S LD A L L L +G+ + S Sbjct: 203 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262 Query: 201 MLMVTHNIEEAVL-MCDRVLVFS 222 M H V M D VLV S Sbjct: 263 M----HQPSSRVYQMFDSVLVLS 281 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 90.1 bits (223), Expect = 9e-19 Identities = 63/203 (31%), Positives = 110/203 (54%), Gaps = 17/203 (8%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 +D++N +I LG +G+GK+T L I+ GL+ P+SG VL GK I+ ++ V Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---TNLDAVR 1002 Query: 93 QTFA-------LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145 Q+ LF LTV E++ + KG EE + + ++ GL + ++ Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDL 1062 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGGM +++ A AFV ++++DEP S +D + ++ DL+ + GR +++M T Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI-WDLLLKYRSGR----TIIMST 1117 Query: 206 HNIEEAVLMCDRVLVFSSNPGRI 228 H+++EA L+ DR+ + S GR+ Sbjct: 1118 HHMDEADLLGDRIAIISQ--GRL 1138 Score = 75.0 bits (184), Expect = 3e-14 Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 14/195 (7%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 +D++ V GE GLLG +G+GK+T +++ G + +SG GK I +IS V Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL---TNISDVH 2011 Query: 93 QTFALFP-------WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145 Q P LT E++ L + +G+ EE K A +I +GL + Sbjct: 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY 2071 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGG +++ A A + P L+L+DEP + +D L ++ + EGR ++++ + Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR----AVVLTS 2127 Query: 206 HNIEEAVLMCDRVLV 220 H++EE +C R+ + Sbjct: 2128 HSMEECEALCTRLAI 2142 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 89.2 bits (222), Expect = 2e-18 Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 34/217 (15%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--- 87 L+LD V+ + GE V ++G SGSGKSTLLR++ G +P SG V + G+ + Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 Query: 88 --ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA----- 140 + VV Q L ++ EN+ + +E A A + GL A Sbjct: 527 RQLGVVLQNGRLMSG-SIFENI---AGGAPLTLDE----AWEAARMAGLAEDIRAMPMGM 578 Query: 141 HT------TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 HT +SGG QR+ ARA V P +LL DE SALD T + L Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL------E 632 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 RL + + +++ H + + DR+ V + GR+ ++ Sbjct: 633 RLKV-TRIVIAHRL-STIRNADRIYVL--DAGRVVQQ 665 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 88.9 bits (220), Expect = 2e-18 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 25/208 (12%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-----PSSGQVLFKGKKIK 82 GN L ++ + E+ L+G SG GKST LR + + +G++ F+G+ I Sbjct: 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74 Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE---ERRKRAL--SAI 129 K++ +VFQ FP+ +V +NV GLK G+ DKE +R + +L +AI Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133 Query: 130 DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189 D + + SGG QR+ ARA V P ++L+DEP SALD +++ + L++ Sbjct: 134 WKETKDNLDR-NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192 Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDR 217 L + + +MVTHN+++A + D+ Sbjct: 193 LKHQ-----YTFIMVTHNLQQAGRISDQ 215 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 88.6 bits (220), Expect = 3e-18 Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 30/219 (13%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86 VN + G +G +GSGKST+++++ GL P+ G V K K IK K Sbjct: 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK 85 Query: 87 DISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESA 140 + +VFQ FP TVL++V G + G+ +EE A + L+G+ Sbjct: 86 KVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 + E+SGG ++RV A + P +L++DEP + LD R +L+ L+ + + Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG----RKELMTLFKKLHQSGMT 197 Query: 201 MLMVTHNIEEAVLMCDRV-------LVFSSNPGRIAEEV 232 +++VTH +++ D V LV S P I ++V Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDV 236 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 88.0 bits (218), Expect = 4e-18 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 48/228 (21%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR------------------IIAGL--VSPSS 71 +L +N ++ E+ +G SG GKST LR I G+ S + Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 Query: 72 GQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR-----KRAL 126 VL + K + +VFQ FP ++ +NV G K G+ K +++ +++L Sbjct: 80 NVVLLRAK--------VGMVFQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSL 130 Query: 127 SAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---EN 182 +++ L L E+SGG QR+ ARA V P++LLMDEP SALD + EN Sbjct: 131 TSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN 190 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 L +L + I ++VTH++++A + DRV F S GRI E Sbjct: 191 LIQEL-----KKNFTI---IVVTHSMKQAKKVSDRVAFFQS--GRIVE 228 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 87.0 bits (216), Expect = 9e-18 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 20/216 (9%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL + I + +S + VL ++F + +GE+ LLG +G+GKSTL++IIAG+V P Sbjct: 11 LLCARSISKQYS------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD 64 Query: 71 SGQVLFKGKKIK--DPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124 SG + G P K I +V Q LFP L+V EN+ GL K ++ K+ Sbjct: 65 SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQ 123 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 L+A+ LD SA + E++ Q V R + +L++DEP ++L E L Sbjct: 124 LLAALG-CQLDLDSSAGSLEVADR--QIVEILRGLMRDSRILILDEPTASLTPAETERLF 180 Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + + +L +G ++ ++H + E + DR+ V Sbjct: 181 SRIRELLAQG----VGIVFISHKLPEIRQLADRISV 212 Score = 62.4 bits (152), Expect = 2e-10 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 43/211 (20%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KDPPKD---ISVV 91 ++ V +GEI+GL G G+G++ L + GL G+++ GK+I +V Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 Query: 92 F-----QTFALF-----PWLTV-LENVELGLKAKGIDKE----ERRKRALSAIDLIGLDG 136 + Q+ L+ W L + G K +E ER +RAL+ I + Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKP-ARENAVLERYRRALN----IKFNH 396 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 E A T +SGG Q+V A+ P LL++DEP +DV + R D+ L Sbjct: 397 AEQAART-LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV----SARNDIYQL------ 445 Query: 197 PIESM-------LMVTHNIEEAVLMCDRVLV 220 I S+ L ++ ++EE M DRVLV Sbjct: 446 -IRSIAAQNVAVLFISSDLEEIEQMADRVLV 475 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 86.8 bits (215), Expect = 9e-18 Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 27/213 (12%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIK 82 G+ L ++ ++ L+G SG GKST LR + + + G++L G+ I Sbjct: 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-------DKEERRKRALSA 128 DP D + +VFQ FP ++ ENV GL+ G+ ++ ER R + Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL 135 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 D + ESA +SGG QR+ ARA V P +LLMDEP SALD + + + +LI Sbjct: 136 WDEVKDRLHESA--LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELI 192 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 ++ R I ++VTHN+++A + D F Sbjct: 193 HE-LKARYTI---IIVTHNMQQAARVSDVTAFF 221 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 86.3 bits (213), Expect = 1e-17 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 23/201 (11%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86 ++ V G L+G +GSGKSTLL+ + GL+ P+ G+V K K+IK K Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84 Query: 87 DISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG-FESA 140 + VVFQ FP TVL++V G + GI KE+ K A ++++GL F Sbjct: 85 KVGVVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK 140 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 E+SGG ++RV A + P +L++DEP + LD R +++ L+ ++ Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD----PKARIEMMQLFESIHQSGQT 196 Query: 201 MLMVTHNIEEAVLMCDRVLVF 221 +++VTH +++ D V + Sbjct: 197 VVLVTHLMDDVADYADYVYLL 217 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 86.0 bits (213), Expect = 2e-17 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 23/223 (10%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 + + I +SF G + L VN V GEI LLG +G+GKSTL+++++G+ P+ Sbjct: 5 YISMAGIGKSF------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58 Query: 71 SGQVLFKGKKI-KDPPKD-----ISVVFQTFALFPWLTVLENVELGL----KAKG---ID 117 G + K K I +++Q ++ LTVLEN+ +G K G ID Sbjct: 59 KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID 118 Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 E R RA + +GL +S Q + A+ ++ +++MDEP S+L Sbjct: 119 WREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178 Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + L + L EG +++ ++H + E +CDR V Sbjct: 179 KEVDYLFLIMNQLRKEGT----AIVYISHKLAEIRRICDRYTV 217 Score = 71.4 bits (175), Expect = 5e-13 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 35/221 (15%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTF 95 ++F+V GEI+G G GSG++ L+ + G+ + G++ GK I P + V + Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS-PRSPLDAVKKGM 340 Query: 96 AL----------FPWLTVLENVEL-------GLK-AKGI--DKEERR----KRALSAIDL 131 A FP ++ +N+ + G K A G+ + +E+R +R L A+ Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191 ++ + TE+SGG Q+V ++ P +++ DEP +DV + + L Sbjct: 401 HSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA 456 Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 +G+ +LMV+ + E + +CDR+ VF GR+ + + Sbjct: 457 DDGK----VILMVSSELPEIITVCDRIAVFCE--GRLTQIL 491 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 85.9 bits (213), Expect = 2e-17 Identities = 68/244 (27%), Positives = 129/244 (52%), Gaps = 35/244 (14%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-P---SSGQVLFKG---KKIKDPP 85 +D+++++V GE+VG++G SGSGKS I GL+ P + ++ F G ++I + Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 Query: 86 K------DISVVFQ--TFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGLDG 136 + +++++FQ +L P TV + +K +G +K+ RR+RA+ ++ +G+ Sbjct: 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142 Query: 137 FES---AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193 S + ++SGGM QRV A A P LL+ DEP +ALDV ++ +I+L +E Sbjct: 143 PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV----TIQAQIIELLLE 198 Query: 194 -GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRN----RL 243 + +++++TH++ +++V + G++ A ++ + HP R Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYA--GQVVETGKAHDIFRAPRHPYTQALLRA 256 Query: 244 SPEF 247 PEF Sbjct: 257 LPEF 260 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 85.8 bits (212), Expect = 2e-17 Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 27/213 (12%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLFKGKKIK 82 G+ L ++ + +V +G SG GKST LR+ + + P++ G++ G+ I Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL 134 D K++ +VFQ FP ++ ENV GL+ G+ D R+R + L Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL 132 Query: 135 -----DGF-ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 D ESA +SGG QR+ ARA V PS+LLMDEP SALD ++ + + Sbjct: 133 WDEVKDKLKESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH 190 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 +L + ++++VTHN+++A + D+ F Sbjct: 191 ELKKD-----YTIVIVTHNMQQAARVSDKTAFF 218 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 84.9 bits (210), Expect = 4e-17 Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 11/198 (5%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP------ 85 V++ V+ V+SGEIVGLLG +G+GK+T ++ G+V +G ++ + I P Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGLDGFESAHTTE 144 + I + Q ++F L+V +N+ L+ + E+R RA ++ ++ + Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137 Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204 +SGG +RV ARA P +L+DEPF+ +D ++ +++ + L G +L+ Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL----GVLIT 193 Query: 205 THNIEEAVLMCDRVLVFS 222 HN+ E + +C+R + S Sbjct: 194 DHNVRETLAVCERAYIVS 211 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 84.7 bits (210), Expect = 4e-17 Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 39/229 (17%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP 85 G L ++F + +GE + ++G SGSGKSTL R+I G+ P+SG V G +K D Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 Query: 86 ---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK-----RALSAIDLIGLDGF 137 K I + Q LFP TV EN+ A+ + + K + +LI Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENI-----ARFGENADPEKIIEAAKLAGVHELIL--RL 440 Query: 138 ESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + T I SGG QR+ ARA P L+++DEP S LD + L + L Sbjct: 441 PDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMC-DRVLVFSSNPGRIA-----EEVL 233 G +++++TH ++L C D++LV GRIA +EVL Sbjct: 501 KARGI----TVVVITHRP--SLLGCVDKILVL--QDGRIARFGERDEVL 541 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 84.6 bits (210), Expect = 4e-17 Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 19/177 (10%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLE+++I ++F G + LD V+ V +GEIV L G +G+GKSTL+++++G V P Sbjct: 5 LLEMKNITKTF------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPH 57 Query: 71 ---SGQVLFKGKK-----IKDPP-KDISVVFQTFALFPWLTVLENVELG---LKAKGIDK 118 G+++F+G++ I+D I+++ Q AL L+VLEN+ LG +D Sbjct: 58 GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDY 117 Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 + RA + + LD + + G Q V A+A LL++DEP ++L Sbjct: 118 DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174 Score = 46.5 bits (111), Expect = 2e-05 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 36/220 (16%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP--SSGQVLFKGKKIK-DPPKD- 87 +D V+F++ GEI+G+ G G+G++ L++ + G P G++ GK +K P+ Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQA 335 Query: 88 ----ISVV---FQTFALFPWLTVLENVELGL-----KAKGIDKEERRKRALSAIDLIGLD 135 I++V + + P + V +N+ L ID K L +I + + Sbjct: 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV- 394 Query: 136 GFESAH----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE--NLRTDLI 188 ++A +SGG Q+ A+ ++ P +L++DEP +DV E L L+ Sbjct: 395 --KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 + ++++++ + E + + DRVLV G++ Sbjct: 453 QQGV-------AIIVISSELPEVLGLSDRVLVMHE--GKL 483 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 84.6 bits (209), Expect = 5e-17 Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 29/236 (12%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV---- 67 +EI+D+ SF G + VLD VN + I L+G SGSGKSTLLR+ L+ Sbjct: 4 IEIRDLKVSF------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57 Query: 68 -SPSSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDK--- 118 + SG+V G+ I + + +VFQ P L++ ENV LGLK + K Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117 Query: 119 --EERRKRALSAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 +ER + AL L + A ++SGG QR+ ARA P +LL DEP + L Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 D + + ++L + ++++VTH ++A + D V G+I E Sbjct: 178 DPENTAKIESLFLELKKD-----MTIVLVTHFPQQAARISDYVAFLYK--GQIVEW 226 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 84.0 bits (208), Expect = 6e-17 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 27/206 (13%) Query: 22 SLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78 SL+ +S G VL V+ + G+I+ LLG +G+GKSTL+R++ GLV+P G + Sbjct: 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---- 61 Query: 79 KKIKDPPKDISVVFQTFALFPW--LTVLENVEL--GLKAKGIDKEERRKRALSAIDLIGL 134 ++ I V Q L LTV + L G K + I +R +A ID Sbjct: 62 --KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID---- 115 Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 A ++SGG QRV ARA + P LL++DEP +DV N + L DL + Sbjct: 116 -----APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV----NGQVALYDLIDQL 166 Query: 195 RLPIE-SMLMVTHNIEEAVLMCDRVL 219 R ++ ++LMV+H++ + D VL Sbjct: 167 RRELDCAVLMVSHDLHLVMAKTDEVL 192 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 84.3 bits (209), Expect = 6e-17 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 36/234 (15%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL + + F G LL ++ VN V EIV L+G +G+GK+T+ + G P+ Sbjct: 5 LLSVSGLMMRF------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT 58 Query: 71 SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLEN--------VELG-----L 111 G +L +G+ I+ P + FQ LF +TV+EN ++ G L Sbjct: 59 GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLL 118 Query: 112 KAKGIDKEERRK--RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMD 169 K + E RA + ++ +GL + ++ G +R+ AR V P +L++D Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIE---SMLMVTHNIEEAVLMCDRVLV 220 EP + L+ + L +LI L E ++L++ H+++ + + DR+ V Sbjct: 179 EPAAGLNPKETKELD-ELIA-----ELRNEHNVTVLLIEHDMKLVMGISDRIYV 226 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 84.1 bits (208), Expect = 7e-17 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ--------VLFKGKKIKD 83 L+ ++F++ G L+G +GSGKST+ ++I GL+ P + K + D Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 Query: 84 PPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142 + + +VFQ F TV ++V GL+ + + + E K + +G+ + + Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP 141 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202 +SGG QRV A V P ++++DE S LD E + + L + L + S Sbjct: 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS-- 199 Query: 203 MVTHNIEEAVLMCDRVLVFSSNPGRI 228 +TH+I+EA M D+VLV + G++ Sbjct: 200 -ITHDIDEAN-MADQVLVL--DDGKL 221 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 84.0 bits (208), Expect = 8e-17 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 19/224 (8%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 N +++ +++ + + S L LD VN V GE + +LGR+GSGKST+ + + L+ Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60 Query: 68 SPSSGQVLFKGKKIKDPPK--DI----SVVFQTFALFP-----WLTVLENVELGLKAKGI 116 PS G+V G D DI +VFQ P V E+V G + GI Sbjct: 61 IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQN----PDNQIVATIVEEDVAFGPENLGI 116 Query: 117 DKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 EE R+R ++ +G+ + +SGG QRV A + P ++ DEP + LD Sbjct: 117 PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176 Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + + +L + + I +++TH +EEAV DR++V Sbjct: 177 PSGRREVVNTIKELNKKYGITI---ILITHYMEEAV-EADRIIV 216 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 83.7 bits (207), Expect = 9e-17 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 30/209 (14%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKI---- 81 L +N + + ++ L+G SG GKSTLLR +I G+ +G++ G+ I Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV--KITGKLTMDGEDIYGNI 76 Query: 82 --KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSAIDLI 132 D + +VFQ FP +++ ENV GL+A+GI DK+ ER R + D + Sbjct: 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 D +S H +SGG QR+ AR + P ++LMDEP SALD + T I+ + Sbjct: 136 K-DRLKS-HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA-----THKIEELM 188 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 E ++++VTH++++A + DR F Sbjct: 189 EELKKNYTIVIVTHSMQQARRISDRTAFF 217 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 83.6 bits (207), Expect = 9e-17 Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 23/208 (11%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 L+E QD+ SFS ++ VL + F + GE+V L+G SGSGKST+ ++ L Sbjct: 475 LEGLIEFQDV--SFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 Query: 68 SPSSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 P+ GQVL G + + +++V Q LF +V EN+ GL ++ Sbjct: 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAA 590 Query: 123 KRALSAIDLIGLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 +A +A D I F + + TE+ SGG QR+ ARA V P +L++DE SAL Sbjct: 591 AKAANAHDFIM--EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648 Query: 176 DV-----LTAENLRTDLIDLWIEGRLPI 198 D L R L I RL Sbjct: 649 DAECEQLLQESRSRASRTVLLIAHRLST 676 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 83.5 bits (207), Expect = 9e-17 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 41/212 (19%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIKDPPK 86 L ++ + + +G SG GKSTLLR LV G++ G+ I D Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 Query: 87 DIS-------VVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG--- 136 D++ +VFQ FP ++ ENV GL+ +GI +R L L G Sbjct: 100 DVAELRRRVGMVFQRPNPFP-KSIYENVVYGLRLQGI----NNRRVLDEAVERSLRGAAL 154 Query: 137 --------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRT 185 E+A +SGG QR+ ARA + P +LL+DEP SALD L E L T Sbjct: 155 WDEVKDRLHENA--FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT 212 Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217 +L + ++++VTHN+++A + D Sbjct: 213 ELKSKY--------TIVIVTHNMQQAARVSDY 236 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 83.6 bits (206), Expect = 9e-17 Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 15/229 (6%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 N++LE++++ F +K S ++ L+ V+F+++ GE V ++G++GSGKST R+I GL Sbjct: 2 NKILEVENLV--FKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58 Query: 69 PSSGQVLFKGKKIK-----DPPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERR 122 G+V G+ + + + I +VFQ F TV ++V G++ +GI +EE Sbjct: 59 EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMI 118 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 KR A+ + + F++ +SGG QRV A + P ++++DE S LD + Sbjct: 119 KRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + + ++ + +L ++L +TH+++EA DR+LV + G I +E Sbjct: 179 IMRVIHEIKEKYQL---TVLSITHDLDEAA-SSDRILVMKA--GEIIKE 221 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 83.2 bits (206), Expect = 1e-16 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 27/187 (14%) Query: 44 EIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDPP-------KDISVV 91 +I L+G SGSGKST LR + + ++ +GQ+L++G I K I +V Sbjct: 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMV 106 Query: 92 FQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSAIDLIGLDGFESAHTTE 144 FQ F ++ EN+ L+ G+ DK+ E + + D + D +SA T Sbjct: 107 FQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALT-- 163 Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204 +SGG QR+ ARA V P +LLMDEP SALD ++ L + +L ++++V Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-----YTIIIV 218 Query: 205 THNIEEA 211 THN+++A Sbjct: 219 THNMQQA 225 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 83.0 bits (205), Expect = 1e-16 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 25/224 (11%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLE++ I ++F G + LD ++ V GE VGL G +G+GKSTL++I++G V P Sbjct: 1 LLEMKGIVKTF------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPH 53 Query: 71 ---SGQVLFKGKKIK------DPPKDISVVFQTFALFPWLTVLENVELG----LKAKGID 117 G++ + G +K I ++ Q L P L+V EN+ LG L + Sbjct: 54 GTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMA 113 Query: 118 KEERRKRALSAIDLIGLDGFESAHTT-EISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 RA + + + LD + GG Q V A+A LL++DEP S+L Sbjct: 114 YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 E L + DL G + + ++H + E +CD + V Sbjct: 174 EKETEILLDIIRDLKAHGV----ACVYISHKLNEVKAVCDTICV 213 Score = 48.7 bits (116), Expect = 3e-06 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 22/205 (10%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFKGKK--IKDPPKDI 88 +D V+F++ GEI+G+ G G+G++ L++ + G P G V GK I++P + I Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334 Query: 89 SVVF-------QTFALFPWLTVLENVELGL-----KAKGIDKEERRKRALSAIDLIGLDG 136 + + P L V +N+ L + ID + SAI + + Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394 Query: 137 FES-AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 +SGG Q+ A+ + P +L++DEP +DV + + L EG Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220 ++++V+ + E + + DRVLV Sbjct: 455 ----AIIVVSSELAEVLGLSDRVLV 475 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 83.0 bits (205), Expect = 1e-16 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 41/210 (19%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRI---IAGLVSPSS--GQVLFKGKKIKDPPKD 87 L + ++ + L+G SG GKSTLLR + L+ G +L+ G+ I D D Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 Query: 88 -------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG---- 136 I +VFQ FP ++ ENV G + G E+ K+ L I L G Sbjct: 82 VVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG----EKNKKTLDTIVEKSLKGAALW 136 Query: 137 -------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--ENLRTD 186 +SA +SGG QR+ AR V P ++LMDEP SALD + TA E+L D Sbjct: 137 DEVKDRLHDSA--LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCD 216 L + ++++VTHN+++A + D Sbjct: 195 LKKEY--------TVIIVTHNMQQAARVSD 216 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 83.1 bits (205), Expect = 1e-16 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 14/206 (6%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP------K 86 L+ +N + GE +G++G++GSGKSTL + GL+ P G+VL G D K Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 Query: 87 DISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145 + +VFQ F TV E++ G + + E RKR A+ IGL+ + + Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTL 137 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGG Q V A + P L+ DE S LD + + + L +G+ +++ +T Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK----TIVYIT 193 Query: 206 HNIEEAVLMCDRVLVFSSNPGRIAEE 231 HN+EE + DR++V G+I E Sbjct: 194 HNLEE-LHDADRIIVMDR--GKIVLE 216 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 82.5 bits (204), Expect = 2e-16 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 57/253 (22%) Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 N I N ++ +Q++ S+ G + V ++ G++ L+G SG GKST+L Sbjct: 3 KTNKKISKNIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL 56 Query: 61 RIIA---GLVSPSS--GQVLFKGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVE 108 R + L+ S G+VLF G + DP D I +VFQ FP ++ EN+ Sbjct: 57 RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIA 115 Query: 109 LGLKAKGI--DKEERRKRAL--SAI-----DLIGLDGFESAHTTEISGGMLQRVGFARAF 159 G + G D +E +R+L +A+ D + G+ +SGG QR+ AR Sbjct: 116 FGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYS------LSGGQQQRLCIARTI 169 Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM---------LMVTHNIEE 210 + P ++LMDEP SALD ++ L IE E+M ++VTHN+++ Sbjct: 170 AIEPEVILMDEPCSALDPIST---------LKIE-----ETMHELKKNFTIVIVTHNMQQ 215 Query: 211 AVLMCDRVLVFSS 223 AV + D F++ Sbjct: 216 AVRVSDMTAFFNA 228 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 81.9 bits (203), Expect = 3e-16 Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 31/214 (14%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87 ++ V+F G+ V ++G +G+GKSTL+ ++ + P SG++L G I+ ++ Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR--KRALSAIDLI--GLDGFESAHTT 143 I+VVFQ LF ++ +N+ +G + D+E R +RA A D I DG++ Sbjct: 411 IAVVFQDAGLFN-RSIEDNIRVG-RPDATDEEMRAAAERA-QAHDFIERKPDGYD-TVVG 466 Query: 144 E----ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 E +SGG QR+ ARA + P +L++DE SALDV T ++ +D ++GR Sbjct: 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK-AALDELMKGR---- 521 Query: 200 SMLMVTH---NIEEAVLMCDRVLVFSSNPGRIAE 230 + ++ H + A DR+LVF + GR+ E Sbjct: 522 TTFIIAHRLSTVRNA----DRILVFDN--GRVVE 549 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 81.9 bits (203), Expect = 3e-16 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 39/206 (18%) Query: 11 LLEIQDICQSFSLKK--ISGNLLV--LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66 LL+ D+ + + +K+ LV LD V+F + G+ + ++G SG GKSTL R++ + Sbjct: 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64 Query: 67 VSPSSGQVLFKGKKIKDPPK--------DISVVFQT-FA-LFPWLTV---LE-----NVE 108 +P+ G++ ++G+ + I +VFQ + L P V LE N Sbjct: 65 ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS 124 Query: 109 LGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE----ISGGMLQRVGFARAFVVFPS 164 L ERR++AL+ + +GL H SGG QR+ ARA ++ P Sbjct: 125 L-------SAAERREKALAMMAKVGL---RPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174 Query: 165 LLLMDEPFSALDV-LTAE--NLRTDL 187 +++ DEP SALDV + A+ NL DL Sbjct: 175 VVVADEPVSALDVSVQAQVLNLMMDL 200 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 81.8 bits (202), Expect = 4e-16 Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 40/250 (16%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 L K G V+F++ GE++G++G SGSGKSTLL +AG ++P G + + Sbjct: 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS-- 66 Query: 83 DPPKDISVVFQT----FALFPWLTVLENVELGLK---AKGIDKEER----------RKRA 125 ++ + + W V +N GL+ + G + ER RA Sbjct: 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA 126 Query: 126 LSA-------IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 + ID +D A SGGM QR+ AR V P L+ MDEP LDV Sbjct: 127 AAHDWLEEVEIDPTRIDDLPRA----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182 Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE-----EVL 233 L L L + L ++++VTH++ A L+ R+LV GR+ E +VL Sbjct: 183 VQARLLDLLRGLVRDLGL---AVIIVTHDLGVARLLAQRLLVMQQ--GRVVESGLTDQVL 237 Query: 234 ISIPHPRNRL 243 HP +L Sbjct: 238 DDPQHPYTQL 247 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 81.5 bits (201), Expect = 4e-16 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 41/244 (16%) Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 +A +LE++D+ + G ++ ++ ++ + L+G SG GKST L Sbjct: 11 IAPFPEAKEHILEVKDLSIYY------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL 64 Query: 61 RIIAGL-----VSPSSGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVE 108 R I + + S G++L++G I D ++I +VFQ FP ++ N+ Sbjct: 65 RSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNIT 123 Query: 109 LGLKAKGIDKEERRKRALSAI-----------DLIGLDGFESAHTTEISGGMLQRVGFAR 157 LK G ERRK L I D + SA +SGG QR+ AR Sbjct: 124 HALKYAG----ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--LSLSGGQQQRLCIAR 177 Query: 158 AFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217 + P++LL+DEP SALD ++ + + +L E S+++VTHN+++A+ + DR Sbjct: 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-----YSIIIVTHNMQQALRVSDR 232 Query: 218 VLVF 221 F Sbjct: 233 TAFF 236 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 81.6 bits (201), Expect = 4e-16 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 28/226 (12%) Query: 16 DICQSFSLKKI-SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLV 67 I L KI GN + + + + EI G +G SG GKST+LR ++ G Sbjct: 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGF- 64 Query: 68 SPSSGQVLFKGKKIK----DP---PKDISVVFQTFALFPWLTVLENVELGLKA---KGID 117 G V F G+ + DP + I +VFQ F +++ +NV GL+ KG D Sbjct: 65 -RFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKG-D 121 Query: 118 KEERRKRALSAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 +R K AL L + +SGG QR+ ARA P +LL+DEP SALD Sbjct: 122 LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 + + +++L + ++ +VTHN+++A+ + D FS Sbjct: 182 PIATRRVEELMVELKKD-----YTIALVTHNMQQAIRVADTTAFFS 222 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 81.6 bits (201), Expect = 4e-16 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 28/239 (11%) Query: 15 QDICQSFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRI---IAGLVS 68 Q + + +K +S ++ ++ ++ ++ ++G SG GKST ++ I+ L Sbjct: 2 QQLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEG 61 Query: 69 PS--SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKG---- 115 P G V F G+ I DP + I +VFQ FP +++ ENV G++ Sbjct: 62 PVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQ 120 Query: 116 IDKEERRKRALSAIDLIG--LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173 D +E + AL L D + +SGG QR+ ARA + P +LLMDEP S Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKS-ALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 ALD + + + L E + I VTHN+++A + D FS++ RI + V Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAI-----VTHNMQQATRVSDFTAFFSTDESRIGQMV 233 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 81.3 bits (201), Expect = 4e-16 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 30/233 (12%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 + I D+ S+ +L ++ + ++G SGSGKSTL +++ G S Sbjct: 474 IVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528 Query: 72 GQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126 G++L G +KD + I+ + Q +F ++LEN+ LG K ++ A Sbjct: 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENV--SQDEIWAAC 585 Query: 127 SAIDL--------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 ++ +G S + ISGG QR+ ARA + +L++DE S LD + Sbjct: 586 EIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 T + + +L++ L ++++ V H + A D+++V G+I E+ Sbjct: 646 TEKKIVNNLLN------LQDKTIIFVAHRLSVAK-QSDKIIVLDH--GKIIEQ 689 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 81.2 bits (200), Expect = 5e-16 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 31/201 (15%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPP- 85 +L VN ++ + L+G SG GKST +R + + + P G + G I DP Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 Query: 86 ------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKE----ERRKRALSAIDLIG-- 133 K + +VFQ FP ++ +NV GL+ G D E ER + +L A L Sbjct: 78 DVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV 136 Query: 134 ---LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 LD +SA +SGG QR+ AR V P ++LMDEP SALD ++ + DLI Sbjct: 137 KDKLD--KSA--LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE-DLIHK 191 Query: 191 WIEGRLPIESMLMVTHNIEEA 211 E ++++VTHN+++A Sbjct: 192 LKEDY----TIVIVTHNMQQA 208 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 80.7 bits (200), Expect = 7e-16 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +L ++ + SF L+ ++ V GE+ ++G +G+GK+T++ +I G P Sbjct: 2 ILYLEGLSVSF------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55 Query: 71 SGQVLFKGKKI-KDPPKDISVV-----FQTFALFPWLTVLENVELGLKAK---------G 115 G VLF G + P I+ FQ +F LTV EN+EL L Sbjct: 56 EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115 Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171 + EE+ R ++ IGL +S G Q + + P LLL+DEP Sbjct: 116 LSAEEKD-RIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 80.1 bits (198), Expect = 9e-16 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 39/216 (18%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--P---SSGQVLFKGKKIK 82 G L +N +++ ++ +G SG GKSTLLR + P + G++L G+ I Sbjct: 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 Query: 83 DPPKDISV-------VFQTFALFPWLTVLENVELGLK-----AKGIDKEERRKRALSAID 130 P +DI++ VFQ FP +++ +N+ G++ ++ + +ER + AL+ Sbjct: 84 TPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRA-EMDERVEWALTKAA 141 Query: 131 LIGLDGFE-----SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--EN 182 L E +SGG QR+ AR + P +LL+DEP SALD + T E Sbjct: 142 LWN----EVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218 L T+L + ++++VTHN+++A D Sbjct: 198 LITELKQDY--------TVVIVTHNMQQAARCSDYT 225 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 79.9 bits (197), Expect = 1e-15 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 30/241 (12%) Query: 6 IKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65 + D+ +L ++++ F +K L+ L+ +++ +I ++G SGSGKSTL+ G Sbjct: 16 LSDDIILRVKNLYCVFD-EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 Query: 66 LVSPSSGQVLFKG------------------KKIKDPP---KDISVVFQ--TFALFPWLT 102 L+ G + KKIK+ + +S+VFQ + LF T Sbjct: 75 LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DT 133 Query: 103 VLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVV 161 + +++ G A G+ K E +K A ++ +GLD + +SGG +RV A + Sbjct: 134 IEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193 Query: 162 FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 P +L+ DEP + LD E+ LI ++ + +++ ++TH +E + + D V+V Sbjct: 194 QPEILIFDEPTAGLDP-KGEHEMMQLI---LDAKANNKTVFVITHTMEHVLEVADEVIVM 249 Query: 222 S 222 Sbjct: 250 D 250 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 79.8 bits (196), Expect = 1e-15 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 24/216 (11%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG-----------QVLFKGKK 80 VLD+V+ + + L+G +GSGK+T LR + + SG + +F + Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 Query: 81 IKDPPKDISVVFQTFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGL-DGFE 138 + + + + ++FQ FP +++++NV G++A K + ++E R A + + +GL D + Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154 Query: 139 ---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 S +SGG Q + AR V P +LL+DEP SALD T E I+ +I Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK-----IEEFIRSL 209 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++++VTHN+ +A + DR +F GR+ EE Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFD--GRLVEE 243 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 79.6 bits (196), Expect = 1e-15 Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 31/210 (14%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDPPKD 87 L+ +N + +I L+G SG GKST LR + + G+VL GK I D KD Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD--KD 77 Query: 88 ISV---------VFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAI------DL 131 + V VFQ FP +++ +NV G + GI DK+E K A+ D Sbjct: 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE 136 Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191 + D +SA ++SGG QR+ AR V P ++LMDEP SALD ++ + +++L Sbjct: 137 VKDDLKKSA--LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194 Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 E ++++VTHN+++A + D F Sbjct: 195 KE-----YTIVIVTHNMQQASRVSDYTAFF 219 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 79.3 bits (195), Expect = 2e-15 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 24/204 (11%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPPKD--- 87 V+ + + ++G SG GKST+LR I + + PS +G++L I D D Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 Query: 88 ----ISVVFQTFALFPWLTVLENVELGLKAKG-IDKEERRKRALSAIDLIGL-----DGF 137 + +VFQ FP +++ +NV G K G +++ E + S++ + L D Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +S + E+SGG QR+ AR V P ++LMDEP SALD ++ T I+ IE Sbjct: 143 KS-NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS-----TLKIEELIEELKE 196 Query: 198 IESMLMVTHNIEEAVLMCDRVLVF 221 ++++VTHN+++A + D F Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFF 220 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 79.1 bits (195), Expect = 2e-15 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 39/222 (17%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82 G+ L + V ++ +I +G SG GKST+LR L + P G+V F GK + Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80 Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAI---- 129 P D I +VFQ FP ++ +N+ G + G D +E +R+L Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWD 139 Query: 130 ---DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENL 183 D + G +SGG QR+ ARA V P ++LMDEP SALD L E L Sbjct: 140 EVKDKLKQSGLS------LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNP 225 +L + + ++++VTHN+++A + D F+ Sbjct: 194 MHELKEQY--------TIIIVTHNMQQAARVSDMTAFFNVEL 227 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 78.8 bits (194), Expect = 2e-15 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 L+ ++F V GEIVG++G +GSGKSTL +IAG+ P+ G V KG +++ Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA--------ALIA 91 Query: 93 QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152 + L LT +EN+EL G+ KE+ ++ I+ + F S GM R Sbjct: 92 ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSR 151 Query: 153 VGFARAFVVFPSLLLMDEPFSALD 176 +GFA + + P +L++DE S D Sbjct: 152 LGFAISVHINPDILVIDEALSVGD 175 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 78.7 bits (194), Expect = 2e-15 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 26/239 (10%) Query: 11 LLEIQDICQSFSLK-----KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65 +L+++++ F L+ +++ + ++KV+F++ GE + L+G SGSGKST R + Sbjct: 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 Query: 66 LVSPSSGQVLFKGKKIKDPP--------KDISVVFQT--FALFPWLTVLENVELGLKAKG 115 LV G+++F G++I +DI +FQ +L P TV +++ L+ G Sbjct: 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG 432 Query: 116 I-DKEERRKRALSAIDLIGLDGFESA--HTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172 + + R ++ +GL E A + E SGG QR+ ARA + P +++ DE Sbjct: 433 LLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491 Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 SALDV ++R +I+L ++ + + L ++H++ + RV V G+I E Sbjct: 492 SALDV----SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM--YLGQIVE 544 Score = 59.1 bits (143), Expect = 2e-09 Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 42/217 (19%) Query: 36 VNFNVSSGEIVGLLGRSGSGKS----TLLRII---AGLVSPSSGQVLF--KGKKIKDPPK 86 ++F++ GE + ++G SGSGKS L+R++ GLV ++L + +++ + + Sbjct: 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ--CDKMLLRRRSRQVIELSE 92 Query: 87 ------------DISVVFQ--TFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDL 131 D++++FQ +L P TV E + ++ +G +EE A +D Sbjct: 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQ 152 Query: 132 IGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDL 187 + + + S + ++SGGM QRV A A P++L+ DEP +ALDV + A+ L+ L Sbjct: 153 VRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--L 210 Query: 188 IDLWIEGRLPIESMLM----VTHNIEEAVLMCDRVLV 220 I ++ + M M +TH++ + DRVLV Sbjct: 211 I------KVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 78.9 bits (194), Expect = 3e-15 Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKK 80 G L L V+ + + +I+ +G SG GKSTLLR +I G + G++L++ + Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG--AKVEGRLLYRDRN 88 Query: 81 IKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKG----IDK--EERRKRALS 127 I D + + +VFQ FP ++ EN+ +A G +D+ E+ +RA Sbjct: 89 IYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRA-- 145 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 AI D + T +SGG QR+ ARA + P +LLMDEP SALD ++ + Sbjct: 146 AIWEEVKDKLK-EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC 204 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223 ++L + +++MVTHN+++A + D F++ Sbjct: 205 LELKEQ-----YTIIMVTHNMQQASRVADWTAFFNT 235 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 78.5 bits (193), Expect = 3e-15 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS-----GQVLFKGKKIKDPP- 85 +L+ V+ + ++ ++G SG GKST L+ + + S G+V F + I + Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 Query: 86 ------KDISVVFQTFALFPWLTVLENVELGLKAKG----IDKEERRKRALSAIDL---I 132 + +S+V LFP ++V +NV G+K G ++ ++ + AL DL I Sbjct: 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 +SA ++SGG QR+ ARA V P +LLMDEP LD + + + + + L + Sbjct: 141 KHKIHKSA--LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 L +M++V+HN+ + + D F N RI + V Sbjct: 199 RSEL---TMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 78.4 bits (193), Expect = 4e-15 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 37/213 (17%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--PS---SGQVLFKGKKIKDPP-- 85 L +N ++ E+ ++G SG GKST ++ + +V PS +G++L++ + I D Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 Query: 86 -----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF--- 137 ++ +VFQ FP ++ +NV G K GI + K+ L I L G Sbjct: 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI----KDKKTLDEIVEKSLRGAAIW 154 Query: 138 ----ESAHTTE--ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRTDLI 188 + H +SGG QR+ AR + P ++LMDEP SALD L E L +L Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + S+++VTHN+++A + D+ F Sbjct: 215 KDY--------SIIIVTHNMQQAARISDKTAFF 239 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 78.3 bits (193), Expect = 4e-15 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 23/209 (11%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV-----SPSSGQVLFKGKKIK 82 G+ V+ V+ + + L+G SG GKSTLLR L+ + G+V G+ I Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDK-----EERRKRALSAID 130 P +++ +VFQ FP LT+ +NV +G+K G+ K +ER + AL Sbjct: 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA 134 Query: 131 LIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189 L + + + + +SGG QR+ ARA + P +LLMDEP + +D + + L + Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194 Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRV 218 L E ++++VTH+ +A + D V Sbjct: 195 LKKE-----YTIVLVTHSPAQAARVSDYV 218 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 78.1 bits (192), Expect = 4e-15 Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 20/219 (9%) Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL---VSPSSGQ 73 I ++ +L G L +N + +I L+G SG GKST LR + ++ G Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61 Query: 74 VLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 V +GK +K+ K++ +VFQ +F ++ EN+ K G+ K + + AL Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVV 120 Query: 129 IDLIGLDGFESA------HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 L + FE + +SGG QR+ ARA + P LLL+DEP SALD ++ Sbjct: 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS--- 177 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + +I+ ++ SM+MVTHN+++ + D F Sbjct: 178 --SGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFF 214 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 78.1 bits (192), Expect = 4e-15 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 35/267 (13%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------- 76 KK L+ + ++ ++G +GSGKST++++ GL+ +GQ + Sbjct: 18 KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPA 77 Query: 77 ---KGKKIKDPPKDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131 K K++K K+I +VFQ + LF T+ +++ G G +K+E K+ + L Sbjct: 78 NLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKL 136 Query: 132 IGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + L + + E+SGG +RV A + + L++DEP LD E D I+L Sbjct: 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEE----DFINL 192 Query: 191 WIEGRLPIE---SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLS-PE 246 + RL E ++MVTHN+++ + + D V+V + E +ISI P S E Sbjct: 193 FE--RLNKEYKKRIIMVTHNMDQVLRIADEVIV-------MHEGKVISIGSPFEIFSNQE 243 Query: 247 FRQIVE----KIYALMTKKEEKRLNPL 269 +E K+Y LM K + K ++ L Sbjct: 244 LLTKIEIDPPKLYQLMYKLKNKGIDLL 270 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 78.0 bits (192), Expect = 5e-15 Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 14/193 (7%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--ISV 90 L +F V G I L+G +GSGKSTL + + G V +SG++ G+ + + ++ Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 Query: 91 VFQTFAL---FPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 V Q+ + FP L V + V +G + K+ R+ +A+ + + F Sbjct: 83 VPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG 141 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203 E+SGG +RV ARA ++L+DEPF+ +DV T + + L +L EG+ +ML+ Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK----TMLV 197 Query: 204 VTHNIEEAVLMCD 216 THN+ CD Sbjct: 198 STHNLGSVTEFCD 210 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 77.7 bits (192), Expect = 6e-15 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 24/223 (10%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL+++ I ++F K L NV G ++ L+G +G+GKST+++++ G+ + Sbjct: 4 LLQLKGIDKAFPGVK------ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD 57 Query: 71 SGQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAK----GIDKEE 120 +G +L+ GK++ + PK I ++ Q L P LT+ EN+ LG + ID ++ Sbjct: 58 AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKK 117 Query: 121 RRKRALSAIDLIGLDGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 A + + L S+ E+S G Q V A+ +++MDEP AL Sbjct: 118 MYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 E+L + +L +GR ++ ++H ++E +CD V VF Sbjct: 176 ETESLFRVIRELKSQGR----GIVYISHRLKEIFEICDDVTVF 214 Score = 58.1 bits (141), Expect = 4e-09 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 42/225 (18%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-DPPKD---- 87 ++ V+F + GEI+G+ G G+G++ L++++ G + +SG V G ++ P+D Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 Query: 88 ----ISVVFQTFALFPWLTVLENV------ELGLKAKGIDKEERRKRALSAIDL------ 131 IS + L ++V EN+ + + ++ I L Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387 Query: 132 -----IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 IGL +SGG Q+V AR + P +L++DEP +DV A+ Sbjct: 388 SMEQAIGL----------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV-GAKKEIYQ 436 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 LI+ + L S+++V+ + E + M DR+LV GRI+ E Sbjct: 437 LINQFKAEGL---SIILVSSEMPEVLGMSDRILVMHE--GRISGE 476 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 77.1 bits (190), Expect = 8e-15 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 12/207 (5%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP 85 L V+FN+ G+ ++G +GSGKST+ +++ G+ SG++ + + I + Sbjct: 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR 82 Query: 86 KDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE 144 K I +VFQ F V +V GL+ + +E +R A+ + + Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142 Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204 +SGG QRV A + PS++++DE S LD +NL + + E + I S + Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS---I 199 Query: 205 THNIEEAVLMCDRVLVFSSNPGRIAEE 231 TH++ EA + D V+V N G + +E Sbjct: 200 THDLSEA-MEADHVIVM--NKGTVYKE 223 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 76.7 bits (189), Expect = 1e-14 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 20/209 (9%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKD 87 L ++ ++ G LLG +G+GKSTLL + G+ P G+V G+++ K Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 Query: 88 ISVVF-----QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142 + +VF Q F+ TV ++V G G+DK+E +R A+ + + F Sbjct: 81 VGLVFQDPDDQVFS----STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202 +S G +RV A + P ++++DEP + LD E L L L +G+ +++ Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK----TVI 192 Query: 203 MVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + TH+++ A D+V+V GR+ E Sbjct: 193 VATHDVDLAAEWADQVIVLKE--GRVLAE 219 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 76.8 bits (189), Expect = 1e-14 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 18/221 (8%) Query: 21 FSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK 77 S K+S G + L +V+ +++ GEIV L+G +G+GK+TLL + G +SG+++F Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65 Query: 78 GKKIKDPP------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131 GK I D + +++V + +F +TV EN+ +G ++++ ++R +L Sbjct: 66 GKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG--GFFAERDQFQERIKWVYEL 123 Query: 132 IG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 L +SGG Q + RA + P LLL+DEP L + + + + L Sbjct: 124 FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +G ++ +V N +A+ + DR V + G + E Sbjct: 184 REQGM----TIFLVEQNANQALKLADRGYVLEN--GHVVLE 218 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 76.3 bits (188), Expect = 1e-14 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 36/213 (16%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKIKDPP 85 L V+ ++ + +G SG GKST LR I G +G++ G+ I DP Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG--CRVTGKITLDGEDIYDPR 92 Query: 86 KD-------ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAIDLIGL-- 134 D + +VFQ FP ++ ENV G + G+ K E + +++ GL Sbjct: 93 LDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWE 151 Query: 135 ---DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--ENLRTDLI 188 D T +SGG QR+ ARA V P ++LMDEP SALD + TA E L +L Sbjct: 152 EVKDRLHEPGTG-LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR 210 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + ++++VTH++++A + R F Sbjct: 211 QNY--------TIVIVTHSMQQAARVSQRTAFF 235 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 76.2 bits (187), Expect = 1e-14 Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 31/219 (14%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKIKDPP 85 L+ +N + I L+G SG GKST LR ++ G+ G V+++GK I Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGI--KIEGNVIYEGKNIYSNN 80 Query: 86 KD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG----- 133 D I +VFQT F +++ +N+ G K G K++++ + L Sbjct: 81 FDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGT-KDKKKLDEIVEQSLKKSALWN 138 Query: 134 -LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 + + + +SGG QR+ AR + P+++LMDEP SALD ++ + +I+L Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-- 196 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++++VTHN+++A + DR F + G I EE Sbjct: 197 ---KESYTIIIVTHNMQQAGRISDRTAFFLN--GCIEEE 230 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 76.0 bits (187), Expect = 2e-14 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 12/186 (6%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 LD ++ G+++GL+G +GSGKSTL II G +SP+ G+V G ++SV+ Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--------EVSVIA 91 Query: 93 QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152 + L LT +EN+E + G ++E + I+ L F + S GM + Sbjct: 92 ISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151 Query: 153 VGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAV 212 +GF+ V P +L++DE S D + +D E + +++ V+HN+ + Sbjct: 152 LGFSINITVNPDILVIDEALSVGD----QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207 Query: 213 LMCDRV 218 C ++ Sbjct: 208 QFCTKI 213 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 75.5 bits (186), Expect = 2e-14 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 19/214 (8%) Query: 16 DICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75 +I +SF K LD VN V I L+G +G+GKSTLL+ + G+ SG +L Sbjct: 3 NISKSFPGVK------ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL 56 Query: 76 FKGKKI-----KDPPKD-ISVVFQTFALFPWLTVLENVELG---LKAKGIDKEERRKRAL 126 F+GK+I K+ ++ IS+V Q L +V++N+ LG K +D+++ + Sbjct: 57 FQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK 116 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 + D + +D A +S +Q + A+AF +++MDEP S+L +L T Sbjct: 117 AIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + L G ++ ++H +EE +CD + + Sbjct: 177 IRKLKERGC----GIVYISHKMEEIFQLCDEITI 206 Score = 49.0 bits (117), Expect = 2e-06 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 32/218 (14%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPPKDISVVFQ 93 V+F++ GEI+G+ G G+ ++ ++ + G+ S+G + GKKI + + I+ Sbjct: 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN---H 323 Query: 94 TFAL----------FPWLTV-----LENVELGLKAKGIDKEERRKRALS-AIDLIGLDGF 137 FAL + +L + + N+ G+ R K ID + + Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK-- 381 Query: 138 ESAHTTEI---SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 H T+I SGG Q+V R + P +L++DEP +DV + + +L + Sbjct: 382 TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD 441 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 + +++++ + E + + DR+LV S+ G +A V Sbjct: 442 K----GIIIISSEMPELLGITDRILVMSN--GLVAGIV 473 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 75.4 bits (185), Expect = 3e-14 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 25/208 (12%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLF--KGKK 80 G L +N V ++ L+G SG GKST LR + + P + G+++ Sbjct: 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 Query: 81 IKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDK----EERRKRALSAI 129 I P D IS+VFQ FP ++ ENV GL+ +G+ + EER + AL Sbjct: 87 ILSPEVDPIEVRMRISMVFQKPNPFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNA 145 Query: 130 DLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 L + +SGG QR+ ARA P +LL DEP SALD + ++ + Sbjct: 146 ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCD 216 DL + ++ I L+VTHN+++A + D Sbjct: 206 DL--KNKVTI---LIVTHNMQQAARVSD 228 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 74.7 bits (184), Expect = 4e-14 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 19/207 (9%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPK 86 G +L+ ++ ++ +G+I L+G +G GKSTLL+ A L++P SG V K I + Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72 Query: 87 DISVVFQTFALFPW-------LTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLD 135 ++ + AL P +TV E V G L G E R A++ ++ Sbjct: 73 QLA---RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN 129 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 T++SGG QR A ++L+DEP + LD+ N + +L+ L E Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI----NHQVELMRLMRELN 185 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFS 222 ++++ V H++ +A CD ++V + Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLA 212 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 74.6 bits (183), Expect = 5e-14 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 29/209 (13%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKI------ 81 L +N ++ E+ ++G SG GKST ++ + ++ +G++ + G I Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 Query: 82 -KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL-DGFE 138 + K+I +VFQ FP ++ +NV G + G +K++ ++ ++ + L D + Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK 146 Query: 139 ---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRTDLIDLWI 192 +SGG QR+ ARA P +LLMDEP SALD E L L + + Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY- 205 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 ++++VTHN+++A + D+ F Sbjct: 206 -------TIVIVTHNMQQAARVSDQTAFF 227 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 74.5 bits (183), Expect = 5e-14 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 11/154 (7%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKDISV 90 V+F +G+ V ++G +G+GK+TL+ ++ + P+ GQ+L G I + K I+ Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 Query: 91 VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAHTTEI 145 VFQ LF ++ EN+ LG + ++ +A +A D I G D + Sbjct: 414 VFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 SGG QR+ ARA + +L++DE SALDV T Sbjct: 473 SGGERQRLAIARAILKNAPILVLDEATSALDVET 506 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 74.2 bits (182), Expect = 6e-14 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 31/215 (14%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82 G + KVN ++ S + ++G SG GKST LR I + + PS +G ++F G+ I Sbjct: 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSA 128 D I +VFQ FP ++ +N+ G + GI DK+ E+ R + Sbjct: 110 GKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL 168 Query: 129 IDLIG--LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 D + LD + +SGG QR+ AR V P +LL+DEP SALD + D Sbjct: 169 WDEVSDRLD----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-D 223 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 LI + G I ++VTHN+++A + D + F Sbjct: 224 LIQ-ELRGSYTI---MIVTHNMQQASRVSDYTMFF 254 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 74.2 bits (183), Expect = 7e-14 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 36/202 (17%) Query: 22 SLKKISGNLL------VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75 SL I G L +LD ++ E V L+GR+G+GKSTL++I+ G V G+++ Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61 Query: 76 FKGKKI-----KDPPKDIS-VVF---------QTFALFPWLTVLENVELGLKAKGIDKEE 120 ++ I +DPP+++ V+ Q L + + VE K +++ Sbjct: 62 YEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELA 121 Query: 121 R-------------RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLL 167 + R + +GLD A + +SGG L++ RA V P +LL Sbjct: 122 KLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLL 179 Query: 168 MDEPFSALDVLTAENLRTDLID 189 +DEP + LD+ T E L L Sbjct: 180 LDEPTNHLDIETIEWLEGFLKT 201 Score = 42.6 bits (101), Expect = 2e-04 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 47/223 (21%) Query: 26 ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP 85 I G LV D + V G+ + L+G +G GK+TLL+++ G + SG++ G K+ Sbjct: 329 IDGKQLVKD-FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKL---- 382 Query: 86 KDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERR------------KRALSAIDLI 132 +++ Q A L P TV++N+ G + ++ R KRA++ + Sbjct: 383 -EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPV--- 438 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 +SGG R+ AR F+ +LL++DEP + LDV T E L +L+D + Sbjct: 439 ----------KALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE-LLEELLDSY- 486 Query: 193 EGRLPIESMLMVTHN---IEEAVLMCDRVLVFSSNPGRIAEEV 232 +G + L+V+H+ ++ V C +F N G+I V Sbjct: 487 QGTV-----LLVSHDRQFVDNTVTEC---WIFEGN-GKIGRYV 520 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 72.8 bits (179), Expect = 2e-13 Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKS----TLLRIIA 64 + +E+++I + ++ V+ + G ++ L+G SGSGKS L I+ Sbjct: 2 PQQIELRNIA-------LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54 Query: 65 GLVSPSSGQVLFKGKKI---KDPPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKE 119 V ++G+VL GK + + I+ + Q A P T+ + A G K Sbjct: 55 AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG--KP 112 Query: 120 ERRKRALSAIDLIGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 +A++ +GL+ + E+SGGMLQR+ A A + ++ DEP + LD Sbjct: 113 ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 V+ A+ DL++ ++ R ML+VTH++ + D V V S GRI E Sbjct: 173 VV-AQARILDLLESIVQKRAL--GMLLVTHDMGVVARLADDVAVMSH--GRIVE 221 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 72.2 bits (177), Expect = 2e-13 Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 5/147 (3%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPPKDIS 89 V ++F+V +GE + + G +G+GK+TLLR++AGL+ SGQ+ GK D + ++ Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85 Query: 90 VVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149 + L L+ LEN+ G+ ++ SA+ ++GL G+E ++S G Sbjct: 86 YLGHLPGLKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ 142 Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALD 176 +R+ AR ++ L L+DEP++ LD Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLD 169 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 72.1 bits (176), Expect = 3e-13 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 31/237 (13%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKG-----K 79 VL +N ++ ++ +G SG GKST LR +I G + G++ F G K Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG--TSHEGEIYFLGTNTRSK 154 Query: 80 KIK--DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKE-------ERRKRALSAID 130 KI + I +VFQ F +++ +NV G + GI+ E+ ++ + D Sbjct: 155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + D ++ + +SGG QR+ ARA + P +LLMDEP SALD + + +++L Sbjct: 214 EVKDDLDKAGNA--LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEF 247 + S+++VTH++ +A + D + F A E HP+N+ + ++ Sbjct: 272 KKK-----YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 71.6 bits (176), Expect = 4e-13 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87 L +NF + +G+ V L+GRSGSGKST+ ++ G++L G ++D Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKE-ERRKRALSAIDLI-----GLDGFESAH 141 +++V Q LF T+ N+ + ++ E R A+D I GLD + Sbjct: 419 VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 +SGG QR+ ARA + +L++DE SALD Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 71.4 bits (175), Expect = 4e-13 Identities = 45/167 (26%), Positives = 96/167 (57%), Gaps = 13/167 (7%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKDISV 90 ++F + G+ + ++G +GSGKSTL +++AG++ P+SG++L + + I + Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91 Query: 91 VFQ--TFALFPWLTVLENVELGLKAK-GIDKEERRKRALSAIDLIGL-DGFESAHTTEIS 146 +FQ + +L P + + ++ L+ ++ E+R K+ + + +GL S + ++ Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLA 151 Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193 G QR+G ARA ++ P +++ DE ++LD+ ++R+ LI+L +E Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDM----SMRSQLINLMLE 194 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 70.6 bits (174), Expect = 7e-13 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 25/212 (11%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 D L + ++ ++ VL ++ + +GE V LLGR+G GKSTLL+++ Sbjct: 335 DQVSLTLNNVSFTYP----DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 Query: 68 SPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 P G++L G+ I D + ISVV Q LF T+ +N+ L +E Sbjct: 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPNAS---DEAL 446 Query: 123 KRALSAIDL-------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 L + L GL+ + ++SGG +R+G ARA + LLL+DEP L Sbjct: 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHN 207 D T E +L+ + + ++LM+TH Sbjct: 507 DAET-ERQILELLAEHAQNK----TVLMITHR 533 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 70.6 bits (173), Expect = 8e-13 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 23/216 (10%) Query: 20 SFSLKKIS----GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75 +F+L+ +S G L L ++ +G++ GL+G +GSGKSTLL+++ PS G++L Sbjct: 11 TFALRNVSFRVPGRTL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 Query: 76 FKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGL----KAKGIDKEERRKRAL 126 + + K + ++ + Q +TV E V +G A G R++ Sbjct: 70 LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 AI L+GL +SGG QR A LL+DEP SALD+ + D Sbjct: 130 EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH----QVD 185 Query: 187 LIDLWIEGRLPIE---SMLMVTHNIEEAVLMCDRVL 219 ++ L + RL E +++ V H+I A CD ++ Sbjct: 186 VLAL-VH-RLSQERGLTVIAVLHDINMAARYCDYLV 219 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 70.2 bits (172), Expect = 1e-12 Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 38/262 (14%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86 VL ++F +S E VG++GR+G+GKS++L + +V G++L G I D K Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141 + ++ Q LF TV N++ + D E +RA D+I GLD S Sbjct: 1314 VLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERA-HLKDVIRRNSLGLDAEVSEA 1371 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD-LIDLWIEGRLPIES 200 S G Q + ARA + +L++DE +A+DV RTD LI I + Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV------RTDALIQKTIREEFKSCT 1425 Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE---FRQIV------ 251 ML++ H + ++ CDR+LV + GR+ E P N LS E F ++V Sbjct: 1426 MLIIAHRL-NTIIDCDRILVLDA--GRVVE-----FDTPENLLSNEGSAFSKMVQSTGAA 1477 Query: 252 --EKIYALMTKKEEKRLNPLEN 271 + + +L+ +E RL E+ Sbjct: 1478 NAQYLRSLVFGGDEDRLAREES 1499 Score = 52.4 bits (126), Expect = 2e-07 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 22/153 (14%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP-SSGQVLFKGKKIKDPPKDISVV 91 L +N +V G +V ++G +G GK++L+ + G + P S V+ +G P +S + Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP--QVSWI 690 Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI----DLIGLDGFESAHTTE--- 144 F TV +N+ G ER +RA+ DL L G + E Sbjct: 691 FNA-------TVRDNILFGSPFD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739 Query: 145 -ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 ISGG QRV ARA + + D+P SALD Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 70.0 bits (172), Expect = 1e-12 Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 19/178 (10%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 ++++E +++ + F G+ L++D ++F + G IVG++G +G+GKSTL R+I G Sbjct: 320 DKVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373 Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-L 126 P SG + G+ +K ++ V Q+ AL P TV E + GL + K E RA + Sbjct: 374 PDSGTIKI-GETVK-----LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 + G D + ++SGG RV A+ ++LL+DEP + LDV E LR Sbjct: 428 GRFNFKGSD--QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV---ETLR 480 Score = 67.6 bits (166), Expect = 6e-12 Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 64/240 (26%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83 K + +L ++ + G +G+LG +G+GKSTLLRI+AG+ +G+ Sbjct: 12 KVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR-------- 63 Query: 84 PPKDISVVF--QTFALFPWLTVLENVELGLK-----------------------AKGIDK 118 P I V + Q L P TV ENVE G+ + + Sbjct: 64 PAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123 Query: 119 EERRKRALSAIDLIGLDGF------------ESAHTTEISGGMLQRVGFARAFVVFPSLL 166 + + + A D LD A T++SGG +RV R + P +L Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183 Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE---SMLMVTH------NIEEAVLMCDR 217 L+DEP + LD AE++ W+E L E +++ VTH N+ +L DR Sbjct: 184 LLDEPTNHLD---AESV------AWLEQHL-QEYPGTVVAVTHDRYFLDNVAGWILELDR 233 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 69.7 bits (171), Expect = 2e-12 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 28/187 (14%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 L+ VNF + G+++G+ G +GSGKSTLL +I S G + F + D Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 Query: 88 -ISVVFQTFALFPWLTVLENVELGL-KAKGIDKEERRKRALSAIDLIGL-DGFESAHTTE 144 ++VV QT LF TV N+ LG A + E + A D++ L G++ TE Sbjct: 390 RLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD----TE 444 Query: 145 I-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA----ENLRTDLIDLWIE 193 + SGG QR+ ARA ++ +L++D+ SA+D T NLR W E Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ-----WGE 499 Query: 194 GRLPIES 200 GR I S Sbjct: 500 GRTVIIS 506 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 69.3 bits (170), Expect = 2e-12 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 24/163 (14%) Query: 39 NVS----SGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGKKI-KDPPKDISV 90 NVS GE++ ++G SG+GK+TL+ +A SG VL G I + IS Sbjct: 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA 102 Query: 91 VFQTFALF-PWLTVLENV----ELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT--- 142 Q LF P LTV E++ L + + + K+E+R+R + +GL + A+T Sbjct: 103 YVQQDDLFIPTLTVREHLMFQAHLRMPRR-VTKKEKRERVDEVLQALGL--RKCANTRIG 159 Query: 143 -----TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 +SGG +R+ FA + P LL DEP S LD A Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 68.8 bits (169), Expect = 2e-12 Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 42/168 (25%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD------------ 83 ++ V +GEI+ L+G +G+GKSTLL +AGL P SG + F G+ ++ Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73 Query: 84 -----PPKDISVVFQTFALF-PWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGLDG 136 P VFQ L P T E V AL+ + + +GLD Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA---------------SALNEVAEALGLDD 118 Query: 137 FESAHTTEISGGMLQRVGFARAFV-VFPS------LLLMDEPFSALDV 177 ++SGG QRV A + V+P LLL+DEP ++LDV Sbjct: 119 KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 68.3 bits (168), Expect = 4e-12 Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 24/211 (11%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87 +NF + +G+ + L+G SG+GK++LL + G + P G + G ++++ K Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH 424 Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEE-----RRKRALSAIDLI--GLDGFESA 140 +S V Q L T+ +NV LG E+ + L+ GLD Sbjct: 425 LSWVGQNPQLPHG-TLRDNVLLG--NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 +S G QR+ ARA + LLL+DEP ++LD + + + L ++ Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----QT 536 Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 LMVTH +E+ + D++ V G+I ++ Sbjct: 537 TLMVTHQLED-LAQWDQIWVMQD--GQIVQQ 564 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 68.4 bits (168), Expect = 4e-12 Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 40/243 (16%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG--LVSP 69 L+I+D+ S K+I L VN V GEI ++G +GSGKSTL + IAG Sbjct: 1 LKIKDLHVSVEDKEI------LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV 54 Query: 70 SSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK 123 +SG +LFKG+ + + D + + FQ P ++ LE + L A+ + R + Sbjct: 55 TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---RSARGE 111 Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQR---VGFA----------RAFVVFPSLLLMDE 170 L +D + L + L R GF+ + ++ P L ++DE Sbjct: 112 EPLDLLDFLKLLK-AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE 170 Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHN--IEEAVLMCDRVLVFSSNPGRI 228 S LD+ A + + I+ R P S L++TH + + D V V GRI Sbjct: 171 IDSGLDI-DALKIVAEGINRL---REPDRSFLIITHYQRLLNY-IKPDYVHVLLD--GRI 223 Query: 229 AEE 231 + Sbjct: 224 VKS 226 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 67.9 bits (166), Expect = 5e-12 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 30/218 (13%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKD 83 + VN G+ ++G++GSGKSTL++ I L+ P++G V K K I+ Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 Query: 84 PPKDISVVFQTFALFPWLTVLEN-----VELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 K I +VFQ FP + E+ + G K ++ +E + A L+ GF Sbjct: 83 VRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH---RLLMDLGFS 135 Query: 139 ----SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 S ++SGG ++++ + P ++++DEP + LD + + L L + Sbjct: 136 RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 +++++V+H++ E D V+V G I + Sbjct: 196 N---KTIILVSHDMNEVARYADEVIVM--KEGSIVSQT 228 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 67.8 bits (165), Expect = 6e-12 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 33/207 (15%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIKDPPK 86 VL +N + +I ++G SG GKSTLLR + +VS + G VL + I P Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 Query: 87 DI-------SVVFQTFALFPWLTVLENVELGLKAKGIDKE-------ERRKRALSAIDLI 132 D+ +VFQ FP ++ +NV G + G + E+ R + D + Sbjct: 79 DVVNLRKRVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTDLID 189 + +S +SGG QR+ AR + P ++LMDEP SALD ++ E L +L Sbjct: 138 KDNLHKSG--LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195 Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCD 216 + ++ +VTHN+++A D Sbjct: 196 NY--------TIAIVTHNMQQAARASD 214 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 67.7 bits (165), Expect = 6e-12 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 8/153 (5%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK----- 86 VL +N + S + GL+G +G GKSTL ++GL+ P G VL++GK + + Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75 Query: 87 --DISVVFQTFALFPWLTVLE-NVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 ++ VFQ + T ++ ++ L+ G+ + E +R A+ L+ F Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 +S G +RV A A V+ LL+DEP + LD Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 67.6 bits (165), Expect = 6e-12 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 50/234 (21%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDP--- 84 L V+ ++ + L+G SG GKST LR + + + G V G+ I Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 Query: 85 ----PKDISVVFQTFALFPWLTVLENV----------ELGLKAK--GIDKEERR----KR 124 K + +VFQ+ FP ++ EN+ GL A+ G D ++ +R Sbjct: 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER 179 Query: 125 ALSAIDLIG-----LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VL 178 +L L LD + +SGG QR+ AR V P ++LMDEP SALD + Sbjct: 180 SLRQAALWDEVNDRLDD----NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235 Query: 179 TA--ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 T+ E+L +L + + ++++VTHN+++A + D+ VF + G + E Sbjct: 236 TSKIEDLIEELAEEY--------TVVVVTHNMQQAARISDQTAVFLTG-GELVE 280 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 67.3 bits (164), Expect = 6e-12 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 24/206 (11%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIK 82 G L V+ + + L+G SG GKST +R + L+ G+V +G+ I Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL- 134 +P K++ +VFQ FP +++ +NV G + G +K++ +A+ L Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALW 141 Query: 135 ----DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 D +S +SGG QR+ AR V P ++L DEP SALD ++ + +++L Sbjct: 142 DETSDRLKSP-ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCD 216 + ++++VTHN+++A + D Sbjct: 201 KKD-----YTIVIVTHNMQQAARISD 221 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 67.2 bits (164), Expect = 8e-12 Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 38/242 (15%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--------SGQVLFKGKKIK- 82 +L ++ + G + LLGR+G+GKSTLL+ +AG ++ +G V G+ + Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 Query: 83 -DPPK--DISVVFQTFA--LFPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIG 133 D P+ + V A F + + E V LG + G + A A+ L G Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAF-SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134 Query: 134 LDGFESAHTTEISGGMLQRVGFARAF---------VVFPSLLLMDEPFSALDVLTAENLR 184 T +SGG L RV FAR P LL+DEP +ALD+ L Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194 Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLS 244 + L + L +L + H+ A DR+ + +A+ +++ P + L+ Sbjct: 195 DTVRRLARDWNL---GVLAIVHDPNLAARHADRIAM-------LADGAIVAHGAPADVLT 244 Query: 245 PE 246 P Sbjct: 245 PA 246 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 66.5 bits (162), Expect = 1e-11 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 19/166 (11%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP----PK 86 +L +++F++ +G ++ L G +G+GK+TLL++IAGL++P G++LF+ + IK K Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 Query: 87 DISVVFQTFALFPWLTVLENVELGLK----AKGIDKEERRKRALSAIDL-IGLDGFESAH 141 + V + P+LT+ EN + A GI + R ID GL Sbjct: 75 QLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGL------- 127 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 +S G ++V R ++ L L+DEP ALD L+ + T + Sbjct: 128 ---LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 64.2 bits (156), Expect = 6e-11 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 27/163 (16%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 VL ++F + G+++ + G +GSGKS+LL +I G + PS G++ G+ IS Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------ISFS 492 Query: 92 FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFESAHTT---- 143 Q W+ T+ +N+ GL E R + A L + F T Sbjct: 493 PQ----TSWIMPGTIKDNIIFGLSY----DEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544 Query: 144 ---EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 +SGG R+ ARA L L+D PF+ LDV+T + + Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 Score = 50.7 bits (121), Expect = 7e-07 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 27/220 (12%) Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78 Q + K VL ++F+V G+ VGLLGR+GSGKSTLL + L+S + G++ G Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG 1279 Query: 79 ------------KKIKDPPKDISVVFQTFA--LFPWLTVLENVELGLKAKGIDKEERRKR 124 K P+ + + TF L P+ + E+ A+ + + ++ Sbjct: 1280 VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQ 1338 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 +D + +DG +S G Q + AR+ + +LL+DEP + LD +T + +R Sbjct: 1339 FPDKLDFVLVDG-----GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR 1393 Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 L + ++++ H + EA+L C + LV + Sbjct: 1394 KTLKQSFSNC-----TVILSEHRV-EALLECQQFLVIEGS 1427 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 63.8 bits (155), Expect = 9e-11 Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD----- 87 L ++ ++ G+IV ++G +G GKSTL ++ GL P G++L G + +D Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISG 147 S +F F LF L + E +D ++ + L D + ++ + TT +S Sbjct: 418 FSAIFADFHLFDDLIGPDEGE----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI-DLWIEGRLPIESMLMVTH 206 G +R+ A++ +LL DE + D +L+ DL +G+ ++++++H Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK----TIIIISH 529 Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEEV 232 + ++ + D+++ ++ G I ++ Sbjct: 530 D-DQYFELADQIIKLAA--GCIVKDT 552 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 62.5 bits (152), Expect = 2e-10 Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 30/190 (15%) Query: 22 SLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV-LFK 77 ++K+S G+ ++LD + N+ G +GLLGR+G+GKSTL++++AG ++P SG++ L K Sbjct: 314 KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK 373 Query: 78 GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLK--AKGIDKE-ERRKRALSAIDLIGL 134 G K+ FA L L E L+ A+ +E E++ R D +G Sbjct: 374 GIKLG-----------YFAQHQ-LEFLRADESPLQHLARLAPQELEQKLR-----DYLGG 416 Query: 135 DGFESAHTTEI----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 GF+ TE SGG R+ A P+LLL+DEP + LD+ + L LID Sbjct: 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF 476 Query: 191 WIEGRLPIES 200 EG L + S Sbjct: 477 --EGALVVVS 484 Score = 44.0 bits (104), Expect = 8e-05 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 47/190 (24%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 SL+ G ++LD ++ G+ VGL+G++G GKSTLL ++ +S G F Sbjct: 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF----- 60 Query: 82 KDPPKDISVVF---QTFALFPWLTVLENVELG------LKAKGIDKEER----------- 121 P + + + +T AL LE V G L+A+ D ER Sbjct: 61 ---PGNWQLAWVNQETPALP--QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHG 115 Query: 122 ----------RKRALSAIDLIGLDGFESAHTTE----ISGGMLQRVGFARAFVVFPSLLL 167 R RA S + GL GF + SGG R+ A+A + LLL Sbjct: 116 KLDAIDAWTIRSRAASLLH--GL-GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172 Query: 168 MDEPFSALDV 177 +DEP + LD+ Sbjct: 173 LDEPTNHLDL 182 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 62.3 bits (151), Expect = 2e-10 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 20/209 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPK 86 VL ++F VS E VG++GR+G+GKS++L + +V G+++ + D + Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA--LSAIDL--IGLDGFESAHT 142 +S++ Q+ LF TV N++ + D E +RA ID GLD S Sbjct: 1311 VLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD-LIDLWIEGRLPIESM 201 S G Q + ARA + +L++DE +++DV RTD LI I +M Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDV------RTDSLIQRTIREEFKSCTM 1423 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 L++ H + ++ CD++LV SS G++ E Sbjct: 1424 LVIAHRL-NTIIDCDKILVLSS--GQVLE 1449 Score = 61.9 bits (150), Expect = 3e-10 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 29/208 (13%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-SGQVLFKGKKIKDPPKDISVV 91 L +N + G +V ++G +G GK++L+ + G +S + + V+ +G P +S + Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVP--QVSWI 690 Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-GLDGFESAHTTEI----- 145 F TV EN+ G + ER RA+ L LD TEI Sbjct: 691 FNA-------TVRENILFGSDFE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739 Query: 146 --SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203 SGG QRV ARA + + D+P SALD A + + ++G+ + ++ Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGK----TRVL 795 Query: 204 VTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 VT+ + LM DR+++ S G I EE Sbjct: 796 VTNQLHFLPLM-DRIILVSE--GMIKEE 820 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 62.3 bits (151), Expect = 3e-10 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 28/242 (11%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----K 82 G V + + + G ++G +G GKSTLLR ++ L++P+ G V G+ I K Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77 Query: 83 DPPKDISVVFQTFALFPWLTVLENVELG------LKAKGIDKEERRKRALSAIDLIGLDG 136 + + I ++ Q +TV E V G L + ++E + A+ G+ Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW--RKEDEEAVTKAMQATGITH 135 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE-GR 195 +SGG QR A +++L+DEP + LD+ + + DL++L E R Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI----SHQIDLLELLSELNR 191 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQIVEKIY 255 ++ V H++ +A ++ G+I + P+ ++ E ++E+IY Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIALRE--GKIVAQ-----GAPKEIVTAE---LIERIY 241 Query: 256 AL 257 L Sbjct: 242 GL 243 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 59.4 bits (144), Expect = 2e-09 Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 39/168 (23%) Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPS----SGQVLFKGKKIKDPPKDI------SVVF 92 GE+ +LGR GSG STLL+ IA G + + G P++I VV+ Sbjct: 87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI----TPEEIKKHYRGDVVY 142 Query: 93 --QTFALFPWLTVLENVEL-------GLKAKGIDKEERRKRALSAIDLI-GLDGFESAHT 142 +T FP LTV E ++ + G+ +EE K GL HT Sbjct: 143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-----HT 197 Query: 143 TE----------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 +SGG +RV A A + + D LD TA Sbjct: 198 RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245 Score = 47.8 bits (114), Expect = 5e-06 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%) Query: 15 QDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP---SS 71 +++ +KK ++L+ V+ V G + L+G SG+GK+TLL ++A V+ + Sbjct: 763 RNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820 Query: 72 GQVLFKGKKIKDP-PKDISVVFQTFALFPWLTVLENVELGL---KAKGIDKEERRKRALS 127 G L G+ + + I V Q P TV E++ + K + K E+ + Sbjct: 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880 Query: 128 AIDLIGLDGFESAHTTEISGGM----LQRVGFARAFVVFPSLLL-MDEPFSALDVLTA 180 I L+ ++ + A G+ +R+ V P LLL +DEP S LD TA Sbjct: 881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 59.0 bits (144), Expect = 3e-09 Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 86/251 (34%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ-VLFKGKKI- 81 K + +L ++ + G +G+LG +G+GKSTLLRI+AG+ G+ G K+ Sbjct: 14 KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG 73 Query: 82 ---KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG----- 133 ++P D P TV ENVE G+ K AL + I Sbjct: 74 YLPQEPQLD-----------PEKTVRENVEEGVAEV--------KAALDRFNEIYAAYAE 114 Query: 134 ---------------------LDGFESAHTTEI-----------------SGGMLQRVGF 155 D ++ EI SGG +RV Sbjct: 115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVAL 174 Query: 156 ARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL---PIESMLMVTH------ 206 R + P +LL+DEP + LD AE++ W+E L P +++ VTH Sbjct: 175 CRLLLEKPDMLLLDEPTNHLD---AESV------AWLEQFLHDYP-GTVVAVTHDRYFLD 224 Query: 207 NIEEAVLMCDR 217 N+ +L DR Sbjct: 225 NVAGWILELDR 235 Score = 57.1 bits (139), Expect = 1e-08 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 19/178 (10%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 ++++E +++ +SF G+ L++D ++F++ G IVG++G +G+GKSTL ++I G Sbjct: 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375 Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-L 126 P SG + KI + K ++ V Q+ AL P TV E + GL + E RA + Sbjct: 376 PDSGTI-----KIGETVK-LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 + G D + +SGG R+ A+ ++LL+DEP + LDV E LR Sbjct: 430 GRFNFKGGD--QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV---ETLR 482 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 58.8 bits (142), Expect = 3e-09 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 32/209 (15%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 L+ + F++ G +V ++G+ G GKS+LL + + G V KG P + Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ------ 707 Query: 93 QTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDLIG-LDGFESAHTTEI--- 145 W+ ++ EN+ G E+ ++ L A L+ L+ S TEI Sbjct: 708 ------AWIQNDSLRENILFGKALN----EKYYQQVLEACALLPDLEILPSGDRTEIGEK 757 Query: 146 ----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 SGG QRV ARA + L D+P SA+D +++ +I EG L ++ Sbjct: 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG--PEGVLKNKTR 815 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 ++VTH I + D ++V S G+I+E Sbjct: 816 ILVTHGI-SYLPQVDVIIVMSG--GKISE 841 Score = 47.6 bits (113), Expect = 7e-06 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 32/228 (14%) Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78 +++ L+ LVL +N + GE VG++GR+G+GKS+L + + + G+++ G Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 Query: 79 KKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133 I D I+++ Q LF ++ + L +E A++L Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFS-----GSLRMNLDPFSQYSDE---EVWWALELAH 1399 Query: 134 LDGFESAHTTE-----------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 L F SA + +S G Q V ARA + +L++DE +A+D+ T Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET--- 1456 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 +LI I + ++L + H + ++ RV+V + G +AE Sbjct: 1457 --DNLIQSTIRTQFEDCTVLTIAHRL-NTIMDYTRVIVL--DKGEVAE 1499 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 58.7 bits (143), Expect = 3e-09 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 28/191 (14%) Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLT 102 GE++G++G +G GK+T +++AG++ P G+V + KI P+ I + T Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYD-------GT 416 Query: 103 V---LENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159 V L ++ L + E + L + + + ++SGG LQRV A Sbjct: 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERL-------LDK-NVKDLSGGELQRVAIAACL 468 Query: 160 VVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCD 216 L L+DEP + LDV L I E R + L+V H+I + D Sbjct: 469 SRDADLYLLDEPSAHLDVEQRLAV----AKAIRRIAEERE--ATALVVDHDIYMIDYISD 522 Query: 217 RVLVFSSNPGR 227 R++VF PG+ Sbjct: 523 RLMVFEGEPGK 533 Score = 53.7 bits (130), Expect = 1e-07 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 36/162 (22%) Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ---------VL--FKG-------KKI 81 G++ G+LG +G GK+T ++I++G + P+ G VL F+G KK+ Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKA-KG-----IDKEERRKRALSAIDLIGLD 135 + +I VV + + V+L K KG + K + R + ++ +GL+ Sbjct: 156 YN--GEIKVVHKP----------QYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLE 203 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 +E+SGG LQRV A A + DEP S LD+ Sbjct: 204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 58.1 bits (141), Expect = 4e-09 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 20/104 (19%) Query: 5 AIKDNRLLEIQDIC-----QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL 59 A D + LE++++ FS+ I N + GE++ L+G +GSGKSTL Sbjct: 316 AFPDWQTLELRNVTFAYQDNGFSVGPI----------NLTIKRGELLFLIGGNGSGKSTL 365 Query: 60 LRIIAGLVSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALF 98 ++ GL P SG++L GK + + S VF F LF Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 56.5 bits (137), Expect = 1e-08 Identities = 20/58 (34%), Positives = 38/58 (65%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK 79 L K+ G V+F++ GE++G++G SGSGK+TLL ++ ++P +G+V ++ + Sbjct: 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68 Score = 55.3 bits (134), Expect = 3e-08 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI-DLWIEGRLPIESMLMV 204 SGGM QR+ AR V P L+ MDEP LDV L DL+ L E L ++++V Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL-LDLLRGLVRELGL---AVVIV 208 Query: 205 THNIEEAVLMCDRVLVFSSNPGRIAE 230 TH++ A L+ R+LV GR+ E Sbjct: 209 THDLAVARLLAHRLLVMKQ--GRVVE 232 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 55.3 bits (133), Expect = 3e-08 Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 18/181 (9%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87 G L+ +NF + + ++G +G GKST+L++I+G + PSSG V F+ K++ Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVR----- 573 Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISG 147 ++V Q L+ + + G+ E++ + L + + G + +T +SG Sbjct: 574 MAVFSQHHVDGLDLSSNPLLYMMRCFPGV-PEQKLRAHLGSFGVTGNLALQPMYT--LSG 630 Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTH 206 G RV FA+ P +LL+DEP + LD+ D ++ I+G + + +LMV+H Sbjct: 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDL--------DAVEALIQGLVLFQGGVLMVSH 682 Query: 207 N 207 + Sbjct: 683 D 683 Score = 39.8 bits (93), Expect = 0.001 Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 66/247 (26%) Query: 5 AIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR--- 61 AIKD + ++FS+ + G L++D + ++ G GL+GR+G+GK+T LR Sbjct: 174 AIKDIHM-------ENFSIS-VGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 Query: 62 --IIAGLVSPSSGQVL-FKGKKIKDPPKDISVVFQT-----------FALFPWLTVLENV 107 I G+ P + Q+L + + + D + V T L LE Sbjct: 225 MHAIDGI--PKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE 282 Query: 108 ELGLKAKGIDKEERRKRALSA--------IDLIGLDGFES-----------------AHT 142 K KG +K+ K A+S ++LI E+ T Sbjct: 283 TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT 342 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL---PIE 199 SGG R+ ARA + P LLL+DEP + LD+ LW+E L P + Sbjct: 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV---------LWLETYLLKWP-K 392 Query: 200 SMLMVTH 206 + ++V+H Sbjct: 393 TFIVVSH 399 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 54.1 bits (130), Expect = 6e-08 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 50 GRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVE 108 G +G GKS+LLR+IAG++ PSSG + +K I + K + + L +TV EN Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFEN-- 90 Query: 109 LGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLM 168 L ++ + E +AI L +S GM + V AR L L+ Sbjct: 91 LKFWSEIYNSAE---TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147 Query: 169 DEPFSALD 176 DE + L Sbjct: 148 DEVETNLS 155 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 53.9 bits (129), Expect = 7e-08 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 45/171 (26%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWL 101 GE++ ++G GSGK+TL R +A + P G V++ Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------------------- 35 Query: 102 TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVV 161 ID E+ + L + LI + G + SG + R+ A A + Sbjct: 36 --------------IDGEDILEEVLDQLLLIIVGGKK----ASGSGELRLRLALALARKL 77 Query: 162 FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTHNIEE 210 P +L++DE S LD L + ++ +++ T++ ++ Sbjct: 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 52.5 bits (126), Expect = 2e-07 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 43/194 (22%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 +L V+ +V G++ +LG +GSGKSTLL+ + S G+V + + I+ V Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------RSIAYV 726 Query: 92 FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAI-------DLIGLDGFESAH 141 Q W+ TV N+ D EE R A+ DL L G Sbjct: 727 PQQ----AWIMNATVRGNILF------FD-EEDAARLADAVRVSQLEADLAQLGG---GL 772 Query: 142 TTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 TEI SGG RV ARA + L+D+P SALD E + + G Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC----FLG 828 Query: 195 RLPIESMLMVTHNI 208 L ++ ++ TH + Sbjct: 829 ALAGKTRVLATHQV 842 Score = 50.9 bits (122), Expect = 6e-07 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 25/163 (15%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP 85 LVL V+F ++ E VG++GR+GSGKSTLL +V G++ G++I ++ Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145 + S++ Q LF TV +NV+ L+A + +A++L+GL ++ + I Sbjct: 1384 RQFSMIPQDPVLFDG-TVRQNVDPFLEASSAE-------VWAALELVGLRERVASESEGI 1435 Query: 146 -----------SGGMLQRVGFARAFVVFPS-LLLMDEPFSALD 176 S G Q + ARA + S +LMDE + +D Sbjct: 1436 DSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 49.6 bits (118), Expect = 2e-06 Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 20/170 (11%) Query: 70 SSGQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124 +SG++L G I KD S+V Q LF +++ EN++ G K ++ +R Sbjct: 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFG-KEDATREDVKRAC 1332 Query: 125 ALSAIDLIGLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 +AID ++ + + T + SGG QR+ ARA + P +LL+DE S+LD Sbjct: 1333 KFAAIDEF-IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR 227 + + + ++D+ + ++++ + H I ++ D+++VF +NP R Sbjct: 1392 NSEKLIEKTIVDIKDKAD---KTIITIAHRI-ASIKRSDKIVVF-NNPDR 1436 Score = 38.1 bits (88), Expect = 0.005 Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75 +NF ++ G+ +G SG GKST+L++I L P+ G ++ Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 Score = 36.5 bits (84), Expect = 0.013 Identities = 15/37 (40%), Positives = 26/37 (70%) Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 ++ +++SGG QR+ ARA + P +L++DE S+LD Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611 Score = 27.7 bits (61), Expect = 6.8 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 2 ANIAIKDN---RLLEIQDICQSFSLKKIS------GNLLVLDKVNFNVSSGEIVGLLGRS 52 +NI ++DN R+ DI + ++ N+ + + F+ S + ++G + Sbjct: 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 Query: 53 GSGKSTLLRII 63 GSGKST++ ++ Sbjct: 1204 GSGKSTVMSLL 1214 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 48.9 bits (117), Expect = 2e-06 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 20/160 (12%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90 LVL +N +V S V L+G +GSGKSTL ++ G + G++ G+ + SV Sbjct: 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH--SV 412 Query: 91 VFQTFALF---PWL---TVLENVELGLKAKGIDKEERRKRALSAIDLIGL-----DGFES 139 + Q A+ P + T L NV LG + I EE+ +AL + L L DG + Sbjct: 413 LRQGVAMVQQDPVVLADTFLANVTLG---RDIS-EEQVWQALETVQLAELARSLPDGLYT 468 Query: 140 ---AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 +S G Q + AR V P +L++DE + +D Sbjct: 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 47.8 bits (114), Expect = 5e-06 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 36/170 (21%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86 +G++L+ + ++F V SG + + G +G GKS+L RI+ L ++ G+ K Sbjct: 463 NGDVLI-ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP------VYGGRLTKPAKG 515 Query: 87 DISVVFQTFALFPWLTVLENVELG-LKAKGI---DKEERRKRALSAIDLIG-LD------ 135 + V Q P++T LG L+ + I E+ ++R LS DL LD Sbjct: 516 KLFYVPQR----PYMT------LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH 565 Query: 136 ------GFESAH--TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 G+ + +SGG QR+ AR F P ++DE SA+ V Sbjct: 566 ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 46.3 bits (110), Expect = 2e-05 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 49/263 (18%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL+I+++ F K G + +D+V+ ++ GEI GL+G SGSGKS + + I G V+ Sbjct: 3 LLDIRNLTIEF--KTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VTKD 59 Query: 71 SGQVLFKGKKIKD-------PPK-------DISVVFQTFALFPW--LTVLENVELGL--- 111 + +V + D P + ++S++FQ P L E V L Sbjct: 60 NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE----PQSCLDPSERVGRQLMQN 115 Query: 112 ------KAKGIDKEERRKRALSAIDLIGLDGFE------SAHTTEISGGMLQRVGFARAF 159 K + + RKR AI+L+ G + + E++ G Q+V A A Sbjct: 116 IPGWTYKGRWWQRFGWRKR--RAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIAL 173 Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219 P LL+ DEP +A++ T + L L I L+++H+++ D++ Sbjct: 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTI---LLISHDLQMLSQWADKIN 230 Query: 220 VFSSNPGRIAE----EVLISIPH 238 V G+ E + L++ PH Sbjct: 231 VLYC--GQTVETAPSKELVTTPH 251 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 45.3 bits (108), Expect = 3e-05 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++++ + F N + +N + +GE + ++G +G GK+TLLR + G + P S Sbjct: 320 LEVENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373 Query: 72 GQV 74 G V Sbjct: 374 GTV 376 Score = 42.6 bits (101), Expect = 2e-04 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 41/167 (24%) Query: 47 GLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQ-TFALFPWLTVLE 105 GL+G +G GKST ++I+ G + PS+G V DP + + + Q FA F TVL+ Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNV------SLDPNERLGKLRQDQFA-FEEFTVLD 83 Query: 106 NVELGLKAKGIDKEER-RKRALS---------AIDLIG----LDGF-------------- 137 V +G K+ER R AL DL +DG+ Sbjct: 84 TVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 Query: 138 --ESAHT---TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 E H +E++ G RV A+A P +LL+DEP + LD+ T Sbjct: 144 IPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 45.0 bits (107), Expect = 4e-05 Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 33/202 (16%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG--LVSPSSGQVLF-----KGKKIKDP 84 +L +++ V+ GE ++G +G+GKSTLL +I G S+ LF G+ I D Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 Query: 85 PKDISVVFQTFAL-FPWLTVLENVEL-------GLKAKGIDKEERRKRALSAIDLIGLDG 136 K I V + L + T + NV L G+ D++ +K A +D++G+D Sbjct: 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ--QKLAQQWLDILGIDK 392 Query: 137 ------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 F S +S G + RA V P+LL++DEP LD L + +R +D+ Sbjct: 393 RTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDV 446 Query: 191 WI-EGRLPIESMLMVTHNIEEA 211 I EG +L V+H+ E+A Sbjct: 447 LISEGE---TQLLFVSHHAEDA 465 Score = 36.5 bits (85), Expect = 0.015 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 17/176 (9%) Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KD 83 L L + +++G+ +G +GSGKS L R +AG + SG+ + I + Sbjct: 17 KTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ 74 Query: 84 PPKDISVVFQ---TFALFPWLTVLENVELGLKAKGIDKEERRKRALSA--IDLIGLDGFE 138 K +S +Q T L P + G I ++E + A G+ Sbjct: 75 LQKLVSDEWQRNNTDMLSP-----GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALL 129 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 +S G ++ +A + P LL++DEPF LDV + + L L L G Sbjct: 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185 >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional. Length = 213 Score = 44.3 bits (104), Expect = 6e-05 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90 +VLDK +F + E +G+L GSGK+TL R++ GL +P G F G + P + Sbjct: 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD--FIGLRGDALPLGAN- 57 Query: 91 VFQTFALFPWLTVLENVELGLKAKGIDKEE 120 +F L P LT EN + G+D +E Sbjct: 58 ---SFIL-PGLTGEENARMMASLYGLDGDE 83 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 42.5 bits (100), Expect = 2e-04 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 28/158 (17%) Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALF---- 98 G + L+G SG+GK+TL+ ++AG +G + +I PK +TFA Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPK----KQETFARISGYC 958 Query: 99 -------PWLTVLENVE----LGLKAKGIDKEERRKRALSAIDLIGLDGFESA-----HT 142 P +TV E++ L L K + KEE+ ++L+ LD + A Sbjct: 959 EQNDIHSPQVTVRESLIYSAFLRL-PKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 T +S +R+ A V PS++ MDEP S LD A Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055 Score = 36.4 bits (84), Expect = 0.016 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 44/176 (25%) Query: 48 LLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGKKIKD--PPKDISVVFQTFALFPWLT 102 LLG SGK+TLL +AG + PS SG++ + G ++ + P K + + Q +T Sbjct: 196 LLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 Query: 103 VLENVELGLKAKGIDKE--------ERRKRA----LSAIDL----IGLDGFESAHTTE-- 144 V E ++ + +G+ R K A + +DL ++G +S+ T+ Sbjct: 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYT 315 Query: 145 ---------------------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 ISGG +RV V L MDE + LD T Sbjct: 316 LKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 39.8 bits (93), Expect = 0.002 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 47/223 (21%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VS 68 +L I+D+ S K I L +N V GE+ ++G +GSGKSTL +AG Sbjct: 1 MLSIKDLHVSVEDKAI------LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE 54 Query: 69 PSSGQVLFKGKKIKD-PPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 + G V FKGK + + P+D I + FQ P ++ ++ L A R Sbjct: 55 VTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV------RS 108 Query: 123 KRALSAIDLIGLDGF--ESAHTTEISGGMLQR---VGFA----------RAFVVFPSLLL 167 R +D E ++ +L R VGF+ + V+ P L + Sbjct: 109 YRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168 Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEG----RLPIESMLMVTH 206 +DE S LD+ D + + +G R S ++VTH Sbjct: 169 LDESDSGLDI--------DALKIVADGVNSLRDGKRSFIIVTH 203 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 32.3 bits (74), Expect = 0.23 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSP 69 ++G+ G SG GK+T LR +A L+ Sbjct: 10 LLGVAGDSGCGKTTFLRGLADLLGE 34 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 31.4 bits (72), Expect = 0.51 Identities = 13/20 (65%), Positives = 15/20 (75%) Query: 40 VSSGEIVGLLGRSGSGKSTL 59 +S G+ V LLG SG GKSTL Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211 >gnl|CDD|149727 pfam08757, CotH, CotH protein. Members of this family include the spore coat protein H (cotH). Length = 298 Score = 30.7 bits (70), Expect = 0.74 Identities = 13/38 (34%), Positives = 17/38 (44%) Query: 374 NLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETID 411 L RR+LD+ + ARF L +EE ID Sbjct: 217 PLFRRLLDDPAFRARYKARFEELLNGVFTEERLLAKID 254 >gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. Length = 504 Score = 30.3 bits (68), Expect = 0.95 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR 61 +L K N + S ++ L G SG GKS +L Sbjct: 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 >gnl|CDD|163043 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. Length = 270 Score = 30.4 bits (69), Expect = 1.0 Identities = 12/34 (35%), Positives = 21/34 (61%) Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 ++ GK+TLLR +A ++S Q+ +GKK+ Sbjct: 116 IISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149 >gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated. Length = 438 Score = 30.1 bits (68), Expect = 1.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIA 64 V G+ VG+ SG GKSTL+ +IA Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMIA 179 >gnl|CDD|180023 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed. Length = 436 Score = 30.1 bits (69), Expect = 1.2 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 29/77 (37%) Query: 75 LFKGKKIKDPPKD---------ISVV----FQ----TFALFPWLTVLENVELGLKAKGID 117 L GK+ PP I+ FQ F LFP LG + +G D Sbjct: 362 LALGKEPVIPPPTTALGALLNYITGANPKHFQPMNANFGLFP--------PLGKRIRGED 413 Query: 118 KEERRK----RALSAID 130 K+ER++ RAL+ + Sbjct: 414 KKERKEAYAERALADLK 430 >gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. Length = 188 Score = 30.0 bits (68), Expect = 1.2 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 45 IVGLLGRSGSGKSTLLRIIA 64 I+GL G GSGKST+ +A Sbjct: 1 IIGLTGGIGSGKSTVANYLA 20 >gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase. Length = 434 Score = 29.7 bits (67), Expect = 1.4 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 109 LGLKAKGIDKEERRKRALSAIDLIGL-DGF 137 LG+ AKG D E R RA A+D I GF Sbjct: 386 LGVTAKGKDIAEARARAYDAVDQIDWPGGF 415 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 29.5 bits (66), Expect = 1.6 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 9/62 (14%) Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP----IESMLMVTHN 207 RV A+ SLL+MDEP + LD E+ RT+L D+ IE L I ++M++H+ Sbjct: 815 RVAVAQFLNNDKSLLIMDEPTAFLD----EDRRTNLKDI-IEYSLKDSSDIPQVIMISHH 869 Query: 208 IE 209 E Sbjct: 870 RE 871 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 29.0 bits (65), Expect = 2.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTL 59 L ++ EIV L G SGSGKS+L Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42 >gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional. Length = 201 Score = 29.1 bits (66), Expect = 2.4 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Query: 44 EIVGLLGRSGSGKSTLLRIIAG 65 EIV +GRS GKSTL+R + G Sbjct: 11 EIV-FVGRSNVGKSTLVRELTG 31 >gnl|CDD|163405 TIGR03693, ocin_ThiF_like, putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. Length = 637 Score = 28.8 bits (64), Expect = 3.2 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%) Query: 273 PGSGIGIFLRHVSTNL------LSGLIEAVMAPPYNGKADLPDLANSLQLE-ADRLFHIG 325 P G + R+ + + ++ E ++ P +NG+ L D+ + L R+F IG Sbjct: 20 PDPNGGAYFRNNAGSFRLDGDGIANWFEKLL-PMFNGEHSLADITDGLPAPYQKRVFEIG 78 Query: 326 ESL 328 E L Sbjct: 79 EIL 81 >gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF; Provisional. Length = 407 Score = 28.5 bits (63), Expect = 3.3 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%) Query: 26 ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 +SG L V D +F++S+ I+ L+G++G GK+T L Sbjct: 191 LSGKLAVED--SFDLSNHRIISLIGQTGVGKTTTL 223 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 28.4 bits (64), Expect = 3.6 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Query: 37 NFNVSSGEIVG---LLGRSGSGKSTLLRIIA 64 NF+V +++G + G +GSGK+TLL + Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLL 455 >gnl|CDD|163595 TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated. protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure. Length = 346 Score = 28.5 bits (64), Expect = 3.7 Identities = 10/24 (41%), Positives = 11/24 (45%) Query: 370 VPLVNLIRRVLDERRLHSAPAARF 393 VP V IR D+RR P R Sbjct: 263 VPSVADIRARFDQRRRGRGPLDRL 286 >gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 413 Score = 28.4 bits (64), Expect = 3.9 Identities = 13/22 (59%), Positives = 16/22 (72%) Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64 G+ VG+ SG GKSTLL +IA Sbjct: 137 GQRVGIFAGSGVGKSTLLGMIA 158 >gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed. Length = 335 Score = 28.1 bits (64), Expect = 4.1 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 46 VGLLGRSGSGKSTLLRII 63 VGL+G +GKSTL+ + Sbjct: 161 VGLVGLPNAGKSTLISAV 178 >gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440 Score = 28.1 bits (63), Expect = 4.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIA 64 V G+ +G+ SG GKSTLL +IA Sbjct: 158 LTVGKGQRIGIFAGSGVGKSTLLGMIA 184 >gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed. Length = 390 Score = 27.9 bits (63), Expect = 4.9 Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 46 VGLLGRSGSGKSTLLRII 63 VGLLG +GKST +R + Sbjct: 162 VGLLGLPNAGKSTFIRAV 179 >gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below. Length = 207 Score = 28.1 bits (63), Expect = 5.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVS 68 G I+G+ G SGSGK+T+ R I + Sbjct: 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 >gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional. Length = 208 Score = 28.1 bits (63), Expect = 5.3 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66 +VG+ G GSGKST+ R +A + Sbjct: 7 LVGVTGGIGSGKSTVCRFLAEM 28 >gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. Length = 329 Score = 27.8 bits (63), Expect = 5.5 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 46 VGLLGRSGSGKSTLLRII 63 VGL+G +GKSTL+ + Sbjct: 160 VGLVGLPNAGKSTLISAV 177 >gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase. Length = 422 Score = 27.7 bits (62), Expect = 5.6 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64 G+ +G+ +G GKSTLL +IA Sbjct: 145 GQRIGIFAGAGVGKSTLLGMIA 166 >gnl|CDD|178848 PRK00081, coaE, dephospho-CoA kinase; Reviewed. Length = 197 Score = 27.8 bits (63), Expect = 6.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66 I+GL G GSGKST+ + A L Sbjct: 4 IIGLTGGIGSGKSTVANLFAEL 25 >gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. Length = 161 Score = 27.7 bits (62), Expect = 6.3 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 11/48 (22%) Query: 46 VGLLGRSGSGKSTLLRIIAGLVSPSS-----------GQVLFKGKKIK 82 + ++G GKSTLL + G + + GK K Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYK 51 >gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional. Length = 172 Score = 27.8 bits (62), Expect = 6.6 Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 50 GRSGSGKSTLLRIIAG 65 GRSGSGK+TL +A Sbjct: 22 GRSGSGKTTLAGALAA 37 >gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional. Length = 288 Score = 27.4 bits (62), Expect = 7.0 Identities = 8/12 (66%), Positives = 9/12 (75%) Query: 50 GRSGSGKSTLLR 61 G SG+GKS LR Sbjct: 13 GLSGAGKSVALR 24 >gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional. Length = 567 Score = 27.5 bits (62), Expect = 7.4 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 15/54 (27%) Query: 226 GRIAEEVLISIPHPRNRLSPE-FRQIVEKIYALMT------KKEEKRLNPLENA 272 + EEV N LS E R+ +E++ + K+E+K L PL NA Sbjct: 52 KEVVEEV--------NSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNA 97 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 27.3 bits (62), Expect = 8.1 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 382 ERRLHSAPAARFRNELEDYMSE 403 ERR + R ELE YMSE Sbjct: 385 ERRYRETESEYVREELEKYMSE 406 >gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated. Length = 432 Score = 27.2 bits (60), Expect = 8.3 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64 EI D+ ++ +K I L + G+ +G+ SG GKSTLL +IA Sbjct: 135 EITDVFET-GIKSIDSML--------TIGIGQKIGIFAGSGVGKSTLLGMIA 177 >gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional. Length = 395 Score = 27.3 bits (61), Expect = 9.0 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 46 VGLLGRSGSGKSTLLRIIAGL 66 +GL G G+GKST+ +A L Sbjct: 4 IGLTGGIGAGKSTVAARLAEL 24 >gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional. Length = 460 Score = 27.1 bits (61), Expect = 9.1 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIV 46 ++ +I G LL ++ V V+ GEIV Sbjct: 6 TVSEIKGPLLFVEGVE-GVAYGEIV 29 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 27.2 bits (61), Expect = 9.3 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 48 LLGRSGSGKSTLLRIIAGL 66 L+GRSG GK+TL + + G Sbjct: 6 LIGRSGCGKTTLTQALNGE 24 >gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed. Length = 298 Score = 27.1 bits (61), Expect = 9.5 Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 48 LLGRSGSGKSTLLRIIAG 65 L G+SG GKSTLL +A Sbjct: 169 LAGQSGVGKSTLLNALAP 186 >gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional. Length = 818 Score = 27.1 bits (60), Expect = 9.6 Identities = 11/17 (64%), Positives = 14/17 (82%) Query: 48 LLGRSGSGKSTLLRIIA 64 + G +GSGKSTLL +IA Sbjct: 461 IFGPTGSGKSTLLALIA 477 >gnl|CDD|150244 pfam09502, HrpB4, Bacterial type III secretion protein (HrpB4). This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia. Length = 215 Score = 27.1 bits (60), Expect = 9.9 Identities = 17/41 (41%), Positives = 21/41 (51%) Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 G L RV A + PSL +DEP + L VL A +L L Sbjct: 51 GALSRVIQAWSGGPSPSLGALDEPANRLAVLPAADLLRVLR 91 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.138 0.387 Gapped Lambda K H 0.267 0.0703 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,382,168 Number of extensions: 503258 Number of successful extensions: 1975 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1617 Number of HSP's successfully gapped: 332 Length of query: 438 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 342 Effective length of database: 3,920,105 Effective search space: 1340675910 Effective search space used: 1340675910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.6 bits)